RNA–Protein interactions for RNA: YER139C

RTR1, Transcript of CTD phosphatase, yeastyeast

Gene RTR1, Length 681 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
RTR1YER139C RPA49Q01080 415 aaPredicted RBP1.63□□□□□ -2.15
RTR1YER139C YMR155WQ03795 547 aa1.63□□□□□ -2.15
RTR1YER139C NDE2Q07500 545 aa1.63□□□□□ -2.15
RTR1YER139C RRG1Q12167 365 aaPredicted RBP1.63□□□□□ -2.15
RTR1YER139C YRM1Q12340 786 aa1.63□□□□□ -2.15
RTR1YER139C RAX2Q12465 1220 aa1.63□□□□□ -2.15
RTR1YER139C YLR278CQ05854 1341 aa1.63□□□□□ -2.15
RTR1YER139C SAL1D6W196 494 aa1.62□□□□□ -2.15
RTR1YER139C HIS4P00815 799 aaKnown RBP1.62□□□□□ -2.15
RTR1YER139C RIP1P08067 215 aa1.62□□□□□ -2.15
RTR1YER139C ERG3P32353 365 aa1.62□□□□□ -2.15
RTR1YER139C NTC20P38302 140 aaPredicted RBP1.62□□□□□ -2.15
RTR1YER139C YHR054CP38780 354 aa1.62□□□□□ -2.15
RTR1YER139C LYS1P38998 373 aaRIP-Chip data1.62□□□□□ -2.15not detected
RTR1YER139C SAS2P40963 338 aa1.62□□□□□ -2.15
RTR1YER139C HMS2P47175 358 aa1.62□□□□□ -2.15
RTR1YER139C YGL138CP53122 345 aa1.62□□□□□ -2.15
RTR1YER139C ADA2Q02336 434 aa1.62□□□□□ -2.15
RTR1YER139C RRP45Q05636 305 aaKnown RBP1.62□□□□□ -2.15
RTR1YER139C REX4Q08237 289 aa1.62□□□□□ -2.15
RTR1YER139C SFI1Q12369 946 aa1.62□□□□□ -2.15
RTR1YER139C TEF1P02994 458 aaKnown RBP1.61□□□□□ -2.15
RTR1YER139C NAM2P11325 894 aa1.61□□□□□ -2.15
RTR1YER139C CLC1P17891 233 aa1.61□□□□□ -2.15
RTR1YER139C REC107P21651 314 aa1.61□□□□□ -2.15
RTR1YER139C RHB1P25378 209 aa1.61□□□□□ -2.15
RTR1YER139C YJR011CP47086 261 aaPredicted RBP1.61□□□□□ -2.15
RTR1YER139C MDE1P47095 244 aa1.61□□□□□ -2.15
RTR1YER139C HSP42Q12329 375 aa1.61□□□□□ -2.15
RTR1YER139C ARG4P04076 463 aaPredicted RBP1.6□□□□□ -2.15
RTR1YER139C SEC63P14906 663 aa1.6□□□□□ -2.15
RTR1YER139C SPO7P18410 259 aa1.6□□□□□ -2.15
RTR1YER139C YCR051WP25631 222 aa1.6□□□□□ -2.15
RTR1YER139C BEM1P29366 551 aa1.6□□□□□ -2.15
RTR1YER139C YME2P32843 850 aa1.6□□□□□ -2.15
RTR1YER139C BYE1P36106 594 aa1.6□□□□□ -2.15
RTR1YER139C BAT1P38891 393 aaKnown RBP1.6□□□□□ -2.15
RTR1YER139C COS5P47187 383 aa1.6□□□□□ -2.15
RTR1YER139C SRB7P47822 140 aa1.6□□□□□ -2.15
RTR1YER139C PHB2P50085 310 aa1.6□□□□□ -2.15
RTR1YER139C YPS5P53057 165 aa1.6□□□□□ -2.15
RTR1YER139C BET5Q03630 159 aa1.6□□□□□ -2.15
RTR1YER139C ARX1Q03862 593 aaKnown RBP1.6□□□□□ -2.15
RTR1YER139C COS7Q07788 383 aa1.6□□□□□ -2.15
RTR1YER139C VAM3Q12241 283 aa1.6□□□□□ -2.15
RTR1YER139C JID1Q12350 301 aa1.6□□□□□ -2.15
RTR1YER139C ORT1Q12375 292 aa1.6□□□□□ -2.15
RTR1YER139C PGA3Q12746 312 aaKnown RBP1.6□□□□□ -2.15
RTR1YER139C YRF1-4O13559 1382 aa1.59□□□□□ -2.15
