RNA–Protein interactions for RNA: ENST00000551516.1

CPSF6-207, Transcript of cleavage and polyadenylation specific factor 6, humanhuman

TSL 2 BASIC

Gene CPSF6, Length 234 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF6-207ENST00000551516 PLAGL2Q9UPG8 496 aa3.04□□□□□ -1.92
CPSF6-207ENST00000551516 SCAF8Q9UPN6 1271 aaKnown RBP3.04□□□□□ -1.92
CPSF6-207ENST00000551516 PCDHAC2Q9Y5I4 1007 aa3.04□□□□□ -1.92
CPSF6-207ENST00000551516 KDM3BQ7LBC6 1761 aa3.04□□□□□ -1.92
CPSF6-207ENST00000551516 SH3TC1Q8TE82 1336 aa3.03□□□□□ -1.92
CPSF6-207ENST00000551516 GSG1L2A8MUP6 293 aa3.03□□□□□ -1.92
CPSF6-207ENST00000551516 SNAP23O00161 211 aa3.03□□□□□ -1.92
CPSF6-207ENST00000551516 WNT10BO00744 389 aa3.03□□□□□ -1.92
CPSF6-207ENST00000551516 MSTNO14793 375 aa3.03□□□□□ -1.92
CPSF6-207ENST00000551516 GSTA4O15217 222 aa3.03□□□□□ -1.92
CPSF6-207ENST00000551516 FGF10O15520 208 aaPredicted RBP3.03□□□□□ -1.92
CPSF6-207ENST00000551516 RAB11FIP3O75154 756 aa3.03□□□□□ -1.92
CPSF6-207ENST00000551516 CRTAMO95727 393 aa3.03□□□□□ -1.92
CPSF6-207ENST00000551516 HOXB7P09629 217 aa3.03□□□□□ -1.92
CPSF6-207ENST00000551516 JMJD7P0C870 316 aa3.03□□□□□ -1.92
CPSF6-207ENST00000551516 U2AF1L5P0DN76 240 aaPredicted RBP3.03□□□□□ -1.92
CPSF6-207ENST00000551516 MYL6BP14649 208 aa3.03□□□□□ -1.92
CPSF6-207ENST00000551516 POU3F2P20265 443 aaPredicted RBP3.03□□□□□ -1.92
CPSF6-207ENST00000551516 LTBRP36941 435 aa3.03□□□□□ -1.92
CPSF6-207ENST00000551516 GRIK1P39086 918 aa3.03□□□□□ -1.92
CPSF6-207ENST00000551516 SOX10P56693 466 aa3.03□□□□□ -1.92
CPSF6-207ENST00000551516 HUNKP57058 714 aa3.03□□□□□ -1.92
CPSF6-207ENST00000551516 RPS8P62241 208 aaKnown RBP3.03□□□□□ -1.92
CPSF6-207ENST00000551516 FKBP1BP68106 108 aa3.03□□□□□ -1.92
CPSF6-207ENST00000551516 U2AF1Q01081 240 aaKnown RBP eCLIP3.03□□□□□ -1.921e-7■■■■■ 28
CPSF6-207ENST00000551516 CYP4F3Q08477 520 aa3.03□□□□□ -1.92
CPSF6-207ENST00000551516 LAPTM5Q13571 262 aa3.03□□□□□ -1.92
CPSF6-207ENST00000551516 SART3Q15020 963 aaKnown RBP3.03□□□□□ -1.92
CPSF6-207ENST00000551516 TNIP1Q15025 636 aa3.03□□□□□ -1.92
CPSF6-207ENST00000551516 TESK1Q15569 626 aa3.03□□□□□ -1.92
CPSF6-207ENST00000551516 RSPO4Q2I0M5 234 aaPredicted RBP3.03□□□□□ -1.92
