RNA–Protein interactions for RNA: YMR223W

UBP8, Transcript of Ubiquitin-specific protease component of the SAGA acetylation complex, yeastyeast

Gene UBP8, Length 1,416 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
UBP8YMR223W YDL109CQ12103 647 aa2.96□□□□□ -1.94
UBP8YMR223W UBA3Q99344 299 aa2.96□□□□□ -1.94
UBP8YMR223W ATP1P07251 545 aaKnown RBP2.95□□□□□ -1.94
UBP8YMR223W PET494P07390 489 aaPredicted RBP2.95□□□□□ -1.94
UBP8YMR223W RPL35AP0CX84 120 aaKnown RBP2.95□□□□□ -1.94
UBP8YMR223W RPL35BP0CX85 120 aaKnown RBP2.95□□□□□ -1.94
UBP8YMR223W SEC63P14906 663 aa2.95□□□□□ -1.94
UBP8YMR223W GPI12P23797 304 aa2.95□□□□□ -1.94
UBP8YMR223W RHB1P25378 209 aa2.95□□□□□ -1.94
UBP8YMR223W BUB3P26449 341 aa2.95□□□□□ -1.94
UBP8YMR223W PPA2P28239 310 aa2.95□□□□□ -1.94
UBP8YMR223W PRR1P28708 518 aa2.95□□□□□ -1.94
UBP8YMR223W BMH1P29311 267 aaKnown RBP2.95□□□□□ -1.94
UBP8YMR223W YSC83P32792 385 aa2.95□□□□□ -1.94
UBP8YMR223W RPC25P35718 212 aa2.95□□□□□ -1.94
UBP8YMR223W MID2P36027 376 aa2.95□□□□□ -1.94
UBP8YMR223W CBT1P36038 271 aaPredicted RBP2.95□□□□□ -1.94
UBP8YMR223W ARA1P38115 344 aa2.95□□□□□ -1.94
UBP8YMR223W MRP21P38175 177 aa2.95□□□□□ -1.94
UBP8YMR223W RTC3P38804 111 aaPredicted RBP2.95□□□□□ -1.94
UBP8YMR223W PRP39P39682 629 aaKnown RBP2.95□□□□□ -1.94
UBP8YMR223W YAR1P46683 200 aa2.95□□□□□ -1.94
UBP8YMR223W IBA57P47158 497 aa2.95□□□□□ -1.94
UBP8YMR223W TRM112P53738 135 aaPredicted RBP2.95□□□□□ -1.94
UBP8YMR223W MTQ1P53944 314 aa2.95□□□□□ -1.94
UBP8YMR223W YDR541CQ03049 344 aa2.95□□□□□ -1.94
UBP8YMR223W CDC123Q05791 360 aa2.95□□□□□ -1.94
UBP8YMR223W YLR283WQ05867 314 aa2.95□□□□□ -1.94
UBP8YMR223W MDM30Q05930 598 aa2.95□□□□□ -1.94
UBP8YMR223W YRA1Q12159 226 aaKnown RBP2.95□□□□□ -1.94
UBP8YMR223W PRP46Q12417 451 aaPredicted RBP2.95□□□□□ -1.94
UBP8YMR223W RAV1P47104 1357 aa2.95□□□□□ -1.94
UBP8YMR223W RAD7P06779 565 aa2.94□□□□□ -1.94
UBP8YMR223W RAD3P06839 778 aa2.94□□□□□ -1.94
UBP8YMR223W SPS4P09937 338 aa2.94□□□□□ -1.94
UBP8YMR223W NFT1P0CE68 1218 aa2.94□□□□□ -1.94
UBP8YMR223W THR4P16120 514 aaKnown RBP2.94□□□□□ -1.94
UBP8YMR223W YSR3P23501 404 aa2.94□□□□□ -1.94
UBP8YMR223W CSM1P25651 190 aa2.94□□□□□ -1.94
UBP8YMR223W ATP7P30902 174 aa2.94□□□□□ -1.94
UBP8YMR223W SPS19P32573 292 aaKnown RBP2.94□□□□□ -1.94
UBP8YMR223W GCG1P32656 232 aaKnown RBP2.94□□□□□ -1.94
UBP8YMR223W SKT5P34226 696 aa2.94□□□□□ -1.94
UBP8YMR223W COS9P36034 407 aa2.94□□□□□ -1.94
UBP8YMR223W DOA1P36037 715 aa2.94□□□□□ -1.94
UBP8YMR223W RIB1P38066 345 aa2.94□□□□□ -1.94
UBP8YMR223W MIX23P38162 196 aa2.94□□□□□ -1.94
UBP8YMR223W QDR3P38227 689 aa2.94□□□□□ -1.94
UBP8YMR223W RTC2P38279 296 aa2.94□□□□□ -1.94