RTR1YER139C CLN1P20437 546 aa1.59□□□□□ -2.15
RTR1YER139C SIN4P32259 974 aa1.59□□□□□ -2.15
RTR1YER139C MMS4P38257 691 aa1.59□□□□□ -2.15
RTR1YER139C YNR048WP53740 393 aa1.59□□□□□ -2.15
RTR1YER139C ROY1Q04847 553 aa1.59□□□□□ -2.15
RTR1YER139C DIS3Q08162 1001 aaKnown RBP1.59□□□□□ -2.15
RTR1YER139C SCM3Q12334 223 aa1.59□□□□□ -2.15
RTR1YER139C AFI1Q99222 893 aa1.59□□□□□ -2.15
RTR1YER139C ILV5P06168 395 aaKnown RBP1.58□□□□□ -2.16
RTR1YER139C KRE2P27809 442 aa1.58□□□□□ -2.16
RTR1YER139C TFB1P32776 642 aa1.58□□□□□ -2.16
RTR1YER139C SOR1P35497 357 aaKnown RBP1.58□□□□□ -2.16
RTR1YER139C RFC3P38629 340 aa1.58□□□□□ -2.16
RTR1YER139C NOC2P39744 710 aaKnown RBP1.58□□□□□ -2.16
RTR1YER139C OXA1P39952 402 aa1.58□□□□□ -2.16
RTR1YER139C LSM5P40089 93 aaKnown RBP1.58□□□□□ -2.16
RTR1YER139C BNI5P53890 448 aaKnown RBP1.58□□□□□ -2.16
RTR1YER139C SKO1Q02100 647 aa1.58□□□□□ -2.16
RTR1YER139C OAZ1Q02803 292 aa1.58□□□□□ -2.16
RTR1YER139C KAP120Q02932 1032 aa1.58□□□□□ -2.16
RTR1YER139C SPC19Q03954 165 aa1.58□□□□□ -2.16
RTR1YER139C DON1Q05610 365 aa1.58□□□□□ -2.16
RTR1YER139C MDM30Q05930 598 aa1.58□□□□□ -2.16
RTR1YER139C SOR2Q07786 357 aa1.58□□□□□ -2.16
RTR1YER139C SGT1Q08446 395 aa1.58□□□□□ -2.16
RTR1YER139C TY1B-AO13527 1196 aaKnown RBP1.57□□□□□ -2.16
RTR1YER139C HOM3P10869 527 aa1.57□□□□□ -2.16
RTR1YER139C SPO12P17123 173 aa1.57□□□□□ -2.16
RTR1YER139C URA4P20051 364 aa1.57□□□□□ -2.16
RTR1YER139C CTR86P25355 563 aa1.57□□□□□ -2.16
RTR1YER139C ADK2P26364 225 aa1.57□□□□□ -2.16
RTR1YER139C ERV1P27882 189 aa1.57□□□□□ -2.16
RTR1YER139C BRF1P29056 596 aa1.57□□□□□ -2.16
RTR1YER139C NFU1P32860 256 aa1.57□□□□□ -2.16
RTR1YER139C RRP4P38792 359 aaKnown RBP1.57□□□□□ -2.16
RTR1YER139C AZR1P50080 613 aa1.57□□□□□ -2.16
RTR1YER139C YGR250CP53316 781 aaKnown RBP1.57□□□□□ -2.16
RTR1YER139C GIP3Q03016 1276 aa1.57□□□□□ -2.16
RTR1YER139C YMR130WQ04223 302 aa1.57□□□□□ -2.16
RTR1YER139C PIN3Q06449 215 aa1.57□□□□□ -2.16
RTR1YER139C SKI7Q08491 747 aaPredicted RBP1.57□□□□□ -2.16
RTR1YER139C RKM1Q08961 583 aaPredicted RBP1.57□□□□□ -2.16
RTR1YER139C SLF1Q12034 447 aaKnown RBP1.57□□□□□ -2.16
RTR1YER139C VPS54Q12071 889 aa1.57□□□□□ -2.16
RTR1YER139C SCEIP03882 235 aa1.56□□□□□ -2.16
RTR1YER139C TPS2P31688 896 aaKnown RBP1.56□□□□□ -2.16
RTR1YER139C APE3P37302 537 aaKnown RBP1.56□□□□□ -2.16
RTR1YER139C RRN10P38204 145 aa1.56□□□□□ -2.16
RTR1YER139C PCF11P39081 626 aaPredicted RBP1.56□□□□□ -2.16
RTR1YER139C ALD5P40047 520 aaKnown RBP1.56□□□□□ -2.16
RTR1YER139C PHO86P46956 311 aa1.56□□□□□ -2.16
Retrieved 100 of 5,963 RNA–protein pairs in 24.5 ms