RNA–Protein interactions for RNA: YKR036C

CAF4, Transcript of WD40 repeat-containing protein associated with the CCR4-NOT complex, yeast

Gene CAF4, Length 1,932 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
CAF4	YKR036C	YJR154W	P47181	346 aa		4.64	□□□□□ -1.67
CAF4	YKR036C	RPL4B	P49626	362 aa	Known RBP	4.64	□□□□□ -1.67
CAF4	YKR036C	NQM1	P53228	333 aa	Predicted RBP	4.64	□□□□□ -1.67
CAF4	YKR036C	YMD8	Q03697	442 aa		4.64	□□□□□ -1.67
CAF4	YKR036C	YDR387C	Q04162	555 aa		4.64	□□□□□ -1.67
CAF4	YKR036C	YDR109C	Q04585	715 aa		4.64	□□□□□ -1.67
CAF4	YKR036C	ATG38	Q05789	226 aa	Known RBP	4.64	□□□□□ -1.67
CAF4	YKR036C	MDM30	Q05930	598 aa		4.64	□□□□□ -1.67
CAF4	YKR036C	YPR091C	Q06833	770 aa		4.64	□□□□□ -1.67
CAF4	YKR036C	SYT1	Q06836	1226 aa		4.64	□□□□□ -1.67
CAF4	YKR036C	PUS9	Q12069	462 aa		4.64	□□□□□ -1.67
CAF4	YKR036C	ARP7	Q12406	477 aa		4.64	□□□□□ -1.67
CAF4	YKR036C	CTF3	Q12748	733 aa		4.64	□□□□□ -1.67
CAF4	YKR036C	CCH1	P50077	2039 aa		4.63	□□□□□ -1.67
CAF4	YKR036C	RPS9A	O13516	197 aa	Known RBP	4.63	□□□□□ -1.67
CAF4	YKR036C	GAL80	P04387	435 aa		4.63	□□□□□ -1.67
CAF4	YKR036C	RPS18A	P0CX55	146 aa	Known RBP	4.63	□□□□□ -1.67
CAF4	YKR036C	RPS18B	P0CX56	146 aa	Predicted RBP	4.63	□□□□□ -1.67
CAF4	YKR036C	COX11	P19516	300 aa	Known RBP	4.63	□□□□□ -1.67
CAF4	YKR036C	SGF29	P25554	259 aa		4.63	□□□□□ -1.67
CAF4	YKR036C	YCR102C	P25608	368 aa		4.63	□□□□□ -1.67
CAF4	YKR036C	YCR090C	P25654	182 aa	Known RBP	4.63	□□□□□ -1.67
CAF4	YKR036C	ACB1	P31787	87 aa		4.63	□□□□□ -1.67
CAF4	YKR036C	PDC2	P32896	925 aa		4.63	□□□□□ -1.67
CAF4	YKR036C	PMT1	P33775	817 aa		4.63	□□□□□ -1.67
CAF4	YKR036C	DHR2	P36009	735 aa	Predicted RBP	4.63	□□□□□ -1.67
CAF4	YKR036C	ABZ1	P37254	787 aa	Predicted RBP	4.63	□□□□□ -1.67
CAF4	YKR036C	ALG14	P38242	237 aa		4.63	□□□□□ -1.67
CAF4	YKR036C	PZF1	P39933	429 aa		4.63	□□□□□ -1.67
CAF4	YKR036C	PTC2	P39966	464 aa	Known RBP	4.63	□□□□□ -1.67
CAF4	YKR036C	NPP2	P39997	493 aa		4.63	□□□□□ -1.67
CAF4	YKR036C	ISC1	P40015	477 aa	Known RBP	4.63	□□□□□ -1.67
CAF4	YKR036C	PRE6	P40303	254 aa	Known RBP	4.63	□□□□□ -1.67
CAF4	YKR036C	SEC28	P40509	296 aa	Known RBP	4.63	□□□□□ -1.67
CAF4	YKR036C	ARF3	P40994	183 aa	RIP-Chip data	4.63	□□□□□ -1.67	not detected
CAF4	YKR036C	PSA1	P41940	361 aa	Known RBP	4.63	□□□□□ -1.67
CAF4	YKR036C	NSE4	P43124	402 aa		4.63	□□□□□ -1.67
CAF4	YKR036C	IDS2	P46958	469 aa		4.63	□□□□□ -1.67
CAF4	YKR036C	UPF3	P48412	387 aa	Known RBP	4.63	□□□□□ -1.67
CAF4	YKR036C	ASN1	P49089	572 aa	Known RBP	4.63	□□□□□ -1.67
CAF4	YKR036C	SEH1	P53011	349 aa	Known RBP	4.63	□□□□□ -1.67
CAF4	YKR036C	RSM27	P53305	110 aa		4.63	□□□□□ -1.67
CAF4	YKR036C	ODC1	Q03028	310 aa		4.63	□□□□□ -1.67
CAF4	YKR036C	CYK3	Q07533	885 aa		4.63	□□□□□ -1.67
CAF4	YKR036C	YPD1	Q07688	167 aa		4.63	□□□□□ -1.67
CAF4	YKR036C	RCL1	Q08096	367 aa	Predicted RBP	4.63	□□□□□ -1.67
CAF4	YKR036C	RRT8	Q08219	342 aa		4.63	□□□□□ -1.67