UBP8YMR223W DSE1P40077 573 aa2.94□□□□□ -1.94
UBP8YMR223W STE24P47154 453 aa2.94□□□□□ -1.94
UBP8YMR223W YGL108CP53139 140 aa2.94□□□□□ -1.94
UBP8YMR223W SLX9P53251 210 aaPredicted RBP2.94□□□□□ -1.94
UBP8YMR223W SLG1P54867 378 aa2.94□□□□□ -1.94
UBP8YMR223W HAL1Q01766 294 aa2.94□□□□□ -1.94
UBP8YMR223W SPP2Q02521 185 aa2.94□□□□□ -1.94
UBP8YMR223W SKI8Q02793 397 aaPredicted RBP2.94□□□□□ -1.94
UBP8YMR223W MRP51Q02950 344 aa2.94□□□□□ -1.94
UBP8YMR223W AIM33Q04516 312 aa2.94□□□□□ -1.94
UBP8YMR223W YMR310CQ04867 317 aaPredicted RBP2.94□□□□□ -1.94
UBP8YMR223W SPC2Q04969 178 aa2.94□□□□□ -1.94
UBP8YMR223W PAM18Q07914 168 aa2.94□□□□□ -1.94
UBP8YMR223W REX4Q08237 289 aa2.94□□□□□ -1.94
UBP8YMR223W MED2Q12124 431 aa2.94□□□□□ -1.94
UBP8YMR223W RIO1Q12196 484 aaKnown RBP2.94□□□□□ -1.94
UBP8YMR223W YDR262WQ12331 272 aa2.94□□□□□ -1.94
UBP8YMR223W RMD5Q12508 421 aa2.94□□□□□ -1.94
UBP8YMR223W YCL012CQ8J0M4 134 aa2.94□□□□□ -1.94
UBP8YMR223W RHO2P06781 192 aa2.93□□□□□ -1.94
UBP8YMR223W COR1P07256 457 aa2.93□□□□□ -1.94
UBP8YMR223W RPL27AP0C2H6 136 aaKnown RBP2.93□□□□□ -1.94
UBP8YMR223W RPL27BP0C2H7 136 aaKnown RBP2.93□□□□□ -1.94
UBP8YMR223W MAS1P10507 462 aa2.93□□□□□ -1.94
UBP8YMR223W FRS2P15625 503 aaKnown RBP2.93□□□□□ -1.94
UBP8YMR223W SEN2P16658 377 aa2.93□□□□□ -1.94
UBP8YMR223W DPB2P24482 689 aaPredicted RBP2.93□□□□□ -1.94
UBP8YMR223W TPS2P31688 896 aaKnown RBP2.93□□□□□ -1.94
UBP8YMR223W PRP18P33411 251 aaPredicted RBP2.93□□□□□ -1.94
UBP8YMR223W SPO23P33757 523 aa2.93□□□□□ -1.94
UBP8YMR223W STP2P38704 541 aa2.93□□□□□ -1.94
UBP8YMR223W YHR122WP38829 231 aa2.93□□□□□ -1.94
UBP8YMR223W PFS1P38872 237 aa2.93□□□□□ -1.94
UBP8YMR223W MBB1P39534 108 aa2.93□□□□□ -1.94
UBP8YMR223W SEC72P39742 193 aaKnown RBP2.93□□□□□ -1.94
UBP8YMR223W PAN6P40459 309 aa2.93□□□□□ -1.94
UBP8YMR223W POP6P53218 158 aa2.93□□□□□ -1.94
UBP8YMR223W NOP19P53317 196 aaPredicted RBP2.93□□□□□ -1.94
UBP8YMR223W RNY1Q02933 434 aaKnown RBP2.93□□□□□ -1.94
UBP8YMR223W HER2Q03557 464 aa2.93□□□□□ -1.94
UBP8YMR223W NSE1Q07913 336 aa2.93□□□□□ -1.94
UBP8YMR223W YOL075CQ08234 1294 aa2.93□□□□□ -1.94
UBP8YMR223W PEX27Q08580 376 aa2.93□□□□□ -1.94
UBP8YMR223W AIM45Q12480 344 aaKnown RBP2.93□□□□□ -1.94
UBP8YMR223W TUS1Q06412 1307 aa2.93□□□□□ -1.94
UBP8YMR223W THP2O13539 261 aaKnown RBP2.93□□□□□ -1.94
UBP8YMR223W GPH1P06738 902 aaKnown RBP2.93□□□□□ -1.94
UBP8YMR223W RIP1P08067 215 aa2.93□□□□□ -1.94
UBP8YMR223W RPS24AP0CX31 135 aaKnown RBP2.93□□□□□ -1.94
UBP8YMR223W RPS24BP0CX32 135 aaKnown RBP2.93□□□□□ -1.94
UBP8YMR223W CKI1P20485 582 aa2.93□□□□□ -1.94
Retrieved 100 of 5,963 RNA–protein pairs in 32.7 ms