RNA–Protein interactions for RNA: Q0140

VAR1, Transcript of Mitochondrial ribosomal protein of the small subunit, yeast

Gene VAR1, Length 1,197 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
VAR1	Q0140	RPL16A	P26784	199 aa	Known RBP	1.59	□□□□□ -2.15
VAR1	Q0140	GGC1	P38988	300 aa		1.59	□□□□□ -2.15
VAR1	Q0140	SLT2	Q00772	484 aa		1.59	□□□□□ -2.15
VAR1	Q0140	PRP3	Q03338	469 aa	Predicted RBP	1.59	□□□□□ -2.15
VAR1	Q0140	YDL109C	Q12103	647 aa		1.59	□□□□□ -2.15
VAR1	Q0140	SLM5	P25345	492 aa	Known RBP	1.58	□□□□□ -2.16
VAR1	Q0140	YCR051W	P25631	222 aa		1.58	□□□□□ -2.16
VAR1	Q0140	TOA2	P32774	122 aa		1.58	□□□□□ -2.16
VAR1	Q0140	DOA1	P36037	715 aa		1.58	□□□□□ -2.16
VAR1	Q0140	SEC27	P41811	889 aa	Known RBP	1.58	□□□□□ -2.16
VAR1	Q0140	PRM1	P53835	661 aa		1.58	□□□□□ -2.16
VAR1	Q0140	SMD1	Q02260	146 aa	Predicted RBP	1.58	□□□□□ -2.16
VAR1	Q0140	RNH203	Q12338	110 aa		1.58	□□□□□ -2.16
VAR1	Q0140	ARF1	P11076	181 aa	Known RBP	1.57	□□□□□ -2.16
VAR1	Q0140	YMR262W	P38430	313 aa		1.57	□□□□□ -2.16
VAR1	Q0140	GMC1	Q04399	608 aa		1.57	□□□□□ -2.16
VAR1	Q0140	PGA3	Q12746	312 aa	Known RBP	1.57	□□□□□ -2.16
VAR1	Q0140	OPI3	P05375	206 aa		1.56	□□□□□ -2.16
VAR1	Q0140	RPL12A	P0CX53	165 aa	Known RBP	1.56	□□□□□ -2.16
VAR1	Q0140	RPL12B	P0CX54	165 aa		1.56	□□□□□ -2.16
VAR1	Q0140	HPR1	P17629	752 aa	Known RBP	1.56	□□□□□ -2.16
VAR1	Q0140	TIP20	P33891	701 aa		1.56	□□□□□ -2.16
VAR1	Q0140	YBL081W	P38180	368 aa	Known RBP	1.56	□□□□□ -2.16
VAR1	Q0140	NAS6	P50086	228 aa		1.56	□□□□□ -2.16
VAR1	Q0140	YPL113C	Q02961	396 aa		1.56	□□□□□ -2.16
VAR1	Q0140	GAS2	Q06135	555 aa		1.56	□□□□□ -2.16
VAR1	Q0140	CDD1	Q06549	142 aa		1.56	□□□□□ -2.16
VAR1	Q0140	AFI1	Q99222	893 aa		1.56	□□□□□ -2.16
VAR1	Q0140	RPL23A	P0CX41	137 aa	Known RBP	1.55	□□□□□ -2.16
VAR1	Q0140	RPL23B	P0CX42	137 aa	Known RBP	1.55	□□□□□ -2.16
VAR1	Q0140	SLM4	P38247	162 aa		1.55	□□□□□ -2.16
VAR1	Q0140	NOC2	P39744	710 aa	Known RBP	1.55	□□□□□ -2.16
VAR1	Q0140	AIM23	P47015	356 aa		1.55	□□□□□ -2.16
VAR1	Q0140	TAF11	Q04226	346 aa		1.55	□□□□□ -2.16
VAR1	Q0140	NSE1	Q07913	336 aa		1.55	□□□□□ -2.16
VAR1	Q0140	MIR1	P23641	311 aa	Known RBP	1.54	□□□□□ -2.16
VAR1	Q0140	RIM1	P32445	135 aa	Known RBP	1.54	□□□□□ -2.16
VAR1	Q0140	YKR032W	P36127	104 aa		1.54	□□□□□ -2.16
VAR1	Q0140	HSH155	P49955	971 aa	Known RBP	1.54	□□□□□ -2.16
VAR1	Q0140	SHE4	P51534	789 aa		1.54	□□□□□ -2.16
VAR1	Q0140	PMT5	P52867	743 aa		1.54	□□□□□ -2.16
VAR1	Q0140	CLP1	Q08685	445 aa	Predicted RBP	1.54	□□□□□ -2.16
VAR1	Q0140	ZTA1	P38230	334 aa	Known RBP	1.53	□□□□□ -2.16
VAR1	Q0140	ROG1	P53118	685 aa		1.53	□□□□□ -2.16
VAR1	Q0140	YDR341C	Q05506	607 aa	Known RBP	1.53	□□□□□ -2.16
VAR1	Q0140	RLP24	Q07915	199 aa	Known RBP	1.53	□□□□□ -2.16
VAR1	Q0140	PRP46	Q12417	451 aa	Predicted RBP	1.53	□□□□□ -2.16
VAR1	Q0140	PMT2	P31382	759 aa		1.52	□□□□□ -2.17
