RNA–Protein interactions for RNA: YKR001C

VPS1, Transcript of Dynamin-like GTPase required for vacuolar sorting, yeastyeast

Gene VPS1, Length 2,115 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
VPS1YKR001C MET16P18408 261 aaPredicted RBP5.17□□□□□ -1.58
VPS1YKR001C PRE1P22141 198 aaKnown RBP5.17□□□□□ -1.58
VPS1YKR001C BEM1P29366 551 aa5.17□□□□□ -1.58
VPS1YKR001C VMA5P31412 392 aaKnown RBP5.17□□□□□ -1.58
VPS1YKR001C AFG1P32317 509 aa5.17□□□□□ -1.58
VPS1YKR001C ABD1P32783 436 aaPredicted RBP5.17□□□□□ -1.58
VPS1YKR001C BCK2P33306 851 aa5.17□□□□□ -1.58
VPS1YKR001C YKR078WP36158 585 aaKnown RBP5.17□□□□□ -1.58
VPS1YKR001C YPT35P38815 214 aaKnown RBP5.17□□□□□ -1.58
VPS1YKR001C DUN1P39009 513 aa5.17□□□□□ -1.58
VPS1YKR001C PRP39P39682 629 aaKnown RBP5.17□□□□□ -1.58
VPS1YKR001C SEO1P39709 593 aa5.17□□□□□ -1.58
VPS1YKR001C YJL043WP47053 257 aa5.17□□□□□ -1.58
VPS1YKR001C YJR149WP47177 404 aa5.17□□□□□ -1.58
VPS1YKR001C NRK1P53915 240 aa5.17□□□□□ -1.58
VPS1YKR001C ERG5P54781 538 aa5.17□□□□□ -1.58
VPS1YKR001C YDR124WQ04608 324 aa5.17□□□□□ -1.58
VPS1YKR001C SYC1Q08553 188 aaPredicted RBP5.17□□□□□ -1.58
VPS1YKR001C YPQ1Q12010 308 aa5.17□□□□□ -1.58
VPS1YKR001C SWT1Q12104 458 aa5.17□□□□□ -1.58
VPS1YKR001C RUP1Q12242 671 aa5.17□□□□□ -1.58
VPS1YKR001C YDR061WQ12298 539 aa5.17□□□□□ -1.58
VPS1YKR001C ARG4P04076 463 aaPredicted RBP5.16□□□□□ -1.58
VPS1YKR001C RPL1AP0CX43 217 aaKnown RBP5.16□□□□□ -1.58
VPS1YKR001C RPL1BP0CX44 217 aaKnown RBP5.16□□□□□ -1.58
VPS1YKR001C ZRC1P20107 442 aa5.16□□□□□ -1.58
VPS1YKR001C AHC2P25649 128 aa5.16□□□□□ -1.58
VPS1YKR001C RPS5P26783 225 aaKnown RBP5.16□□□□□ -1.58
VPS1YKR001C NTR2P36118 322 aaPredicted RBP5.16□□□□□ -1.58
VPS1YKR001C TAT1P38085 619 aa5.16□□□□□ -1.58
VPS1YKR001C YBR184WP38299 523 aa5.16□□□□□ -1.58
VPS1YKR001C VHC1P38329 1120 aa5.16□□□□□ -1.58
VPS1YKR001C LEU5P38702 357 aa5.16□□□□□ -1.58
VPS1YKR001C COS8P38723 381 aa5.16□□□□□ -1.58
VPS1YKR001C BIG1P38813 335 aa5.16□□□□□ -1.58
VPS1YKR001C BTT1P40314 149 aaPredicted RBP5.16□□□□□ -1.58
VPS1YKR001C KTR7P40504 517 aa5.16□□□□□ -1.58
VPS1YKR001C PFA3P42836 336 aa5.16□□□□□ -1.58
VPS1YKR001C PMT6P42934 759 aa5.16□□□□□ -1.58
VPS1YKR001C HSV2P50079 448 aaPredicted RBP5.16□□□□□ -1.58
VPS1YKR001C RPA49Q01080 415 aaPredicted RBP5.16□□□□□ -1.58
VPS1YKR001C YPL113CQ02961 396 aa5.16□□□□□ -1.58
VPS1YKR001C BSP1Q06604 576 aa5.16□□□□□ -1.58
VPS1YKR001C YPR078CQ06813 372 aa5.16□□□□□ -1.58
VPS1YKR001C COS7Q07788 383 aa5.16□□□□□ -1.58
VPS1YKR001C ELG1Q12050 791 aa5.16□□□□□ -1.58
VPS1YKR001C YRA1Q12159 226 aaKnown RBP5.16□□□□□ -1.58
