RNA–Protein interactions for RNA: YMR247C

RKR1, Transcript of RING domain E3 ubiquitin ligase, yeast

Gene RKR1, Length 4,689 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
RKR1	YMR247C	UBX2	Q04228	584 aa		0.79	□□□□□ -2.28
RKR1	YMR247C	SGT2	Q12118	346 aa	Known RBP	0.79	□□□□□ -2.28
RKR1	YMR247C	ORT1	Q12375	292 aa		0.79	□□□□□ -2.28
RKR1	YMR247C	MLP1	Q02455	1875 aa	Known RBP	0.79	□□□□□ -2.28
RKR1	YMR247C	SAC3	P46674	1301 aa		0.79	□□□□□ -2.28
RKR1	YMR247C	RPS19A	P07280	144 aa	Known RBP	0.79	□□□□□ -2.28
RKR1	YMR247C	RPS19B	P07281	144 aa	Predicted RBP	0.79	□□□□□ -2.28
RKR1	YMR247C	SAM1	P10659	382 aa	Known RBP	0.79	□□□□□ -2.28
RKR1	YMR247C	ARF2	P19146	181 aa	Known RBP	0.79	□□□□□ -2.28
RKR1	YMR247C	OSM1	P21375	501 aa	Known RBP	0.79	□□□□□ -2.28
RKR1	YMR247C	PHA2	P32452	334 aa		0.79	□□□□□ -2.28
RKR1	YMR247C	ZUO1	P32527	433 aa	Known RBP	0.79	□□□□□ -2.28
RKR1	YMR247C	BUD2	P33314	1104 aa		0.79	□□□□□ -2.28
RKR1	YMR247C	SKN1	P33336	771 aa		0.79	□□□□□ -2.28
RKR1	YMR247C	ECT1	P33412	323 aa		0.79	□□□□□ -2.28
RKR1	YMR247C	BLI1	P35727	113 aa		0.79	□□□□□ -2.28
RKR1	YMR247C	ANR2	P36090	516 aa	Predicted RBP	0.79	□□□□□ -2.28
RKR1	YMR247C	YHR035W	P38769	630 aa		0.79	□□□□□ -2.28
RKR1	YMR247C	WSS1	P38838	269 aa		0.79	□□□□□ -2.28
RKR1	YMR247C	CHL4	P38907	458 aa		0.79	□□□□□ -2.28
RKR1	YMR247C	CHS6	P40955	746 aa		0.79	□□□□□ -2.28
RKR1	YMR247C	WWM1	P43582	211 aa	Known RBP	0.79	□□□□□ -2.28
RKR1	YMR247C	EFM3	P47163	339 aa		0.79	□□□□□ -2.28
RKR1	YMR247C	FLC3	P53121	802 aa		0.79	□□□□□ -2.28
RKR1	YMR247C	YGR067C	P53243	804 aa		0.79	□□□□□ -2.28
RKR1	YMR247C	ADA2	Q02336	434 aa		0.79	□□□□□ -2.28
RKR1	YMR247C	DNL4	Q08387	944 aa	Predicted RBP	0.79	□□□□□ -2.28
RKR1	YMR247C	VIK1	Q12045	647 aa		0.79	□□□□□ -2.28
RKR1	YMR247C	TY3A-G	Q12173	290 aa		0.79	□□□□□ -2.28
RKR1	YMR247C	HRT3	Q12347	344 aa		0.79	□□□□□ -2.28
RKR1	YMR247C	TY3A-I	Q99219	290 aa		0.79	□□□□□ -2.28
RKR1	YMR247C	MMS22	Q06164	1454 aa		0.79	□□□□□ -2.28
RKR1	YMR247C	FKS1	P38631	1876 aa	Known RBP	0.79	□□□□□ -2.28
RKR1	YMR247C	NAM2	P11325	894 aa		0.79	□□□□□ -2.28
RKR1	YMR247C	OPI1	P21957	404 aa		0.79	□□□□□ -2.28
RKR1	YMR247C	SLY1	P22213	666 aa		0.79	□□□□□ -2.28
RKR1	YMR247C	BMH1	P29311	267 aa	Known RBP	0.79	□□□□□ -2.28
RKR1	YMR247C	HXT3	P32466	567 aa	Known RBP	0.79	□□□□□ -2.28
RKR1	YMR247C	TIP20	P33891	701 aa		0.79	□□□□□ -2.28
RKR1	YMR247C	ASC1	P38011	319 aa	Known RBP	0.79	□□□□□ -2.28
RKR1	YMR247C	ZTA1	P38230	334 aa	Known RBP	0.79	□□□□□ -2.28
RKR1	YMR247C	YHL044W	P38727	235 aa		0.79	□□□□□ -2.28
RKR1	YMR247C	LRP1	P38801	184 aa	Known RBP	0.79	□□□□□ -2.28
RKR1	YMR247C	MNL1	P38888	796 aa		0.79	□□□□□ -2.28
RKR1	YMR247C	PSD1	P39006	500 aa		0.79	□□□□□ -2.28
RKR1	YMR247C	FRT2	P39734	528 aa		0.79	□□□□□ -2.28
RKR1	YMR247C	GDI1	P39958	451 aa	Known RBP	0.79	□□□□□ -2.28
RKR1	YMR247C	SYG1	P40528	902 aa		0.79	□□□□□ -2.28
RKR1	YMR247C	COQ5	P49017	307 aa		0.79	□□□□□ -2.28
