RNA–Protein interactions for RNA: ENST00000479712.1

UPF3A-205, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 2

Gene UPF3A, Length 423 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-205ENST00000479712 IQCEQ6IPM2 695 aa7.18□□□□□ -1.26
UPF3A-205ENST00000479712 PKN3Q6P5Z2 889 aa7.18□□□□□ -1.26
UPF3A-205ENST00000479712 UBE2R2Q712K3 238 aaPredicted RBP7.18□□□□□ -1.26
UPF3A-205ENST00000479712 CCDC103Q8IW40 242 aa7.18□□□□□ -1.26
UPF3A-205ENST00000479712 PLD6Q8N2A8 252 aaKnown RBP7.18□□□□□ -1.26
UPF3A-205ENST00000479712 ATL2Q8NHH9 583 aa7.18□□□□□ -1.26
UPF3A-205ENST00000479712 PUM2Q8TB72 1066 aaKnown RBP eCLIP7.18□□□□□ -1.26
UPF3A-205ENST00000479712 NETO1Q8TDF5 533 aa7.18□□□□□ -1.26
UPF3A-205ENST00000479712 SEMA3GQ9NS98 782 aa7.18□□□□□ -1.26
UPF3A-205ENST00000479712 AP5S1Q9NUS5 200 aa7.18□□□□□ -1.26
UPF3A-205ENST00000479712 KLHL42Q9P2K6 505 aa7.18□□□□□ -1.26
UPF3A-205ENST00000479712 PCDHA8Q9Y5H6 950 aa7.18□□□□□ -1.26
UPF3A-205ENST00000479712 EIF2AK4Q9P2K8 1649 aaKnown RBP7.18□□□□□ -1.26
UPF3A-205ENST00000479712 METP08581 1390 aa7.18□□□□□ -1.26
UPF3A-205ENST00000479712 COL14A1Q05707 1796 aaKnown RBP7.18□□□□□ -1.26
UPF3A-205ENST00000479712 SBF2Q86WG5 1849 aa7.17□□□□□ -1.26
UPF3A-205ENST00000479712 DUOX2Q9NRD8 1548 aa7.17□□□□□ -1.26
UPF3A-205ENST00000479712 CUL9Q8IWT3 2517 aa7.17□□□□□ -1.26
UPF3A-205ENST00000479712 TRBV23OR9-2A0A075B6M9 112 aa7.17□□□□□ -1.26
UPF3A-205ENST00000479712 NPHP3-ACAD11A0A0J9YXS1 232 aa7.17□□□□□ -1.26
UPF3A-205ENST00000479712 FGF10O15520 208 aaPredicted RBP7.17□□□□□ -1.26
UPF3A-205ENST00000479712 NPTXRO95502 500 aa7.17□□□□□ -1.26
UPF3A-205ENST00000479712 PDGFRBP09619 1106 aa7.17□□□□□ -1.26
UPF3A-205ENST00000479712 CPEP16870 476 aa7.17□□□□□ -1.26
UPF3A-205ENST00000479712 PCBP1Q15365 356 aaKnown RBP eCLIP7.17□□□□□ -1.26
UPF3A-205ENST00000479712 ZNF827Q17R98 1081 aa7.17□□□□□ -1.26
UPF3A-205ENST00000479712 CFAP100Q494V2 611 aa7.17□□□□□ -1.26
UPF3A-205ENST00000479712 TMPRSS7Q7RTY8 843 aa7.17□□□□□ -1.26
UPF3A-205ENST00000479712 FERMT3Q86UX7 667 aa7.17□□□□□ -1.26
UPF3A-205ENST00000479712 CREG2Q8IUH2 290 aa7.17□□□□□ -1.26
UPF3A-205ENST00000479712 SMC1BQ8NDV3 1235 aa7.17□□□□□ -1.26
