RNA–Protein interactions for RNA: YOR054C

VHS3, Transcript of Negative regulatory subunit of protein phosphatase 1 Ppz1p, yeast

Gene VHS3, Length 2,025 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
VHS3	YOR054C	RPL10	P41805	221 aa	Known RBP	3.9	□□□□□ -1.79
VHS3	YOR054C	GLR1	P41921	483 aa	Known RBP	3.9	□□□□□ -1.79
VHS3	YOR054C	MRX5	P47007	382 aa		3.9	□□□□□ -1.79
VHS3	YOR054C	MPS3	P47069	682 aa		3.9	□□□□□ -1.79
VHS3	YOR054C	MNN10	P50108	393 aa	Known RBP	3.9	□□□□□ -1.79
VHS3	YOR054C	YGR053C	P53234	283 aa		3.9	□□□□□ -1.79
VHS3	YOR054C	LSM3	P57743	89 aa	Known RBP	3.9	□□□□□ -1.79
VHS3	YOR054C	ODC1	Q03028	310 aa		3.9	□□□□□ -1.79
VHS3	YOR054C	RLI1	Q03195	608 aa	Known RBP	3.9	□□□□□ -1.79
VHS3	YOR054C	YDR131C	Q03899	556 aa		3.9	□□□□□ -1.79
VHS3	YOR054C	SEN15	Q04675	128 aa		3.9	□□□□□ -1.79
VHS3	YOR054C	YMR034C	Q05131	434 aa	Predicted RBP	3.9	□□□□□ -1.79
VHS3	YOR054C	DIN7	Q12086	430 aa		3.9	□□□□□ -1.79
VHS3	YOR054C	REC8	Q12188	680 aa		3.9	□□□□□ -1.79
VHS3	YOR054C	AGC1	Q12482	902 aa		3.9	□□□□□ -1.79
VHS3	YOR054C	TMA7	Q3E764	64 aa	Known RBP	3.9	□□□□□ -1.79
VHS3	YOR054C	VMA9	Q3E7B6	73 aa		3.9	□□□□□ -1.79
VHS3	YOR054C	SRN2	Q99176	213 aa		3.9	□□□□□ -1.79
VHS3	YOR054C	MPD2	Q99316	277 aa		3.9	□□□□□ -1.79
VHS3	YOR054C	SSA3	P09435	649 aa	Known RBP	3.89	□□□□□ -1.79
VHS3	YOR054C	REV1	P12689	985 aa		3.89	□□□□□ -1.79
VHS3	YOR054C	MDH1	P17505	334 aa	Known RBP RIP-Chip data	3.89	□□□□□ -1.79	not detected
VHS3	YOR054C	GRR1	P24814	1151 aa		3.89	□□□□□ -1.79
VHS3	YOR054C	YCL002C	P25565	263 aa		3.89	□□□□□ -1.79
VHS3	YOR054C	DAL80	P26343	269 aa		3.89	□□□□□ -1.79
VHS3	YOR054C	FAA1	P30624	700 aa	Known RBP	3.89	□□□□□ -1.79
VHS3	YOR054C	RIM1	P32445	135 aa	Known RBP	3.89	□□□□□ -1.79
VHS3	YOR054C	BEM3	P32873	1128 aa		3.89	□□□□□ -1.79
VHS3	YOR054C	TAT1	P38085	619 aa		3.89	□□□□□ -1.79
VHS3	YOR054C	FAA3	P39002	694 aa		3.89	□□□□□ -1.79
VHS3	YOR054C	IDP2	P41939	412 aa		3.89	□□□□□ -1.79
VHS3	YOR054C	CAK1	P43568	368 aa	Predicted RBP	3.89	□□□□□ -1.79
VHS3	YOR054C	NBP35	P52920	328 aa		3.89	□□□□□ -1.79
VHS3	YOR054C	PKP2	P53170	491 aa		3.89	□□□□□ -1.79
VHS3	YOR054C	YNL181W	P53878	407 aa		3.89	□□□□□ -1.79
VHS3	YOR054C	IDP3	P53982	420 aa	Known RBP	3.89	□□□□□ -1.79
VHS3	YOR054C	RRN5	Q02983	363 aa		3.89	□□□□□ -1.79
VHS3	YOR054C	YMD8	Q03697	442 aa		3.89	□□□□□ -1.79
VHS3	YOR054C	DUS4	Q06063	367 aa		3.89	□□□□□ -1.79
VHS3	YOR054C	YDL199C	Q12407	687 aa		3.89	□□□□□ -1.79
VHS3	YOR054C	YGR161W-C	Q3E744	92 aa		3.89	□□□□□ -1.79
VHS3	YOR054C	MHF2	Q3E829	80 aa		3.89	□□□□□ -1.79
VHS3	YOR054C	PMA1	P05030	918 aa	Known RBP	3.88	□□□□□ -1.79
VHS3	YOR054C	ARG80	P07249	177 aa		3.88	□□□□□ -1.79
VHS3	YOR054C	TRP4	P07285	380 aa	Predicted RBP	3.88	□□□□□ -1.79
VHS3	YOR054C	FUM1	P08417	488 aa	Known RBP	3.88	□□□□□ -1.79
VHS3	YOR054C	YER152C	P10356	443 aa		3.88	□□□□□ -1.79
VHS3	YOR054C	YPK2	P18961	677 aa		3.88	□□□□□ -1.79
VHS3	YOR054C	PRP2	P20095	876 aa	Predicted RBP	3.88	□□□□□ -1.79