RKR1	YMR247C	ATP22	P50273	684 aa	Predicted RBP	0.79	□□□□□ -2.28
RKR1	YMR247C	YPS5	P53057	165 aa		0.79	□□□□□ -2.28
RKR1	YMR247C	ART5	P53244	586 aa	Known RBP	0.79	□□□□□ -2.28
RKR1	YMR247C	FRE4	P53746	719 aa		0.79	□□□□□ -2.28
RKR1	YMR247C	RNH201	P53942	307 aa		0.79	□□□□□ -2.28
RKR1	YMR247C	SMP3	Q04174	516 aa		0.79	□□□□□ -2.28
RKR1	YMR247C	BCP1	Q06338	283 aa		0.79	□□□□□ -2.28
RKR1	YMR247C	SMF3	Q12078	473 aa	Predicted RBP	0.79	□□□□□ -2.28
RKR1	YMR247C	DNF1	P32660	1571 aa		0.78	□□□□□ -2.28
RKR1	YMR247C	DST1	P07273	309 aa		0.78	□□□□□ -2.28
RKR1	YMR247C	MER1	P16523	270 aa		0.78	□□□□□ -2.28
RKR1	YMR247C	EPT1	P22140	391 aa		0.78	□□□□□ -2.28
RKR1	YMR247C	YEL043W	P32618	956 aa		0.78	□□□□□ -2.28
RKR1	YMR247C	SWE1	P32944	819 aa		0.78	□□□□□ -2.28
RKR1	YMR247C	SOR1	P35497	357 aa	Known RBP	0.78	□□□□□ -2.28
RKR1	YMR247C	TRR2	P38816	342 aa		0.78	□□□□□ -2.28
RKR1	YMR247C	VPS45	P38932	577 aa		0.78	□□□□□ -2.28
RKR1	YMR247C	LYS12	P40495	371 aa	Known RBP	0.78	□□□□□ -2.28
RKR1	YMR247C	VMA13	P41807	478 aa	Known RBP	0.78	□□□□□ -2.28
RKR1	YMR247C	YJL055W	P47044	245 aa		0.78	□□□□□ -2.28
RKR1	YMR247C	AZR1	P50080	613 aa		0.78	□□□□□ -2.28
RKR1	YMR247C	MRM2	P53123	320 aa		0.78	□□□□□ -2.28
RKR1	YMR247C	REX2	P54964	269 aa	Known RBP	0.78	□□□□□ -2.28
RKR1	YMR247C	YET2	Q04210	160 aa		0.78	□□□□□ -2.28
RKR1	YMR247C	YDL057W	Q07379	328 aa		0.78	□□□□□ -2.28
RKR1	YMR247C	THP3	Q12049	470 aa	Known RBP	0.78	□□□□□ -2.28
RKR1	YMR247C	HKR1	P41809	1802 aa		0.78	□□□□□ -2.28
RKR1	YMR247C	TOM1	Q03280	3268 aa		0.78	□□□□□ -2.28
RKR1	YMR247C	BCK1	Q01389	1478 aa		0.78	□□□□□ -2.28
RKR1	YMR247C	VPS63	O13549	108 aa		0.78	□□□□□ -2.28
RKR1	YMR247C	TPK3	P05986	398 aa		0.78	□□□□□ -2.28
RKR1	YMR247C	INO2	P26798	304 aa		0.78	□□□□□ -2.28
RKR1	YMR247C	URA10	P30402	227 aa		0.78	□□□□□ -2.28
RKR1	YMR247C	SPS19	P32573	292 aa	Known RBP	0.78	□□□□□ -2.28
RKR1	YMR247C	NRP1	P32770	719 aa	Known RBP RIP-Chip data	0.78	□□□□□ -2.28	not detected
RKR1	YMR247C	TIR2	P33890	251 aa		0.78	□□□□□ -2.28
RKR1	YMR247C	YKL097C	P34245	136 aa		0.78	□□□□□ -2.28
RKR1	YMR247C	SHC1	P39000	512 aa		0.78	□□□□□ -2.28
RKR1	YMR247C	AIM10	P39965	576 aa	Known RBP	0.78	□□□□□ -2.28
RKR1	YMR247C	YEL068C	P39977	110 aa		0.78	□□□□□ -2.28
RKR1	YMR247C	AVT4	P50944	713 aa		0.78	□□□□□ -2.28
RKR1	YMR247C	RRT6	P53117	311 aa	Predicted RBP	0.78	□□□□□ -2.28
RKR1	YMR247C	CUE3	P53137	624 aa	Known RBP	0.78	□□□□□ -2.28
RKR1	YMR247C	YLR456W	Q06199	204 aa		0.78	□□□□□ -2.28
RKR1	YMR247C	YPR091C	Q06833	770 aa		0.78	□□□□□ -2.28
RKR1	YMR247C	UAF30	Q08747	228 aa		0.78	□□□□□ -2.28
RKR1	YMR247C	SMC6	Q12749	1114 aa		0.78	□□□□□ -2.28
RKR1	YMR247C	RIM15	P43565	1770 aa		0.78	□□□□□ -2.28
RKR1	YMR247C	SNQ2	P32568	1501 aa	Known RBP	0.78	□□□□□ -2.28
RKR1	YMR247C	CDC21	P06785	304 aa		0.78	□□□□□ -2.29
RKR1	YMR247C	UNG1	P12887	359 aa		0.78	□□□□□ -2.29

Retrieved 100 of 5,963 RNA–protein pairs in 62.6 ms