CPSF6-207ENST00000551516 GAB4Q2WGN9 574 aa3.03□□□□□ -1.92
CPSF6-207ENST00000551516 CFAP100Q494V2 611 aa3.03□□□□□ -1.92
CPSF6-207ENST00000551516 TBC1D10BQ4KMP7 808 aaPredicted RBP3.03□□□□□ -1.92
CPSF6-207ENST00000551516 PRAMEF18Q5VWM3 479 aa3.03□□□□□ -1.92
CPSF6-207ENST00000551516 HLA-DQA1Q5Y7H0 255 aa3.03□□□□□ -1.92
CPSF6-207ENST00000551516 CDCA2Q69YH5 1023 aaPredicted RBP3.03□□□□□ -1.92
CPSF6-207ENST00000551516 DENND5AQ6IQ26 1287 aa3.03□□□□□ -1.92
CPSF6-207ENST00000551516 RNF180Q86T96 592 aa3.03□□□□□ -1.92
CPSF6-207ENST00000551516 DDX53Q86TM3 631 aaKnown RBP3.03□□□□□ -1.92
CPSF6-207ENST00000551516 CPNE8Q86YQ8 564 aa3.03□□□□□ -1.92
CPSF6-207ENST00000551516 ZDHHC13Q8IUH4 622 aa3.03□□□□□ -1.92
CPSF6-207ENST00000551516 ZC3H7AQ8IWR0 971 aaKnown RBP3.03□□□□□ -1.92
CPSF6-207ENST00000551516 AGBL3Q8NEM8 1001 aa3.03□□□□□ -1.92
CPSF6-207ENST00000551516 TTLL11Q8NHH1 800 aa3.03□□□□□ -1.92
CPSF6-207ENST00000551516 ATL2Q8NHH9 583 aa3.03□□□□□ -1.92
CPSF6-207ENST00000551516 PLBD2Q8NHP8 589 aa3.03□□□□□ -1.92
CPSF6-207ENST00000551516 PUM2Q8TB72 1066 aaKnown RBP eCLIP3.03□□□□□ -1.92
CPSF6-207ENST00000551516 PNISRQ8TF01 805 aaKnown RBP3.03□□□□□ -1.92
CPSF6-207ENST00000551516 LEO1Q8WVC0 666 aaPredicted RBP3.03□□□□□ -1.92
CPSF6-207ENST00000551516 MISP3Q96FF7 219 aa3.03□□□□□ -1.92
CPSF6-207ENST00000551516 FAM89AQ96GI7 184 aa3.03□□□□□ -1.92
CPSF6-207ENST00000551516 RBM17Q96I25 401 aaKnown RBP3.03□□□□□ -1.92
CPSF6-207ENST00000551516 KAZALD1Q96I82 304 aa3.03□□□□□ -1.92
CPSF6-207ENST00000551516 WNK4Q96J92 1243 aa3.03□□□□□ -1.92
CPSF6-207ENST00000551516 PTCHD1Q96NR3 888 aa3.03□□□□□ -1.92
CPSF6-207ENST00000551516 CEP89Q96ST8 783 aa3.03□□□□□ -1.92
CPSF6-207ENST00000551516 MXD3Q9BW11 206 aa3.03□□□□□ -1.92
CPSF6-207ENST00000551516 DBNDD1Q9H9R9 158 aa3.03□□□□□ -1.92
CPSF6-207ENST00000551516 METTL14Q9HCE5 456 aaKnown RBP3.03□□□□□ -1.92
CPSF6-207ENST00000551516 HOMER2Q9NSB8 354 aa3.03□□□□□ -1.92
CPSF6-207ENST00000551516 AP5S1Q9NUS5 200 aa3.03□□□□□ -1.92
CPSF6-207ENST00000551516 TMEFF2Q9UIK5 374 aaPredicted RBP3.03□□□□□ -1.92
CPSF6-207ENST00000551516 ZNF652Q9Y2D9 606 aa3.03□□□□□ -1.92
CPSF6-207ENST00000551516 ATP8A1Q9Y2Q0 1164 aa3.03□□□□□ -1.92
