RNA–Protein interactions for RNA: ENST00000529288.1

CPSF1-204, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 2

Gene CPSF1, Length 588 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-204ENST00000529288 PPP1R18Q6NYC8 613 aa14.84□□□□□ -0.03
CPSF1-204ENST00000529288 EP400NLQ6ZTU2 488 aa14.84□□□□□ -0.03
CPSF1-204ENST00000529288 Q6ZUG5 572 aa14.84□□□□□ -0.03
CPSF1-204ENST00000529288 JAKMIP1Q96N16 626 aaKnown RBP14.84□□□□□ -0.03
CPSF1-204ENST00000529288 CDY2AQ9Y6F7 541 aa14.84□□□□□ -0.03
CPSF1-204ENST00000529288 RRN3P2A6NIE6 340 aa14.83□□□□□ -0.04
CPSF1-204ENST00000529288 BACH1O14867 736 aa14.83□□□□□ -0.04
CPSF1-204ENST00000529288 HMGB1P09429 215 aaKnown RBP14.83□□□□□ -0.04
CPSF1-204ENST00000529288 STAT5BP51692 787 aa14.83□□□□□ -0.04
CPSF1-204ENST00000529288 ACTR2P61160 394 aa14.83□□□□□ -0.04
CPSF1-204ENST00000529288 FUT2Q10981 343 aa14.83□□□□□ -0.04
CPSF1-204ENST00000529288 MKRN4PQ13434 485 aaPredicted RBP14.83□□□□□ -0.04
CPSF1-204ENST00000529288 GPM6BQ13491 265 aa14.83□□□□□ -0.04
CPSF1-204ENST00000529288 LPIN1Q14693 890 aa14.83□□□□□ -0.04
CPSF1-204ENST00000529288 TSGA10IPQ3SY00 556 aa14.83□□□□□ -0.04
CPSF1-204ENST00000529288 CEP55Q53EZ4 464 aa14.83□□□□□ -0.04
CPSF1-204ENST00000529288 TRAPPC12Q8WVT3 735 aa14.83□□□□□ -0.04
CPSF1-204ENST00000529288 IL17RAQ96F46 866 aa14.83□□□□□ -0.04
CPSF1-204ENST00000529288 PCYT2Q99447 389 aa14.83□□□□□ -0.04
CPSF1-204ENST00000529288 AGO4Q9HCK5 861 aaKnown RBP14.83□□□□□ -0.04
CPSF1-204ENST00000529288 BARHL2Q9NY43 387 aa14.83□□□□□ -0.04
CPSF1-204ENST00000529288 M0QZ92 97 aa14.82□□□□□ -0.04
CPSF1-204ENST00000529288 PPFIA3O75145 1194 aa14.82□□□□□ -0.04
CPSF1-204ENST00000529288 CSPG5O95196 566 aa14.82□□□□□ -0.04
CPSF1-204ENST00000529288 MRPS6P82932 125 aaKnown RBP14.82□□□□□ -0.04
CPSF1-204ENST00000529288 MGAT3Q09327 533 aa14.82□□□□□ -0.04
CPSF1-204ENST00000529288 ITGB3BPQ13352 177 aaPredicted RBP14.82□□□□□ -0.04
CPSF1-204ENST00000529288 PLCB4Q15147 1175 aa14.82□□□□□ -0.04
CPSF1-204ENST00000529288 PTPROQ16827 1216 aa14.82□□□□□ -0.04
CPSF1-204ENST00000529288 MARCH8Q5T0T0 291 aa14.82□□□□□ -0.04
CPSF1-204ENST00000529288 PLA2G4DQ86XP0 818 aa14.82□□□□□ -0.04
CPSF1-204ENST00000529288 TMEM192Q8IY95 271 aa14.82□□□□□ -0.04
