RNA–Protein interactions for RNA: YML029W

USA1, Transcript of Scaffold subunit of the Hrd1p ubiquitin ligase, yeast

Gene USA1, Length 2,517 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
USA1	YML029W	YCR102C	P25608	368 aa		3.59	□□□□□ -1.83
USA1	YML029W	MKK1	P32490	508 aa		3.59	□□□□□ -1.83
USA1	YML029W	RTG1	P32607	177 aa		3.59	□□□□□ -1.83
USA1	YML029W	MRPL6	P32904	214 aa		3.59	□□□□□ -1.83
USA1	YML029W	LHP1	P33399	275 aa	Known RBP	3.59	□□□□□ -1.83
USA1	YML029W	BAP2	P38084	609 aa		3.59	□□□□□ -1.83
USA1	YML029W	BNA3	P47039	444 aa	Known RBP	3.59	□□□□□ -1.83
USA1	YML029W	JHD2	P47156	728 aa	Predicted RBP	3.59	□□□□□ -1.83
USA1	YML029W	SUR7	P54003	302 aa		3.59	□□□□□ -1.83
USA1	YML029W	DCR2	Q05924	578 aa		3.59	□□□□□ -1.83
USA1	YML029W	YOL073C	Q08232	322 aa		3.59	□□□□□ -1.83
USA1	YML029W	PUS7	Q08647	676 aa	Known RBP	3.59	□□□□□ -1.83
USA1	YML029W	RSA1	Q08932	381 aa		3.59	□□□□□ -1.83
USA1	YML029W	RIB3	Q99258	208 aa		3.59	□□□□□ -1.83
USA1	YML029W	UBC8	P28263	218 aa		3.59	□□□□□ -1.84
USA1	YML029W	FES1	P38260	290 aa		3.59	□□□□□ -1.84
USA1	YML029W	BIG1	P38813	335 aa		3.59	□□□□□ -1.84
USA1	YML029W	ZRG8	P40021	1076 aa		3.59	□□□□□ -1.84
USA1	YML029W	PKP1	P40530	394 aa		3.59	□□□□□ -1.84
USA1	YML029W	TED1	P40533	473 aa		3.59	□□□□□ -1.84
USA1	YML029W	CDH1	P53197	566 aa		3.59	□□□□□ -1.84
USA1	YML029W	YGR079W	P53249	370 aa		3.59	□□□□□ -1.84
USA1	YML029W	DCP2	P53550	970 aa	Known RBP	3.59	□□□□□ -1.84
USA1	YML029W	SPC19	Q03954	165 aa		3.59	□□□□□ -1.84
USA1	YML029W	REH1	Q06709	432 aa		3.59	□□□□□ -1.84
USA1	YML029W	DTD1	Q07648	150 aa	Known RBP	3.59	□□□□□ -1.84
USA1	YML029W	LOT6	Q07923	191 aa		3.59	□□□□□ -1.84
USA1	YML029W	RAX1	Q08760	435 aa		3.59	□□□□□ -1.84
USA1	YML029W	SKS1	Q12505	502 aa		3.59	□□□□□ -1.84
USA1	YML029W	HFA1	P32874	2273 aa		3.58	□□□□□ -1.84
USA1	YML029W	MF(ALPHA)1	P01149	165 aa		3.58	□□□□□ -1.84
USA1	YML029W	MCK1	P21965	375 aa	Known RBP	3.58	□□□□□ -1.84
USA1	YML029W	YIM1	P28625	365 aa		3.58	□□□□□ -1.84
USA1	YML029W	BCK2	P33306	851 aa		3.58	□□□□□ -1.84
USA1	YML029W	ECM15	P35195	104 aa		3.58	□□□□□ -1.84
USA1	YML029W	PDS1	P40316	373 aa	Predicted RBP	3.58	□□□□□ -1.84
USA1	YML029W	SHR5	P41912	237 aa		3.58	□□□□□ -1.84
USA1	YML029W	FAR7	P43592	221 aa		3.58	□□□□□ -1.84
USA1	YML029W	YGR067C	P53243	804 aa		3.58	□□□□□ -1.84
USA1	YML029W	COG5	P53951	403 aa		3.58	□□□□□ -1.84
USA1	YML029W	YSA1	Q01976	231 aa		3.58	□□□□□ -1.84
USA1	YML029W	NOG1	Q02892	647 aa	Known RBP	3.58	□□□□□ -1.84
USA1	YML029W	RSA3	Q05942	220 aa	Known RBP	3.58	□□□□□ -1.84
USA1	YML029W	YLR446W	Q06204	433 aa		3.58	□□□□□ -1.84
USA1	YML029W	YDL211C	Q12121	372 aa		3.58	□□□□□ -1.84
USA1	YML029W	RHO1	P06780	209 aa	Known RBP	3.58	□□□□□ -1.84
USA1	YML029W	CDC4	P07834	779 aa		3.58	□□□□□ -1.84
USA1	YML029W	ERG8	P24521	451 aa		3.58	□□□□□ -1.84
USA1	YML029W	PTP2	P29461	750 aa		3.58	□□□□□ -1.84