UPF3A-205ENST00000479712 PCDHA11Q9Y5I1 949 aa7.17□□□□□ -1.26
UPF3A-205ENST00000479712 CCDC18Q5T9S5 1454 aa7.17□□□□□ -1.26
UPF3A-205ENST00000479712 ARHGEF5Q12774 1597 aa7.16□□□□□ -1.26
UPF3A-205ENST00000479712 NRXN3Q9Y4C0 1643 aa7.16□□□□□ -1.26
UPF3A-205ENST00000479712 TMEM265A0A087WTH1 108 aa7.16□□□□□ -1.26
UPF3A-205ENST00000479712 ARNTLO00327 626 aa7.16□□□□□ -1.26
UPF3A-205ENST00000479712 MSCO60682 206 aa7.16□□□□□ -1.26
UPF3A-205ENST00000479712 S100BP04271 92 aaPredicted RBP7.16□□□□□ -1.26
UPF3A-205ENST00000479712 LCP1P13796 627 aa7.16□□□□□ -1.26
UPF3A-205ENST00000479712 STRN3Q13033 797 aa7.16□□□□□ -1.26
UPF3A-205ENST00000479712 DOC2BQ14184 412 aa7.16□□□□□ -1.26
UPF3A-205ENST00000479712 PIK3R6Q5UE93 754 aa7.16□□□□□ -1.26
UPF3A-205ENST00000479712 CDCA2Q69YH5 1023 aaPredicted RBP7.16□□□□□ -1.26
UPF3A-205ENST00000479712 ZCCHC8Q6NZY4 707 aaKnown RBP7.16□□□□□ -1.26
UPF3A-205ENST00000479712 STRA8Q7Z7C7 330 aa7.16□□□□□ -1.26
UPF3A-205ENST00000479712 NAT16Q8N8M0 369 aa7.16□□□□□ -1.26
UPF3A-205ENST00000479712 PTCHD1Q96NR3 888 aa7.16□□□□□ -1.26
UPF3A-205ENST00000479712 MMP19Q99542 508 aa7.16□□□□□ -1.26
UPF3A-205ENST00000479712 ALG1Q9BT22 464 aa7.16□□□□□ -1.26
UPF3A-205ENST00000479712 IRF2BPLQ9H1B7 796 aa7.16□□□□□ -1.26
UPF3A-205ENST00000479712 ATP13A1Q9HD20 1204 aa7.16□□□□□ -1.26
UPF3A-205ENST00000479712 PIM2Q9P1W9 311 aa7.16□□□□□ -1.26
UPF3A-205ENST00000479712 SNX11Q9Y5W9 270 aa7.16□□□□□ -1.26
UPF3A-205ENST00000479712 TNS3Q68CZ2 1445 aa7.16□□□□□ -1.26
UPF3A-205ENST00000479712 RRBP1Q9P2E9 1410 aaKnown RBP7.16□□□□□ -1.26
UPF3A-205ENST00000479712 ARVCFO00192 962 aa7.15□□□□□ -1.26
UPF3A-205ENST00000479712 FXR1P51114 621 aaKnown RBP eCLIP7.15□□□□□ -1.26
UPF3A-205ENST00000479712 EGR3Q06889 387 aa7.15□□□□□ -1.26
UPF3A-205ENST00000479712 LAPTM5Q13571 262 aa7.15□□□□□ -1.26
UPF3A-205ENST00000479712 DHCR24Q15392 516 aa7.15□□□□□ -1.26
UPF3A-205ENST00000479712 SEPT7Q16181 437 aaKnown RBP7.15□□□□□ -1.26
UPF3A-205ENST00000479712 CYP2R1Q6VVX0 501 aa7.15□□□□□ -1.26
UPF3A-205ENST00000479712 LBX2Q6XYB7 198 aa7.15□□□□□ -1.26
UPF3A-205ENST00000479712 KRT28Q7Z3Y7 464 aa7.15□□□□□ -1.26
UPF3A-205ENST00000479712 DDX53Q86TM3 631 aaKnown RBP7.15□□□□□ -1.26