CPSF1-204ENST00000529288 FIBCD1Q8N539 461 aa14.82□□□□□ -0.04
CPSF1-204ENST00000529288 SP7Q8TDD2 431 aaPredicted RBP14.82□□□□□ -0.04
CPSF1-204ENST00000529288 TNPO1Q92973 898 aaKnown RBP14.82□□□□□ -0.04
CPSF1-204ENST00000529288 BRF1Q92994 677 aa14.82□□□□□ -0.04
CPSF1-204ENST00000529288 CCDC136Q96JN2 1154 aa14.82□□□□□ -0.04
CPSF1-204ENST00000529288 SAMD11Q96NU1 681 aa14.82□□□□□ -0.04
CPSF1-204ENST00000529288 FAM217BQ9NTX9 383 aaPredicted RBP14.82□□□□□ -0.04
CPSF1-204ENST00000529288 CCDC196A0A1B0GTZ2 297 aa14.81□□□□□ -0.04
CPSF1-204ENST00000529288 hCG_1984214I3L0E3 225 aa14.81□□□□□ -0.04
CPSF1-204ENST00000529288 ENPP3O14638 875 aa14.81□□□□□ -0.04
CPSF1-204ENST00000529288 CD52P31358 61 aa14.81□□□□□ -0.04
CPSF1-204ENST00000529288 CTNNB1P35222 781 aa14.81□□□□□ -0.04
CPSF1-204ENST00000529288 AKAP17AQ02040 695 aaKnown RBP14.81□□□□□ -0.04
CPSF1-204ENST00000529288 AP3B2Q13367 1082 aa14.81□□□□□ -0.04
CPSF1-204ENST00000529288 FBXO47Q5MNV8 452 aa14.81□□□□□ -0.04
CPSF1-204ENST00000529288 IER5Q5VY09 327 aa14.81□□□□□ -0.04
CPSF1-204ENST00000529288 BLOC1S2Q6QNY1 142 aa14.81□□□□□ -0.04
CPSF1-204ENST00000529288 TRMT1LQ7Z2T5 733 aaKnown RBP14.81□□□□□ -0.04
CPSF1-204ENST00000529288 RPAINQ86UA6 219 aa14.81□□□□□ -0.04
CPSF1-204ENST00000529288 ZNF713Q8N859 430 aaPredicted RBP14.81□□□□□ -0.04
CPSF1-204ENST00000529288 GLT8D2Q9H1C3 349 aa14.81□□□□□ -0.04
CPSF1-204ENST00000529288 UBE2ZQ9H832 354 aaPredicted RBP14.81□□□□□ -0.04
CPSF1-204ENST00000529288 GINS2Q9Y248 185 aa14.81□□□□□ -0.04
CPSF1-204ENST00000529288 NFASCO94856 1347 aa14.81□□□□□ -0.04
CPSF1-204ENST00000529288 DOCK5Q9H7D0 1870 aa14.8□□□□□ -0.04
CPSF1-204ENST00000529288 PTPRSQ13332 1948 aa14.8□□□□□ -0.04
CPSF1-204ENST00000529288 POTEB3A0JP26 581 aa14.8□□□□□ -0.04
CPSF1-204ENST00000529288 MBLAC1A4D2B0 266 aaPredicted RBP14.8□□□□□ -0.04
CPSF1-204ENST00000529288 MEIS1O00470 390 aa14.8□□□□□ -0.04
CPSF1-204ENST00000529288 SCG2P13521 617 aa14.8□□□□□ -0.04
CPSF1-204ENST00000529288 COL9A1P20849 921 aa14.8□□□□□ -0.04
CPSF1-204ENST00000529288 KCNA5P22460 613 aa14.8□□□□□ -0.04
CPSF1-204ENST00000529288 SREBF1P36956 1147 aa14.8□□□□□ -0.04
CPSF1-204ENST00000529288 PFKFB3Q16875 520 aaPredicted RBP14.8□□□□□ -0.04