USA1	YML029W	SEC61	P32915	480 aa		3.58	□□□□□ -1.84
USA1	YML029W	TUL1	P36096	758 aa		3.58	□□□□□ -1.84
USA1	YML029W	YLF2	P38746	405 aa		3.58	□□□□□ -1.84
USA1	YML029W	YHR210C	P38893	341 aa		3.58	□□□□□ -1.84
USA1	YML029W	PTI1	P39927	425 aa	Predicted RBP	3.58	□□□□□ -1.84
USA1	YML029W	SEH1	P53011	349 aa	Known RBP	3.58	□□□□□ -1.84
USA1	YML029W	LSG1	P53145	640 aa	Known RBP	3.58	□□□□□ -1.84
USA1	YML029W	YGR168C	P53293	376 aa		3.58	□□□□□ -1.84
USA1	YML029W	ELA1	P53861	379 aa	Predicted RBP	3.58	□□□□□ -1.84
USA1	YML029W	YNL181W	P53878	407 aa		3.58	□□□□□ -1.84
USA1	YML029W	NCE101	Q02820	53 aa		3.58	□□□□□ -1.84
USA1	YML029W	KRE28	Q04431	385 aa		3.58	□□□□□ -1.84
USA1	YML029W	NOP12	Q08208	459 aa	Known RBP	3.58	□□□□□ -1.84
USA1	YML029W	TPO4	Q12256	659 aa		3.58	□□□□□ -1.84
USA1	YML029W	FAS1	P07149	2051 aa	Known RBP	3.57	□□□□□ -1.84
USA1	YML029W	YSF3	P0C074	85 aa	Predicted RBP	3.57	□□□□□ -1.84
USA1	YML029W	TFS1	P14306	219 aa		3.57	□□□□□ -1.84
USA1	YML029W	ERD1	P16151	362 aa		3.57	□□□□□ -1.84
USA1	YML029W	RER1	P25560	188 aa		3.57	□□□□□ -1.84
USA1	YML029W	CYS4	P32582	507 aa	Known RBP	3.57	□□□□□ -1.84
USA1	YML029W	MRT4	P33201	236 aa	Known RBP	3.57	□□□□□ -1.84
USA1	YML029W	GDH2	P33327	1092 aa	Known RBP	3.57	□□□□□ -1.84
USA1	YML029W	AIM46	P38885	310 aa		3.57	□□□□□ -1.84
USA1	YML029W	ALP1	P38971	573 aa		3.57	□□□□□ -1.84
USA1	YML029W	YAR028W	P39548	234 aa		3.57	□□□□□ -1.84
USA1	YML029W	YER184C	P39961	794 aa		3.57	□□□□□ -1.84
USA1	YML029W	ISC1	P40015	477 aa	Known RBP	3.57	□□□□□ -1.84
USA1	YML029W	YRB2	P40517	327 aa		3.57	□□□□□ -1.84
USA1	YML029W	SMK1	P41808	388 aa		3.57	□□□□□ -1.84
USA1	YML029W	CHA4	P43634	648 aa		3.57	□□□□□ -1.84
USA1	YML029W	YJR141W	P47172	347 aa	Predicted RBP	3.57	□□□□□ -1.84
USA1	YML029W	ECL1	P48235	211 aa		3.57	□□□□□ -1.84
USA1	YML029W	NUP57	P48837	541 aa		3.57	□□□□□ -1.84
USA1	YML029W	EXG2	P52911	562 aa		3.57	□□□□□ -1.84
USA1	YML029W	YGL235W	P53071	178 aa		3.57	□□□□□ -1.84
USA1	YML029W	MPC1	P53157	130 aa	Known RBP	3.57	□□□□□ -1.84
USA1	YML029W	YDR249C	Q03787	373 aa		3.57	□□□□□ -1.84
USA1	YML029W	ERB1	Q04660	807 aa	Known RBP	3.57	□□□□□ -1.84
USA1	YML029W	NAT4	Q04751	285 aa		3.57	□□□□□ -1.84
USA1	YML029W	BUR2	Q05949	395 aa		3.57	□□□□□ -1.84
USA1	YML029W	SWA2	Q06677	668 aa		3.57	□□□□□ -1.84
USA1	YML029W	SYO1	Q07395	620 aa		3.57	□□□□□ -1.84
USA1	YML029W	DCI1	Q08558	271 aa		3.57	□□□□□ -1.84
USA1	YML029W	GRE1	Q08969	168 aa		3.57	□□□□□ -1.84
USA1	YML029W	TAD3	Q9URQ3	322 aa		3.57	□□□□□ -1.84
USA1	YML029W	BAR1	P12630	587 aa		3.56	□□□□□ -1.84
USA1	YML029W	SAC1	P32368	623 aa	Known RBP	3.56	□□□□□ -1.84
USA1	YML029W	DAL3	P32459	195 aa		3.56	□□□□□ -1.84
USA1	YML029W	GSH1	P32477	678 aa		3.56	□□□□□ -1.84
USA1	YML029W	AUR1	P36107	401 aa	Predicted RBP	3.56	□□□□□ -1.84
USA1	YML029W	YBR285W	P38354	144 aa		3.56	□□□□□ -1.84

Retrieved 100 of 5,963 RNA–protein pairs in 20.8 ms