RNA–Protein interactions for RNA: YDR177W

UBC1, Transcript of Ubiquitin-conjugating enzyme, yeast

Gene UBC1, Length 648 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
UBC1	YDR177W	GTO3	Q04806	366 aa		4.27	□□□□□ -1.73
UBC1	YDR177W	COX20	Q04935	205 aa		4.27	□□□□□ -1.73
UBC1	YDR177W	YPR172W	Q06608	200 aa		4.27	□□□□□ -1.73
UBC1	YDR177W	ALE1	Q08548	619 aa		4.27	□□□□□ -1.73
UBC1	YDR177W	SNX3	Q08826	162 aa	Known RBP	4.27	□□□□□ -1.73
UBC1	YDR177W	CSR2	Q12734	1121 aa		4.27	□□□□□ -1.73
UBC1	YDR177W	IZH4	Q99393	312 aa		4.27	□□□□□ -1.73
UBC1	YDR177W	FRS2	P15625	503 aa	Known RBP	4.26	□□□□□ -1.73
UBC1	YDR177W	FAR1	P21268	830 aa		4.26	□□□□□ -1.73
UBC1	YDR177W	UTR1	P21373	530 aa		4.26	□□□□□ -1.73
UBC1	YDR177W	DAL82	P21705	255 aa		4.26	□□□□□ -1.73
UBC1	YDR177W	SLY1	P22213	666 aa		4.26	□□□□□ -1.73
UBC1	YDR177W	AIM17	P23180	465 aa	Known RBP	4.26	□□□□□ -1.73
UBC1	YDR177W	EXG1	P23776	448 aa	Known RBP	4.26	□□□□□ -1.73
UBC1	YDR177W	ZIP1	P31111	875 aa		4.26	□□□□□ -1.73
UBC1	YDR177W	ARO4	P32449	370 aa	Known RBP	4.26	□□□□□ -1.73
UBC1	YDR177W	KRE6	P32486	720 aa		4.26	□□□□□ -1.73
UBC1	YDR177W	MEI5	P32489	222 aa		4.26	□□□□□ -1.73
UBC1	YDR177W	ZRT1	P32804	376 aa		4.26	□□□□□ -1.73
UBC1	YDR177W	PRS1	P32895	427 aa	Known RBP	4.26	□□□□□ -1.73
UBC1	YDR177W	YKL162C	P36052	402 aa		4.26	□□□□□ -1.73
UBC1	YDR177W	YPT35	P38815	214 aa	Known RBP	4.26	□□□□□ -1.73
UBC1	YDR177W	HAT2	P39984	401 aa		4.26	□□□□□ -1.73
UBC1	YDR177W	FMP33	P46998	180 aa		4.26	□□□□□ -1.73
UBC1	YDR177W	YJR030C	P47101	745 aa		4.26	□□□□□ -1.73
UBC1	YDR177W	TRF5	P48561	642 aa	Known RBP	4.26	□□□□□ -1.73
UBC1	YDR177W	OKP1	P53298	406 aa		4.26	□□□□□ -1.73
UBC1	YDR177W	MKC7	P53379	596 aa		4.26	□□□□□ -1.73
UBC1	YDR177W	MNT4	P53745	580 aa		4.26	□□□□□ -1.73
UBC1	YDR177W	HCH1	P53834	153 aa		4.26	□□□□□ -1.73
UBC1	YDR177W	IRC4	Q03036	179 aa		4.26	□□□□□ -1.73
UBC1	YDR177W	CTS2	Q06350	511 aa		4.26	□□□□□ -1.73
UBC1	YDR177W	BSC6	Q08280	497 aa		4.26	□□□□□ -1.73
UBC1	YDR177W	YLR108C	Q12259	485 aa		4.26	□□□□□ -1.73
UBC1	YDR177W	SET6	Q12529	373 aa		4.26	□□□□□ -1.73
UBC1	YDR177W	RRP12	Q12754	1228 aa	Known RBP	4.26	□□□□□ -1.73
UBC1	YDR177W	YOS9	Q99220	542 aa		4.26	□□□□□ -1.73
UBC1	YDR177W	RPA190	P10964	1664 aa	Known RBP	4.26	□□□□□ -1.73
UBC1	YDR177W	POL1	P13382	1468 aa		4.25	□□□□□ -1.73
UBC1	YDR177W	QCR6	P00127	147 aa		4.25	□□□□□ -1.73
UBC1	YDR177W	RAD1	P06777	1100 aa		4.25	□□□□□ -1.73
UBC1	YDR177W	TOP2	P06786	1428 aa	Known RBP	4.25	□□□□□ -1.73
UBC1	YDR177W	RPL42A	P0CX27	106 aa	Known RBP	4.25	□□□□□ -1.73
UBC1	YDR177W	RPL42B	P0CX28	106 aa	Known RBP	4.25	□□□□□ -1.73
UBC1	YDR177W	ATR1	P13090	542 aa		4.25	□□□□□ -1.73
UBC1	YDR177W	GLN3	P18494	730 aa		4.25	□□□□□ -1.73
UBC1	YDR177W	NDC1	P32500	655 aa		4.25	□□□□□ -1.73
UBC1	YDR177W	YHR035W	P38769	630 aa		4.25	□□□□□ -1.73
UBC1	YDR177W	MTC6	P38849	526 aa		4.25	□□□□□ -1.73
