RNA–Protein interactions for RNA: YKL124W

SSH4, Transcript of Specificity factor required for Rsp5p-dependent ubiquitination, yeast

Gene SSH4, Length 1,740 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
SSH4	YKL124W	BZZ1	P38822	633 aa		4.17	□□□□□ -1.74
SSH4	YKL124W	SER3	P40054	469 aa		4.17	□□□□□ -1.74
SSH4	YKL124W	SCS2	P40075	244 aa	Known RBP	4.17	□□□□□ -1.74
SSH4	YKL124W	PAC11	P40960	533 aa		4.17	□□□□□ -1.74
SSH4	YKL124W	MSS2	P40990	351 aa		4.17	□□□□□ -1.74
SSH4	YKL124W	VMA13	P41807	478 aa	Known RBP	4.17	□□□□□ -1.74
SSH4	YKL124W	MPS3	P47069	682 aa		4.17	□□□□□ -1.74
SSH4	YKL124W	IDP3	P53982	420 aa	Known RBP	4.17	□□□□□ -1.74
SSH4	YKL124W	YMR210W	Q03649	449 aa		4.17	□□□□□ -1.74
SSH4	YKL124W	AKR2	Q12013	749 aa		4.17	□□□□□ -1.74
SSH4	YKL124W	TMS1	Q12116	473 aa		4.17	□□□□□ -1.74
SSH4	YKL124W	PFK27	Q12471	397 aa	Predicted RBP	4.17	□□□□□ -1.74
SSH4	YKL124W	CMC2	Q3E7A4	109 aa		4.17	□□□□□ -1.74
SSH4	YKL124W	IPP1	P00817	287 aa	Known RBP	4.16	□□□□□ -1.74
SSH4	YKL124W	CDC36	P06100	191 aa	Predicted RBP	4.16	□□□□□ -1.74
SSH4	YKL124W	ARD1	P07347	238 aa	Predicted RBP	4.16	□□□□□ -1.74
SSH4	YKL124W	ARO3	P14843	370 aa	Known RBP	4.16	□□□□□ -1.74
SSH4	YKL124W	DAP2	P18962	818 aa		4.16	□□□□□ -1.74
SSH4	YKL124W	VPS33	P20795	691 aa		4.16	□□□□□ -1.74
SSH4	YKL124W	MXR2	P25566	168 aa		4.16	□□□□□ -1.74
SSH4	YKL124W	DCG1	P32460	244 aa		4.16	□□□□□ -1.74
SSH4	YKL124W	NGG1	P32494	702 aa		4.16	□□□□□ -1.74
SSH4	YKL124W	CAF4	P36130	643 aa		4.16	□□□□□ -1.74
SSH4	YKL124W	IFA38	P38286	347 aa		4.16	□□□□□ -1.74
SSH4	YKL124W	SEC31	P38968	1273 aa	Known RBP	4.16	□□□□□ -1.74
SSH4	YKL124W	MBP1	P39678	833 aa		4.16	□□□□□ -1.74
SSH4	YKL124W	SEC24	P40482	926 aa	Known RBP	4.16	□□□□□ -1.74
SSH4	YKL124W	ICE2	P40499	491 aa		4.16	□□□□□ -1.74
SSH4	YKL124W	YIL001W	P40560	513 aa		4.16	□□□□□ -1.74
SSH4	YKL124W	RPL10	P41805	221 aa	Known RBP	4.16	□□□□□ -1.74
SSH4	YKL124W	UBP6	P43593	499 aa	Known RBP	4.16	□□□□□ -1.74
SSH4	YKL124W	YDL183C	P48569	320 aa		4.16	□□□□□ -1.74
SSH4	YKL124W	MON1	P53129	644 aa		4.16	□□□□□ -1.74
SSH4	YKL124W	SAM50	P53969	484 aa		4.16	□□□□□ -1.74
SSH4	YKL124W	YET2	Q04210	160 aa		4.16	□□□□□ -1.74
SSH4	YKL124W	APC4	Q04601	652 aa		4.16	□□□□□ -1.74
SSH4	YKL124W	YDR124W	Q04608	324 aa		4.16	□□□□□ -1.74
SSH4	YKL124W	YLR413W	Q06689	675 aa		4.16	□□□□□ -1.74
SSH4	YKL124W	CDA2	Q06703	312 aa		4.16	□□□□□ -1.74
SSH4	YKL124W	UAF30	Q08747	228 aa		4.16	□□□□□ -1.74
SSH4	YKL124W	RAX1	Q08760	435 aa		4.16	□□□□□ -1.74
SSH4	YKL124W	ISN1	Q99312	450 aa		4.16	□□□□□ -1.74
SSH4	YKL124W	FAS1	P07149	2051 aa	Known RBP	4.16	□□□□□ -1.74
SSH4	YKL124W	LEU4	P06208	619 aa	Known RBP	4.15	□□□□□ -1.74
SSH4	YKL124W	CBS2	P14905	389 aa		4.15	□□□□□ -1.74
SSH4	YKL124W	APA2	P22108	325 aa		4.15	□□□□□ -1.74
SSH4	YKL124W	LOS1	P33418	1100 aa	Predicted RBP	4.15	□□□□□ -1.74
SSH4	YKL124W	GLY1	P37303	387 aa	Known RBP	4.15	□□□□□ -1.74