CPSF1-204ENST00000529288 POTEBQ6S5H4 581 aa14.8□□□□□ -0.04
CPSF1-204ENST00000529288 TSHZ1Q6ZSZ6 1077 aa14.8□□□□□ -0.04
CPSF1-204ENST00000529288 PLPPR4Q7Z2D5 763 aa14.8□□□□□ -0.04
CPSF1-204ENST00000529288 MRPL38Q96DV4 380 aaKnown RBP14.8□□□□□ -0.04
CPSF1-204ENST00000529288 AGO3Q9H9G7 860 aaKnown RBP14.8□□□□□ -0.04
CPSF1-204ENST00000529288 C6orf50Q9HD87 102 aa14.8□□□□□ -0.04
CPSF1-204ENST00000529288 TRPV2Q9Y5S1 764 aa14.8□□□□□ -0.04
CPSF1-204ENST00000529288 SNX14Q9Y5W7 946 aa14.8□□□□□ -0.04
CPSF1-204ENST00000529288 PRRC2BQ5JSZ5 2229 aaKnown RBP14.8□□□□□ -0.04
CPSF1-204ENST00000529288 H3BNC9 293 aa14.79□□□□□ -0.04
CPSF1-204ENST00000529288 REV3LO60673 3130 aa14.79□□□□□ -0.04
CPSF1-204ENST00000529288 CLK2P49760 499 aaKnown RBP14.79□□□□□ -0.04
CPSF1-204ENST00000529288 BTG3Q14201 252 aaPredicted RBP14.79□□□□□ -0.04
CPSF1-204ENST00000529288 FAM160B1Q5W0V3 765 aa14.79□□□□□ -0.04
CPSF1-204ENST00000529288 CKAP2LQ8IYA6 745 aa14.79□□□□□ -0.04
CPSF1-204ENST00000529288 BANK1Q8NDB2 785 aa14.79□□□□□ -0.04
CPSF1-204ENST00000529288 PHKBQ93100 1093 aa14.79□□□□□ -0.04
CPSF1-204ENST00000529288 TCEAL9Q9UHQ7 104 aa14.79□□□□□ -0.04
CPSF1-204ENST00000529288 RAPGEFL1Q9UHV5 662 aa14.79□□□□□ -0.04
CPSF1-204ENST00000529288 PCDHA2Q9Y5H9 948 aa14.79□□□□□ -0.04
CPSF1-204ENST00000529288 XIRP2A4UGR9 3374 aa14.79□□□□□ -0.04
CPSF1-204ENST00000529288 FAM86B1E9PN63 330 aa14.78□□□□□ -0.04
CPSF1-204ENST00000529288 ADAMTS3O15072 1205 aa14.78□□□□□ -0.04
CPSF1-204ENST00000529288 CCNE2O96020 404 aa14.78□□□□□ -0.04
CPSF1-204ENST00000529288 FAM86B2P0C5J1 330 aa14.78□□□□□ -0.04
CPSF1-204ENST00000529288 KLRC1P26715 233 aa14.78□□□□□ -0.04
CPSF1-204ENST00000529288 HSPA4P34932 840 aa14.78□□□□□ -0.04
CPSF1-204ENST00000529288 CCT2P78371 535 aaKnown RBP14.78□□□□□ -0.04
CPSF1-204ENST00000529288 KRT76Q01546 638 aa14.78□□□□□ -0.04
CPSF1-204ENST00000529288 NFX1Q12986 1120 aaKnown RBP14.78□□□□□ -0.04
CPSF1-204ENST00000529288 PAK2Q13177 524 aa14.78□□□□□ -0.04
CPSF1-204ENST00000529288 TMEM266Q2M3C6 531 aa14.78□□□□□ -0.04
CPSF1-204ENST00000529288 TIGD5Q53EQ6 642 aa14.78□□□□□ -0.04
CPSF1-204ENST00000529288 TCEAL5Q5H9L2 206 aa14.78□□□□□ -0.04
Retrieved 100 of 20,778 RNA–protein pairs in 41.6 ms