CPSF6-207ENST00000551516 RRP7AQ9Y3A4 280 aaKnown RBP3.03□□□□□ -1.92
CPSF6-207ENST00000551516 PCDHA9Q9Y5H5 950 aa3.03□□□□□ -1.92
CPSF6-207ENST00000551516 PCDHA8Q9Y5H6 950 aa3.03□□□□□ -1.92
CPSF6-207ENST00000551516 PCDHA11Q9Y5I1 949 aa3.03□□□□□ -1.92
CPSF6-207ENST00000551516 TNPO3Q9Y5L0 923 aaKnown RBP3.03□□□□□ -1.92
CPSF6-207ENST00000551516 NPFFR2Q9Y5X5 522 aa3.03□□□□□ -1.92
CPSF6-207ENST00000551516 U3KQE9 123 aa3.03□□□□□ -1.92
CPSF6-207ENST00000551516 CASP8AP2Q9UKL3 1982 aa3.03□□□□□ -1.92
CPSF6-207ENST00000551516 CHD9Q3L8U1 2897 aa3.02□□□□□ -1.93
CPSF6-207ENST00000551516 CDH23Q9H251 3354 aa3.02□□□□□ -1.93
CPSF6-207ENST00000551516 ADGRA2Q96PE1 1338 aa3.02□□□□□ -1.93
CPSF6-207ENST00000551516 A0A1W2PQ27 194 aa3.02□□□□□ -1.93
CPSF6-207ENST00000551516 A0A1W2PQ64 194 aa3.02□□□□□ -1.93
CPSF6-207ENST00000551516 A0A1W2PQC6 194 aa3.02□□□□□ -1.93
CPSF6-207ENST00000551516 A0A1W2PQD8 194 aa3.02□□□□□ -1.93
CPSF6-207ENST00000551516 TCRBV16S1A1N1A0A5B0 115 aa3.02□□□□□ -1.93
CPSF6-207ENST00000551516 PRR19A6NJB7 356 aa3.02□□□□□ -1.93
CPSF6-207ENST00000551516 ALG1L2C9J202 215 aa3.02□□□□□ -1.93
CPSF6-207ENST00000551516 FAM47E-STBD1D6RA91 191 aa3.02□□□□□ -1.93
CPSF6-207ENST00000551516 DYRK3O43781 588 aa3.02□□□□□ -1.93
CPSF6-207ENST00000551516 ECE2O60344 883 aa3.02□□□□□ -1.93
CPSF6-207ENST00000551516 NPHS1O60500 1241 aa3.02□□□□□ -1.93
CPSF6-207ENST00000551516 KPNA6O60684 536 aa3.02□□□□□ -1.93
CPSF6-207ENST00000551516 RASGRP1O95267 797 aa3.02□□□□□ -1.93
CPSF6-207ENST00000551516 ESR1P03372 595 aa3.02□□□□□ -1.93
CPSF6-207ENST00000551516 PCCAP05165 728 aaPredicted RBP3.02□□□□□ -1.93
CPSF6-207ENST00000551516 LCP1P13796 627 aa3.02□□□□□ -1.93
CPSF6-207ENST00000551516 SCNN1BP51168 640 aa3.02□□□□□ -1.93
CPSF6-207ENST00000551516 RPL11P62913 178 aaKnown RBP3.02□□□□□ -1.93
CPSF6-207ENST00000551516 DUSP4Q13115 394 aa3.02□□□□□ -1.93
CPSF6-207ENST00000551516 PAK1Q13153 545 aa3.02□□□□□ -1.93
CPSF6-207ENST00000551516 LSAMPQ13449 338 aa3.02□□□□□ -1.93
CPSF6-207ENST00000551516 PCBP1Q15365 356 aaKnown RBP eCLIP3.02□□□□□ -1.937e-11■□□□□ 8.4
CPSF6-207ENST00000551516 KIZQ2M2Z5 673 aa3.02□□□□□ -1.93
CPSF6-207ENST00000551516 FAM47CQ5HY64 1035 aa3.02□□□□□ -1.93
Retrieved 100 of 20,778 RNA–protein pairs in 54.8 ms