VHS3	YOR054C	UTR1	P21373	530 aa		3.88	□□□□□ -1.79
VHS3	YOR054C	YCK2	P23292	546 aa	Known RBP	3.88	□□□□□ -1.79
VHS3	YOR054C	MIR1	P23641	311 aa	Known RBP	3.88	□□□□□ -1.79
VHS3	YOR054C	RSA4	P25382	515 aa	Known RBP	3.88	□□□□□ -1.79
VHS3	YOR054C	POF1	P25576	258 aa		3.88	□□□□□ -1.79
VHS3	YOR054C	BUB3	P26449	341 aa		3.88	□□□□□ -1.79
VHS3	YOR054C	IDH1	P28834	360 aa	Known RBP RIP-Chip data	3.88	□□□□□ -1.79	not detected
VHS3	YOR054C	MRPL9	P31334	269 aa		3.88	□□□□□ -1.79
VHS3	YOR054C	CAT2	P32796	670 aa	Known RBP	3.88	□□□□□ -1.79
VHS3	YOR054C	MRPL15	P36523	253 aa		3.88	□□□□□ -1.79
VHS3	YOR054C	POL12	P38121	705 aa	Predicted RBP	3.88	□□□□□ -1.79
VHS3	YOR054C	YBR013C	P38215	129 aa		3.88	□□□□□ -1.79
VHS3	YOR054C	VPS45	P38932	577 aa		3.88	□□□□□ -1.79
VHS3	YOR054C	LAS21	P40367	830 aa		3.88	□□□□□ -1.79
VHS3	YOR054C	PAN6	P40459	309 aa		3.88	□□□□□ -1.79
VHS3	YOR054C	ATG18	P43601	500 aa		3.88	□□□□□ -1.79
VHS3	YOR054C	PMT4	P46971	762 aa		3.88	□□□□□ -1.79
VHS3	YOR054C	FAA4	P47912	694 aa	Known RBP	3.88	□□□□□ -1.79
VHS3	YOR054C	GTO1	P48239	356 aa		3.88	□□□□□ -1.79
VHS3	YOR054C	STR3	P53101	465 aa	Known RBP	3.88	□□□□□ -1.79
VHS3	YOR054C	YGL159W	P53110	370 aa		3.88	□□□□□ -1.79
VHS3	YOR054C	MPC1	P53157	130 aa	Known RBP	3.88	□□□□□ -1.79
VHS3	YOR054C	PUS2	P53167	370 aa		3.88	□□□□□ -1.79
VHS3	YOR054C	GIM3	P53900	129 aa		3.88	□□□□□ -1.79
VHS3	YOR054C	PRP38	Q00723	242 aa	Predicted RBP	3.88	□□□□□ -1.79
VHS3	YOR054C	CWC27	Q02770	301 aa		3.88	□□□□□ -1.79
VHS3	YOR054C	SNO1	Q03144	224 aa		3.88	□□□□□ -1.79
VHS3	YOR054C	MRPS17	Q03246	237 aa	Predicted RBP	3.88	□□□□□ -1.79
VHS3	YOR054C	GAS3	Q03655	524 aa		3.88	□□□□□ -1.79
VHS3	YOR054C	LRS4	Q04087	347 aa	Known RBP	3.88	□□□□□ -1.79
VHS3	YOR054C	HOF1	Q05080	669 aa		3.88	□□□□□ -1.79
VHS3	YOR054C	CDC123	Q05791	360 aa		3.88	□□□□□ -1.79
VHS3	YOR054C	YLR173W	Q06247	608 aa		3.88	□□□□□ -1.79
VHS3	YOR054C	PML1	Q07930	204 aa	Predicted RBP	3.88	□□□□□ -1.79
VHS3	YOR054C	YOL131W	Q08270	108 aa		3.88	□□□□□ -1.79
VHS3	YOR054C	YLL056C	Q12177	298 aa		3.88	□□□□□ -1.79
VHS3	YOR054C	YPL066W	Q12194	479 aa		3.88	□□□□□ -1.79
VHS3	YOR054C	WTM2	Q12206	467 aa		3.88	□□□□□ -1.79
VHS3	YOR054C	YLR046C	Q12253	270 aa		3.88	□□□□□ -1.79
VHS3	YOR054C	ERG27	Q12452	347 aa	Known RBP	3.88	□□□□□ -1.79
VHS3	YOR054C	YPR014C	Q6B0W2	109 aa		3.88	□□□□□ -1.79
VHS3	YOR054C	Q0142	Q9ZZW4	58 aa		3.88	□□□□□ -1.79
VHS3	YOR054C	GAL80	P04387	435 aa		3.88	□□□□□ -1.79
VHS3	YOR054C	RPL8A	P17076	256 aa	Known RBP	3.88	□□□□□ -1.79
VHS3	YOR054C	VMA3	P25515	160 aa		3.88	□□□□□ -1.79
VHS3	YOR054C	EMC1	P25574	760 aa		3.88	□□□□□ -1.79
VHS3	YOR054C	GAC1	P28006	793 aa		3.88	□□□□□ -1.79
VHS3	YOR054C	DAL3	P32459	195 aa		3.88	□□□□□ -1.79
VHS3	YOR054C	CDC5	P32562	705 aa		3.88	□□□□□ -1.79
VHS3	YOR054C	SUR1	P33300	382 aa		3.88	□□□□□ -1.79
VHS3	YOR054C	YKL162C	P36052	402 aa		3.88	□□□□□ -1.79

Retrieved 100 of 5,963 RNA–protein pairs in 15.5 ms