RNA–Protein interactions for RNA: ENST00000568605.5

CLK3-224, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 1,047 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-224ENST00000568605 ZNF302Q9NR11 478 aa14.68□□□□□ -0.06
CLK3-224ENST00000568605 TRPC6Q9Y210 931 aa14.68□□□□□ -0.06
CLK3-224ENST00000568605 TBX3O15119 743 aa14.67□□□□□ -0.06
CLK3-224ENST00000568605 DHX15O43143 795 aaKnown RBP14.67□□□□□ -0.06
CLK3-224ENST00000568605 ATG7O95352 703 aa14.67□□□□□ -0.06
CLK3-224ENST00000568605 BAG4O95429 457 aaKnown RBP14.67□□□□□ -0.06
CLK3-224ENST00000568605 PARNO95453 639 aaKnown RBP14.67□□□□□ -0.06
CLK3-224ENST00000568605 CCNE2O96020 404 aa14.67□□□□□ -0.06
CLK3-224ENST00000568605 RPLP2P05387 115 aaKnown RBP14.67□□□□□ -0.06
CLK3-224ENST00000568605 PFKMP08237 780 aa14.67□□□□□ -0.06
CLK3-224ENST00000568605 MARK3P27448 753 aa14.67□□□□□ -0.06
CLK3-224ENST00000568605 HOXC8P31273 242 aa14.67□□□□□ -0.06
CLK3-224ENST00000568605 CYP2C18P33260 490 aa14.67□□□□□ -0.06
CLK3-224ENST00000568605 RFC2P35250 354 aa14.67□□□□□ -0.06
CLK3-224ENST00000568605 SLFN12Q8IYM2 578 aa14.67□□□□□ -0.06
CLK3-224ENST00000568605 FAM167AQ96KS9 214 aa14.67□□□□□ -0.06
CLK3-224ENST00000568605 FAM20AQ96MK3 541 aa14.67□□□□□ -0.06
CLK3-224ENST00000568605 MTIF3Q9H2K0 278 aaKnown RBP14.67□□□□□ -0.06
CLK3-224ENST00000568605 NOL7Q9UMY1 257 aaKnown RBP14.67□□□□□ -0.06
CLK3-224ENST00000568605 PCDHA10Q9Y5I2 948 aa14.67□□□□□ -0.06
CLK3-224ENST00000568605 COL1A2P08123 1366 aa14.66□□□□□ -0.06
CLK3-224ENST00000568605 IGKV6D-21A0A0A0MT36 114 aa14.66□□□□□ -0.06
CLK3-224ENST00000568605 H3BQV1 296 aa14.66□□□□□ -0.06
CLK3-224ENST00000568605 CHMP2AO43633 222 aa14.66□□□□□ -0.06
CLK3-224ENST00000568605 SLC37A4O43826 429 aa14.66□□□□□ -0.06
CLK3-224ENST00000568605 NEMFO60524 1076 aa14.66□□□□□ -0.06
CLK3-224ENST00000568605 CAND2O75155 1236 aa14.66□□□□□ -0.06
CLK3-224ENST00000568605 ITGB8P26012 769 aa14.66□□□□□ -0.06
CLK3-224ENST00000568605 GJB2P29033 226 aa14.66□□□□□ -0.06
CLK3-224ENST00000568605 RBL2Q08999 1139 aa14.66□□□□□ -0.06
CLK3-224ENST00000568605 ORC2Q13416 577 aaPredicted RBP14.66□□□□□ -0.06
CLK3-224ENST00000568605 HABP4Q5JVS0 413 aaKnown RBP14.66□□□□□ -0.06
CLK3-224ENST00000568605 PDXDC2PQ6P474 469 aa14.66□□□□□ -0.06
CLK3-224ENST00000568605 ABHD15Q6UXT9 468 aa14.66□□□□□ -0.06
CLK3-224ENST00000568605 SERINC5Q86VE9 423 aa14.66□□□□□ -0.06
CLK3-224ENST00000568605 CCDC60Q8IWA6 550 aaPredicted RBP14.66□□□□□ -0.06
CLK3-224ENST00000568605 RPUSD2Q8IZ73 545 aaKnown RBP14.66□□□□□ -0.06
CLK3-224ENST00000568605 ETNPPLQ8TBG4 499 aa14.66□□□□□ -0.06
CLK3-224ENST00000568605 LMBR1Q8WVP7 490 aa14.66□□□□□ -0.06
CLK3-224ENST00000568605 UIMC1Q96RL1 719 aa14.66□□□□□ -0.06
CLK3-224ENST00000568605 RNPEPQ9H4A4 650 aa14.66□□□□□ -0.06
CLK3-224ENST00000568605 DISC1Q9NRI5 854 aa14.66□□□□□ -0.06
CLK3-224ENST00000568605 TUBE1Q9UJT0 475 aa14.66□□□□□ -0.06
CLK3-224ENST00000568605 TELO2Q9Y4R8 837 aa14.66□□□□□ -0.06
CLK3-224ENST00000568605 UMODL1Q5DID0 1318 aa14.66□□□□□ -0.06
CLK3-224ENST00000568605 IGSF9BQ9UPX0 1349 aa14.66□□□□□ -0.06
CLK3-224ENST00000568605 MYH11P35749 1972 aa14.65□□□□□ -0.06
CLK3-224ENST00000568605 POTEB3A0JP26 581 aa14.65□□□□□ -0.06
CLK3-224ENST00000568605 FAM205CA6NFA0 338 aa14.65□□□□□ -0.06