VAR1	Q0140	URC2	Q04411	772 aa		1.52	□□□□□ -2.17
VAR1	Q0140	VPS54	Q12071	889 aa		1.52	□□□□□ -2.17
VAR1	Q0140	RRI2	Q12348	645 aa		1.52	□□□□□ -2.17
VAR1	Q0140	SER3	P40054	469 aa		1.51	□□□□□ -2.17
VAR1	Q0140	GPD2	P41911	440 aa	Known RBP	1.51	□□□□□ -2.17
VAR1	Q0140	MNN5	P46982	586 aa		1.51	□□□□□ -2.17
VAR1	Q0140	ERO1	Q03103	563 aa		1.51	□□□□□ -2.17
VAR1	Q0140	AEP3	Q12089	606 aa		1.51	□□□□□ -2.17
VAR1	Q0140	MET2	P08465	486 aa		1.5	□□□□□ -2.17
VAR1	Q0140	BGL2	P15703	313 aa	Known RBP	1.5	□□□□□ -2.17
VAR1	Q0140	QDR3	P38227	689 aa		1.5	□□□□□ -2.17
VAR1	Q0140	SMC2	P38989	1170 aa	Known RBP	1.5	□□□□□ -2.17
VAR1	Q0140	BNI5	P53890	448 aa	Known RBP	1.5	□□□□□ -2.17
VAR1	Q0140	UTP15	Q04305	513 aa	Known RBP	1.5	□□□□□ -2.17
VAR1	Q0140	GTO3	Q04806	366 aa		1.5	□□□□□ -2.17
VAR1	Q0140	PLB3	Q08108	686 aa		1.5	□□□□□ -2.17
VAR1	Q0140	MMT2	Q08970	484 aa		1.5	□□□□□ -2.17
VAR1	Q0140	SFI1	Q12369	946 aa		1.5	□□□□□ -2.17
VAR1	Q0140	NRP1	P32770	719 aa	Known RBP RIP-Chip data	1.49	□□□□□ -2.17	not detected
VAR1	Q0140	BYE1	P36106	594 aa		1.49	□□□□□ -2.17
VAR1	Q0140	BUD13	P46947	266 aa	Predicted RBP	1.49	□□□□□ -2.17
VAR1	Q0140	ASG7	P46993	209 aa		1.49	□□□□□ -2.17
VAR1	Q0140	GAT3	Q07928	141 aa		1.49	□□□□□ -2.17
VAR1	Q0140	YPR063C	Q12160	140 aa		1.49	□□□□□ -2.17
VAR1	Q0140	BAT2	P47176	376 aa	Known RBP	1.48	□□□□□ -2.17
VAR1	Q0140	YPL080C	Q02826	108 aa		1.48	□□□□□ -2.17
VAR1	Q0140	YDR018C	Q12185	396 aa		1.48	□□□□□ -2.17
VAR1	Q0140	TDH2	P00358	332 aa	Known RBP	1.47	□□□□□ -2.17
VAR1	Q0140	TDH3	P00359	332 aa	Known RBP RIP-Chip data	1.47	□□□□□ -2.17	not detected
VAR1	Q0140	DAL81	P21657	970 aa		1.47	□□□□□ -2.17
VAR1	Q0140	URA7	P28274	579 aa	Known RBP	1.47	□□□□□ -2.17
VAR1	Q0140	EFM3	P47163	339 aa		1.47	□□□□□ -2.17
VAR1	Q0140	RPS14A	P06367	137 aa	Known RBP	1.46	□□□□□ -2.18
VAR1	Q0140	RNA1	P11745	407 aa	Known RBP	1.46	□□□□□ -2.18
VAR1	Q0140	ERV1	P27882	189 aa		1.46	□□□□□ -2.18
VAR1	Q0140	SSE1	P32589	693 aa	Known RBP	1.46	□□□□□ -2.18
VAR1	Q0140	EFM1	P38732	585 aa		1.46	□□□□□ -2.18
VAR1	Q0140	RPS14B	P39516	138 aa	Known RBP	1.46	□□□□□ -2.18
VAR1	Q0140	PAC11	P40960	533 aa		1.46	□□□□□ -2.18
VAR1	Q0140	ARR1	Q06596	294 aa		1.46	□□□□□ -2.18
VAR1	Q0140	PHO91	P27514	894 aa		1.45	□□□□□ -2.18
VAR1	Q0140	YSC83	P32792	385 aa		1.45	□□□□□ -2.18
VAR1	Q0140	NFU1	P32860	256 aa		1.45	□□□□□ -2.18
VAR1	Q0140	YKR015C	P36111	568 aa		1.45	□□□□□ -2.18
VAR1	Q0140	YDR114C	Q04597	100 aa		1.45	□□□□□ -2.18
VAR1	Q0140	YDR222W	Q04925	415 aa		1.45	□□□□□ -2.18
VAR1	Q0140	YLR456W	Q06199	204 aa		1.45	□□□□□ -2.18
VAR1	Q0140	KRE1	P17260	313 aa		1.44	□□□□□ -2.18
VAR1	Q0140	TAE1	P38340	232 aa		1.44	□□□□□ -2.18
VAR1	Q0140	MED6	P38782	295 aa		1.44	□□□□□ -2.18
VAR1	Q0140	PCL7	P40186	285 aa		1.44	□□□□□ -2.18
VAR1	Q0140	SCS7	Q03529	384 aa		1.44	□□□□□ -2.18

Retrieved 100 of 5,963 RNA–protein pairs in 54.7 ms