UPF3A-205ENST00000479712 ZDHHC13Q8IUH4 622 aa7.15□□□□□ -1.26
UPF3A-205ENST00000479712 ZC3H7AQ8IWR0 971 aaKnown RBP7.15□□□□□ -1.26
UPF3A-205ENST00000479712 RCBTB1Q8NDN9 531 aa7.15□□□□□ -1.26
UPF3A-205ENST00000479712 ABCF1Q8NE71 845 aaKnown RBP eCLIP7.15□□□□□ -1.26
UPF3A-205ENST00000479712 CEP89Q96ST8 783 aa7.15□□□□□ -1.26
UPF3A-205ENST00000479712 SAMD15Q9P1V8 674 aa7.15□□□□□ -1.26
UPF3A-205ENST00000479712 ZC3H7BQ9UGR2 993 aaKnown RBP7.15□□□□□ -1.26
UPF3A-205ENST00000479712 LRPPRCP42704 1394 aaKnown RBP7.15□□□□□ -1.26
UPF3A-205ENST00000479712 KCPQ6ZWJ8 1503 aa7.15□□□□□ -1.27
UPF3A-205ENST00000479712 CICQ96RK0 1608 aaPredicted RBP7.15□□□□□ -1.27
UPF3A-205ENST00000479712 COL24A1Q17RW2 1714 aa7.15□□□□□ -1.27
UPF3A-205ENST00000479712 TMEM82A0PJX8 343 aa7.14□□□□□ -1.27
UPF3A-205ENST00000479712 ALG1L2C9J202 215 aa7.14□□□□□ -1.27
UPF3A-205ENST00000479712 MARCH6O60337 910 aa7.14□□□□□ -1.27
UPF3A-205ENST00000479712 TBC1D8O95759 1140 aa7.14□□□□□ -1.27
UPF3A-205ENST00000479712 FOSL1P15407 271 aa7.14□□□□□ -1.27
UPF3A-205ENST00000479712 ITGB7P26010 798 aa7.14□□□□□ -1.27
UPF3A-205ENST00000479712 PMLP29590 882 aa7.14□□□□□ -1.27
UPF3A-205ENST00000479712 TEKQ02763 1124 aa7.14□□□□□ -1.27
UPF3A-205ENST00000479712 PAK1Q13153 545 aa7.14□□□□□ -1.27
UPF3A-205ENST00000479712 FAM50AQ14320 339 aaKnown RBP7.14□□□□□ -1.27
UPF3A-205ENST00000479712 KIZQ2M2Z5 673 aa7.14□□□□□ -1.27
UPF3A-205ENST00000479712 MBLAC2Q68D91 279 aa7.14□□□□□ -1.27
UPF3A-205ENST00000479712 ABHD17CQ6PCB6 329 aa7.14□□□□□ -1.27
UPF3A-205ENST00000479712 WAPLQ7Z5K2 1190 aa7.14□□□□□ -1.27
UPF3A-205ENST00000479712 CPNE8Q86YQ8 564 aa7.14□□□□□ -1.27
UPF3A-205ENST00000479712 GCC1Q96CN9 775 aa7.14□□□□□ -1.27
UPF3A-205ENST00000479712 WNK4Q96J92 1243 aa7.14□□□□□ -1.27
UPF3A-205ENST00000479712 HRASLS5Q96KN8 279 aa7.14□□□□□ -1.27
UPF3A-205ENST00000479712 MCOLN1Q9GZU1 580 aa7.14□□□□□ -1.27
UPF3A-205ENST00000479712 PEAK1Q9H792 1746 aa7.14□□□□□ -1.27
UPF3A-205ENST00000479712 PCDHA2Q9Y5H9 948 aa7.14□□□□□ -1.27
UPF3A-205ENST00000479712 PAPPAQ13219 1627 aa7.13□□□□□ -1.27
UPF3A-205ENST00000479712 PHRF1Q9P1Y6 1649 aaKnown RBP7.13□□□□□ -1.27
Retrieved 100 of 20,778 RNA–protein pairs in 38.3 ms