SSH4	YKL124W	RTC3	P38804	111 aa	Predicted RBP	4.15	□□□□□ -1.74
SSH4	YKL124W	PSD1	P39006	500 aa		4.15	□□□□□ -1.74
SSH4	YKL124W	VPS52	P39904	641 aa		4.15	□□□□□ -1.74
SSH4	YKL124W	CUP9	P41817	306 aa		4.15	□□□□□ -1.74
SSH4	YKL124W	MEP2	P41948	499 aa		4.15	□□□□□ -1.74
SSH4	YKL124W	UBX6	P47049	396 aa		4.15	□□□□□ -1.74
SSH4	YKL124W	MTR3	P48240	250 aa	Predicted RBP	4.15	□□□□□ -1.74
SSH4	YKL124W	BIO3	P50277	480 aa		4.15	□□□□□ -1.74
SSH4	YKL124W	TAF6	P53040	516 aa		4.15	□□□□□ -1.74
SSH4	YKL124W	RMR1	P53060	241 aa		4.15	□□□□□ -1.74
SSH4	YKL124W	RSN1	Q03516	953 aa		4.15	□□□□□ -1.74
SSH4	YKL124W	SWF1	Q04629	336 aa		4.15	□□□□□ -1.74
SSH4	YKL124W	OMS1	Q06668	471 aa		4.15	□□□□□ -1.74
SSH4	YKL124W	VIK1	Q12045	647 aa		4.15	□□□□□ -1.74
SSH4	YKL124W	YPR096C	O13587	100 aa		4.15	□□□□□ -1.75
SSH4	YKL124W	GCN4	P03069	281 aa		4.15	□□□□□ -1.75
SSH4	YKL124W	MET3	P08536	511 aa		4.15	□□□□□ -1.75
SSH4	YKL124W	STE6	P12866	1290 aa		4.15	□□□□□ -1.75
SSH4	YKL124W	YCR102C	P25608	368 aa		4.15	□□□□□ -1.75
SSH4	YKL124W	CPR3	P25719	182 aa		4.15	□□□□□ -1.75
SSH4	YKL124W	AAR2	P32357	355 aa	Predicted RBP	4.15	□□□□□ -1.75
SSH4	YKL124W	YKR015C	P36111	568 aa		4.15	□□□□□ -1.75
SSH4	YKL124W	DAD2	P36162	133 aa		4.15	□□□□□ -1.75
SSH4	YKL124W	MNN2	P38069	597 aa		4.15	□□□□□ -1.75
SSH4	YKL124W	ARN1	P38731	627 aa		4.15	□□□□□ -1.75
SSH4	YKL124W	TRA1	P38811	3744 aa		4.15	□□□□□ -1.75
SSH4	YKL124W	ATG7	P38862	630 aa		4.15	□□□□□ -1.75
SSH4	YKL124W	SAP1	P39955	897 aa	Known RBP	4.15	□□□□□ -1.75
SSH4	YKL124W	PUG1	P40100	303 aa		4.15	□□□□□ -1.75
SSH4	YKL124W	IAH1	P41734	238 aa		4.15	□□□□□ -1.75
SSH4	YKL124W	GTO1	P48239	356 aa		4.15	□□□□□ -1.75
SSH4	YKL124W	TAF4	P50105	388 aa		4.15	□□□□□ -1.75
SSH4	YKL124W	CUS2	P53830	285 aa	Predicted RBP	4.15	□□□□□ -1.75
SSH4	YKL124W	GOR1	P53839	350 aa		4.15	□□□□□ -1.75
SSH4	YKL124W	MRPL13	Q02204	264 aa		4.15	□□□□□ -1.75
SSH4	YKL124W	MET31	Q03081	177 aa		4.15	□□□□□ -1.75
SSH4	YKL124W	ARP10	Q04549	284 aa		4.15	□□□□□ -1.75
SSH4	YKL124W	SNO4	Q04902	237 aa		4.15	□□□□□ -1.75
SSH4	YKL124W	ISR1	Q06098	443 aa	Known RBP	4.15	□□□□□ -1.75
SSH4	YKL124W	SFH1	Q06168	426 aa		4.15	□□□□□ -1.75
SSH4	YKL124W	YPS7	Q06325	596 aa		4.15	□□□□□ -1.75
SSH4	YKL124W	NGL1	Q08213	363 aa	Known RBP	4.15	□□□□□ -1.75
SSH4	YKL124W	HSP33	Q08914	237 aa	Known RBP	4.15	□□□□□ -1.75
SSH4	YKL124W	YPL272C	Q08984	517 aa		4.15	□□□□□ -1.75
SSH4	YKL124W	HSP32	Q08992	237 aa		4.15	□□□□□ -1.75
SSH4	YKL124W	YOR223W	Q12015	292 aa		4.15	□□□□□ -1.75
SSH4	YKL124W	TPO4	Q12256	659 aa		4.15	□□□□□ -1.75
SSH4	YKL124W	NTO1	Q12311	748 aa		4.15	□□□□□ -1.75
SSH4	YKL124W	PNS1	Q12412	539 aa		4.15	□□□□□ -1.75
SSH4	YKL124W	YKL068W-A	Q3E826	78 aa		4.15	□□□□□ -1.75
SSH4	YKL124W	TRP3	P00937	484 aa		4.14	□□□□□ -1.75
SSH4	YKL124W	RPL7A	P05737	244 aa	Known RBP	4.14	□□□□□ -1.75

Retrieved 100 of 5,963 RNA–protein pairs in 62.7 ms