VPS1YKR001C YOL159C-AQ3E769 90 aa5.16□□□□□ -1.58
VPS1YKR001C VPS63O13549 108 aa5.15□□□□□ -1.58
VPS1YKR001C ASP3-2P0CX77 362 aa5.15□□□□□ -1.58
VPS1YKR001C ASP3-3P0CX78 362 aa5.15□□□□□ -1.58
VPS1YKR001C ASP3-4P0CX79 362 aa5.15□□□□□ -1.58
VPS1YKR001C ASP3-1P0CZ17 362 aa5.15□□□□□ -1.58
VPS1YKR001C NHP6BP11633 99 aaKnown RBP5.15□□□□□ -1.58
VPS1YKR001C MRPL44P19956 98 aa5.15□□□□□ -1.58
VPS1YKR001C SEC59P20048 519 aa5.15□□□□□ -1.58
VPS1YKR001C DGR2P32330 852 aa5.15□□□□□ -1.58
VPS1YKR001C YPT7P32939 208 aa5.15□□□□□ -1.58
VPS1YKR001C YKR051WP36142 418 aa5.15□□□□□ -1.58
VPS1YKR001C DER1P38307 211 aa5.15□□□□□ -1.58
VPS1YKR001C PUG1P40100 303 aa5.15□□□□□ -1.58
VPS1YKR001C YIR035CP40579 254 aa5.15□□□□□ -1.58
VPS1YKR001C SBH2P52871 88 aa5.15□□□□□ -1.58
VPS1YKR001C YGR126WP53274 230 aa5.15□□□□□ -1.58
VPS1YKR001C ATG4P53867 494 aa5.15□□□□□ -1.58
VPS1YKR001C APM1Q00776 475 aaPredicted RBP5.15□□□□□ -1.58
VPS1YKR001C SKO1Q02100 647 aa5.15□□□□□ -1.58
VPS1YKR001C SCS7Q03529 384 aa5.15□□□□□ -1.58
VPS1YKR001C YDR391CQ04170 232 aa5.15□□□□□ -1.58
VPS1YKR001C YDL057WQ07379 328 aa5.15□□□□□ -1.58
VPS1YKR001C SPO75Q07798 868 aa5.15□□□□□ -1.58
VPS1YKR001C RDR1Q08904 546 aa5.15□□□□□ -1.58
VPS1YKR001C GPM2Q12008 311 aa5.15□□□□□ -1.58
VPS1YKR001C UBX3Q12229 455 aa5.15□□□□□ -1.58
VPS1YKR001C YOL114CQ12322 202 aa5.15□□□□□ -1.58
VPS1YKR001C TDH2P00358 332 aaKnown RBP5.15□□□□□ -1.59
VPS1YKR001C TDH3P00359 332 aaKnown RBP RIP-Chip data5.15□□□□□ -1.59not detected
VPS1YKR001C GUK1P15454 187 aaKnown RBP5.15□□□□□ -1.59
VPS1YKR001C SAC7P17121 654 aa5.15□□□□□ -1.59
VPS1YKR001C YCL068CP25593 260 aa5.15□□□□□ -1.59
VPS1YKR001C GSY2P27472 705 aa5.15□□□□□ -1.59
VPS1YKR001C HYM1P32464 399 aa5.15□□□□□ -1.59
VPS1YKR001C MKK2P32491 506 aa5.15□□□□□ -1.59
VPS1YKR001C ETR1P38071 380 aa5.15□□□□□ -1.59
VPS1YKR001C YHR122WP38829 231 aa5.15□□□□□ -1.59
VPS1YKR001C PRK1P40494 810 aa5.15□□□□□ -1.59
VPS1YKR001C TOS3P43637 560 aa5.15□□□□□ -1.59
VPS1YKR001C HIT1P46973 164 aa5.15□□□□□ -1.59
VPS1YKR001C COG7P53195 279 aa5.15□□□□□ -1.59
VPS1YKR001C YGR053CP53234 283 aa5.15□□□□□ -1.59
VPS1YKR001C MOT3P54785 490 aaKnown RBP5.15□□□□□ -1.59
VPS1YKR001C EFR3Q03653 782 aaKnown RBP5.15□□□□□ -1.59
VPS1YKR001C YDR278CQ05612 105 aa5.15□□□□□ -1.59
VPS1YKR001C PEX30Q06169 523 aa5.15□□□□□ -1.59
VPS1YKR001C SSK1Q07084 712 aa5.15□□□□□ -1.59
VPS1YKR001C FMP45Q07651 309 aa5.15□□□□□ -1.59
VPS1YKR001C HRD1Q08109 551 aa5.15□□□□□ -1.59
VPS1YKR001C BSC6Q08280 497 aa5.15□□□□□ -1.59
VPS1YKR001C SCP1Q08873 200 aa5.15□□□□□ -1.59
VPS1YKR001C ATX2Q12067 313 aa5.15□□□□□ -1.59
Retrieved 100 of 5,963 RNA–protein pairs in 7.9 ms