CAF4	YKR036C	ZEO1	Q08245	113 aa		4.63	□□□□□ -1.67
CAF4	YKR036C	RRP40	Q08285	240 aa	Known RBP	4.63	□□□□□ -1.67
CAF4	YKR036C	SCP1	Q08873	200 aa		4.63	□□□□□ -1.67
CAF4	YKR036C	NMD4	Q12129	218 aa		4.63	□□□□□ -1.67
CAF4	YKR036C	GLO4	Q12320	285 aa		4.63	□□□□□ -1.67
CAF4	YKR036C	JLP1	Q12358	412 aa		4.63	□□□□□ -1.67
CAF4	YKR036C	SUS1	Q6WNK7	96 aa		4.63	□□□□□ -1.67
CAF4	YKR036C	CAN1	P04817	590 aa		4.62	□□□□□ -1.67
CAF4	YKR036C	FUM1	P08417	488 aa	Known RBP	4.62	□□□□□ -1.67
CAF4	YKR036C	UTR1	P21373	530 aa		4.62	□□□□□ -1.67
CAF4	YKR036C	APN1	P22936	367 aa		4.62	□□□□□ -1.67
CAF4	YKR036C	NAM9	P27929	486 aa		4.62	□□□□□ -1.67
CAF4	YKR036C	EMP24	P32803	203 aa	Known RBP	4.62	□□□□□ -1.67
CAF4	YKR036C	LHP1	P33399	275 aa	Known RBP	4.62	□□□□□ -1.67
CAF4	YKR036C	SRP102	P36057	244 aa	Predicted RBP	4.62	□□□□□ -1.67
CAF4	YKR036C	AVT5	P38176	459 aa		4.62	□□□□□ -1.67
CAF4	YKR036C	YHR033W	P38690	423 aa		4.62	□□□□□ -1.67
CAF4	YKR036C	COS8	P38723	381 aa		4.62	□□□□□ -1.67
CAF4	YKR036C	NEM1	P38757	446 aa		4.62	□□□□□ -1.67
CAF4	YKR036C	YHR054C	P38780	354 aa		4.62	□□□□□ -1.67
CAF4	YKR036C	IKI1	P38874	309 aa		4.62	□□□□□ -1.67
CAF4	YKR036C	LSM4	P40070	187 aa	Known RBP	4.62	□□□□□ -1.67
CAF4	YKR036C	YMR144W	P40214	342 aa	Known RBP	4.62	□□□□□ -1.67
CAF4	YKR036C	PGD1	P40356	397 aa		4.62	□□□□□ -1.67
CAF4	YKR036C	GLR1	P41921	483 aa	Known RBP	4.62	□□□□□ -1.67
CAF4	YKR036C	RET2	P43621	546 aa		4.62	□□□□□ -1.67
CAF4	YKR036C	YAE1	P47118	141 aa	Predicted RBP	4.62	□□□□□ -1.67
CAF4	YKR036C	SNN1	P48232	102 aa		4.62	□□□□□ -1.67
CAF4	YKR036C	GTR2	P53290	341 aa		4.62	□□□□□ -1.67
CAF4	YKR036C	ERV29	P53337	310 aa		4.62	□□□□□ -1.67
CAF4	YKR036C	SLG1	P54867	378 aa		4.62	□□□□□ -1.67
CAF4	YKR036C	NHX1	Q04121	633 aa		4.62	□□□□□ -1.67
CAF4	YKR036C	PAL1	Q05518	499 aa	Known RBP	4.62	□□□□□ -1.67
CAF4	YKR036C	CRN1	Q06440	651 aa		4.62	□□□□□ -1.67
CAF4	YKR036C	AIM39	Q08223	395 aa		4.62	□□□□□ -1.67
CAF4	YKR036C	GUP2	Q08929	609 aa		4.62	□□□□□ -1.67
CAF4	YKR036C	LEA1	Q08963	238 aa	Predicted RBP	4.62	□□□□□ -1.67
CAF4	YKR036C	DIN7	Q12086	430 aa		4.62	□□□□□ -1.67
CAF4	YKR036C	RKM5	Q12367	367 aa		4.62	□□□□□ -1.67
CAF4	YKR036C	YDL199C	Q12407	687 aa		4.62	□□□□□ -1.67
CAF4	YKR036C	IZH4	Q99393	312 aa		4.62	□□□□□ -1.67
CAF4	YKR036C	MIS1	P09440	975 aa	Known RBP	4.62	□□□□□ -1.67
CAF4	YKR036C	ASP3-2	P0CX77	362 aa		4.62	□□□□□ -1.67
CAF4	YKR036C	ASP3-3	P0CX78	362 aa		4.62	□□□□□ -1.67
CAF4	YKR036C	ASP3-4	P0CX79	362 aa		4.62	□□□□□ -1.67
CAF4	YKR036C	ASP3-1	P0CZ17	362 aa		4.62	□□□□□ -1.67
CAF4	YKR036C	FUR1	P18562	216 aa	Known RBP	4.62	□□□□□ -1.67
CAF4	YKR036C	MRPL44	P19956	98 aa		4.62	□□□□□ -1.67
CAF4	YKR036C	GRR1	P24814	1151 aa		4.62	□□□□□ -1.67
CAF4	YKR036C	CAT2	P32796	670 aa	Known RBP	4.62	□□□□□ -1.67
CAF4	YKR036C	ORC2	P32833	620 aa		4.62	□□□□□ -1.67
CAF4	YKR036C	LIP5	P32875	414 aa		4.62	□□□□□ -1.67
CAF4	YKR036C	KAE1	P36132	386 aa		4.62	□□□□□ -1.67

Retrieved 100 of 5,963 RNA–protein pairs in 18.7 ms