UBC1	YDR177W	DFG10	P40526	253 aa		4.25	□□□□□ -1.73
UBC1	YDR177W	YNL320W	P42840	284 aa		4.25	□□□□□ -1.73
UBC1	YDR177W	AGP3	P43548	558 aa		4.25	□□□□□ -1.73
UBC1	YDR177W	OTU1	P43558	301 aa		4.25	□□□□□ -1.73
UBC1	YDR177W	YAR1	P46683	200 aa		4.25	□□□□□ -1.73
UBC1	YDR177W	BIO4	P53630	237 aa		4.25	□□□□□ -1.73
UBC1	YDR177W	PBP4	Q07362	185 aa	Known RBP	4.25	□□□□□ -1.73
UBC1	YDR177W	RGT2	Q12300	763 aa		4.25	□□□□□ -1.73
UBC1	YDR177W	PCL9	Q12477	304 aa		4.25	□□□□□ -1.73
UBC1	YDR177W	CFT1	Q06632	1357 aa	Known RBP	4.25	□□□□□ -1.73
UBC1	YDR177W	PAN1	P32521	1480 aa		4.24	□□□□□ -1.73
UBC1	YDR177W	ILV1	P00927	576 aa	Known RBP	4.24	□□□□□ -1.73
UBC1	YDR177W	PIS1	P06197	220 aa	Known RBP	4.24	□□□□□ -1.73
UBC1	YDR177W	SSC1	P0CS90	654 aa	Known RBP	4.24	□□□□□ -1.73
UBC1	YDR177W	MDM10	P18409	493 aa		4.24	□□□□□ -1.73
UBC1	YDR177W	MKK1	P32490	508 aa		4.24	□□□□□ -1.73
UBC1	YDR177W	KAR9	P32526	644 aa		4.24	□□□□□ -1.73
UBC1	YDR177W	IMP3	P32899	183 aa	Predicted RBP	4.24	□□□□□ -1.73
UBC1	YDR177W	COS9	P36034	407 aa		4.24	□□□□□ -1.73
UBC1	YDR177W	GPX2	P38143	162 aa		4.24	□□□□□ -1.73
UBC1	YDR177W	SIP3	P38717	1229 aa		4.24	□□□□□ -1.73
UBC1	YDR177W	MAM33	P40513	266 aa		4.24	□□□□□ -1.73
UBC1	YDR177W	YIA6	P40556	373 aa		4.24	□□□□□ -1.73
UBC1	YDR177W	YJL118W	P47022	219 aa		4.24	□□□□□ -1.73
UBC1	YDR177W	HXT11	P54862	567 aa		4.24	□□□□□ -1.73
UBC1	YDR177W	SED5	Q01590	340 aa		4.24	□□□□□ -1.73
UBC1	YDR177W	YPL077C	Q02831	240 aa		4.24	□□□□□ -1.73
UBC1	YDR177W	BNA7	Q04066	261 aa		4.24	□□□□□ -1.73
UBC1	YDR177W	YLR283W	Q05867	314 aa		4.24	□□□□□ -1.73
UBC1	YDR177W	SSQ1	Q05931	657 aa	Predicted RBP	4.24	□□□□□ -1.73
UBC1	YDR177W	PAM18	Q07914	168 aa		4.24	□□□□□ -1.73
UBC1	YDR177W	DSE3	Q08729	430 aa		4.24	□□□□□ -1.73
UBC1	YDR177W	MMS22	Q06164	1454 aa		4.24	□□□□□ -1.73
UBC1	YDR177W	COX2	P00410	251 aa		4.23	□□□□□ -1.73
UBC1	YDR177W	MET16	P18408	261 aa	Predicted RBP	4.23	□□□□□ -1.73
UBC1	YDR177W	MRPL25	P23369	157 aa		4.23	□□□□□ -1.73
UBC1	YDR177W	RRT12	P25381	491 aa		4.23	□□□□□ -1.73
UBC1	YDR177W	CWP1	P28319	239 aa		4.23	□□□□□ -1.73
UBC1	YDR177W	DHH1	P39517	506 aa	Known RBP	4.23	□□□□□ -1.73
UBC1	YDR177W	PRM9	P39551	298 aa		4.23	□□□□□ -1.73
UBC1	YDR177W	YIL029C	P40538	142 aa		4.23	□□□□□ -1.73
UBC1	YDR177W	RRT5	P43607	289 aa		4.23	□□□□□ -1.73
UBC1	YDR177W	TIM21	P53220	239 aa		4.23	□□□□□ -1.73
UBC1	YDR177W	ALG11	P53954	548 aa	Known RBP	4.23	□□□□□ -1.73
UBC1	YDR177W	ARK1	P53974	638 aa		4.23	□□□□□ -1.73
UBC1	YDR177W	RPL15B	P54780	204 aa	Predicted RBP	4.23	□□□□□ -1.73
UBC1	YDR177W	YPL080C	Q02826	108 aa		4.23	□□□□□ -1.73
UBC1	YDR177W	CSM3	Q04659	317 aa		4.23	□□□□□ -1.73
UBC1	YDR177W	MDM36	Q06820	579 aa		4.23	□□□□□ -1.73
UBC1	YDR177W	APC9	Q12107	265 aa		4.23	□□□□□ -1.73
UBC1	YDR177W	EAF3	Q12432	401 aa		4.23	□□□□□ -1.73

Retrieved 100 of 5,963 RNA–protein pairs in 45.7 ms