CLK3-224ENST00000568605 RRN3P2A6NIE6 340 aa14.65□□□□□ -0.06
CLK3-224ENST00000568605 EDIL3O43854 480 aa14.65□□□□□ -0.06
CLK3-224ENST00000568605 PSMD10O75832 226 aa14.65□□□□□ -0.06
CLK3-224ENST00000568605 CSF2RAP15509 400 aa14.65□□□□□ -0.06
CLK3-224ENST00000568605 GRIK4Q16099 956 aa14.65□□□□□ -0.06
CLK3-224ENST00000568605 TAF2Q6P1X5 1199 aa14.65□□□□□ -0.06
CLK3-224ENST00000568605 POTEBQ6S5H4 581 aa14.65□□□□□ -0.06
CLK3-224ENST00000568605 LRRC8DQ7L1W4 858 aa14.65□□□□□ -0.06
CLK3-224ENST00000568605 MIER3Q7Z3K6 550 aa14.65□□□□□ -0.06
CLK3-224ENST00000568605 RSPH3Q86UC2 560 aa14.65□□□□□ -0.06
CLK3-224ENST00000568605 NOSTRINQ8IVI9 506 aa14.65□□□□□ -0.06
CLK3-224ENST00000568605 HSCBQ8IWL3 235 aa14.65□□□□□ -0.06
CLK3-224ENST00000568605 CKAP2LQ8IYA6 745 aa14.65□□□□□ -0.06
CLK3-224ENST00000568605 WNT8AQ9H1J5 351 aa14.65□□□□□ -0.06
CLK3-224ENST00000568605 KCNMB3Q9NPA1 279 aa14.65□□□□□ -0.06
CLK3-224ENST00000568605 IL23AQ9NPF7 189 aa14.65□□□□□ -0.06
CLK3-224ENST00000568605 CEP131Q9UPN4 1083 aa14.65□□□□□ -0.06
CLK3-224ENST00000568605 NLRC5Q86WI3 1866 aa14.64□□□□□ -0.07
CLK3-224ENST00000568605 K7ELQ4 463 aaPredicted RBP14.64□□□□□ -0.07
CLK3-224ENST00000568605 HBP1O60381 514 aa14.64□□□□□ -0.07
CLK3-224ENST00000568605 DKC1O60832 514 aaKnown RBP eCLIP14.64□□□□□ -0.07
CLK3-224ENST00000568605 ACTN1P12814 892 aa14.64□□□□□ -0.07
CLK3-224ENST00000568605 SELPP16109 830 aa14.64□□□□□ -0.07
CLK3-224ENST00000568605 PDCP20941 246 aa14.64□□□□□ -0.07
CLK3-224ENST00000568605 TRAPPC10P48553 1259 aa14.64□□□□□ -0.07
CLK3-224ENST00000568605 CCL23P55773 120 aa14.64□□□□□ -0.07
CLK3-224ENST00000568605 PLCB4Q15147 1175 aa14.64□□□□□ -0.07
CLK3-224ENST00000568605 EARS2Q5JPH6 523 aaKnown RBP14.64□□□□□ -0.07
CLK3-224ENST00000568605 SWSAP1Q6NVH7 229 aa14.64□□□□□ -0.07
CLK3-224ENST00000568605 ATP8B4Q8TF62 1192 aa14.64□□□□□ -0.07
CLK3-224ENST00000568605 BBXQ8WY36 941 aaPredicted RBP14.64□□□□□ -0.07
CLK3-224ENST00000568605 RNPC3Q96LT9 517 aaKnown RBP14.64□□□□□ -0.07
CLK3-224ENST00000568605 PCYT2Q99447 389 aa14.64□□□□□ -0.07
CLK3-224ENST00000568605 UNC45AQ9H3U1 944 aa14.64□□□□□ -0.07
CLK3-224ENST00000568605 SETD4Q9NVD3 440 aa14.64□□□□□ -0.07
CLK3-224ENST00000568605 GABBR1Q9UBS5 961 aa14.64□□□□□ -0.07
CLK3-224ENST00000568605 TREHO43280 583 aa14.63□□□□□ -0.07
CLK3-224ENST00000568605 IQCF3P0C7M6 154 aa14.63□□□□□ -0.07
CLK3-224ENST00000568605 CKBP12277 381 aa14.63□□□□□ -0.07
CLK3-224ENST00000568605 THPOP40225 353 aa14.63□□□□□ -0.07
CLK3-224ENST00000568605 IGBP1P78318 339 aa14.63□□□□□ -0.07
CLK3-224ENST00000568605 PPP2R5CQ13362 524 aa14.63□□□□□ -0.07
CLK3-224ENST00000568605 CUL4AQ13619 759 aa14.63□□□□□ -0.07
CLK3-224ENST00000568605 CALCRLQ16602 461 aa14.63□□□□□ -0.07
CLK3-224ENST00000568605 MCTP1Q6DN14 999 aa14.63□□□□□ -0.07
CLK3-224ENST00000568605 SCLYQ96I15 445 aa14.63□□□□□ -0.07
CLK3-224ENST00000568605 CTAGE1Q96RT6 745 aa14.63□□□□□ -0.07
CLK3-224ENST00000568605 PCDH10Q9P2E7 1040 aa14.63□□□□□ -0.07
CLK3-224ENST00000568605 MAFBQ9Y5Q3 323 aaPredicted RBP14.63□□□□□ -0.07
CLK3-224ENST00000568605 INSRRP14616 1297 aa14.62□□□□□ -0.07
CLK3-224ENST00000568605 U2AF2P26368 475 aaKnown RBP eCLIP14.62□□□□□ -0.073e-6■■□□□ 13
Retrieved 100 of 20,778 RNA–protein pairs in 2096.4 ms