RNA–Protein interactions for RNA: YER139C

RTR1, Transcript of CTD phosphatase, yeastyeast

Gene RTR1, Length 681 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
RTR1YER139C TSR2Q06672 205 aaKnown RBP1.69□□□□□ -2.14
RTR1YER139C SNX3Q08826 162 aaKnown RBP1.69□□□□□ -2.14
RTR1YER139C RHO2P06781 192 aa1.68□□□□□ -2.14
RTR1YER139C ATP10P18496 279 aa1.68□□□□□ -2.14
RTR1YER139C SLY1P22213 666 aa1.68□□□□□ -2.14
RTR1YER139C PPH22P23595 377 aa1.68□□□□□ -2.14
RTR1YER139C SPB1P25582 841 aaPredicted RBP1.68□□□□□ -2.14
RTR1YER139C MUD1P32605 298 aaKnown RBP1.68□□□□□ -2.14
RTR1YER139C THI2P38141 450 aa1.68□□□□□ -2.14
RTR1YER139C YMR147WP40218 223 aaKnown RBP1.68□□□□□ -2.14
RTR1YER139C MET18P40469 1032 aa1.68□□□□□ -2.14
RTR1YER139C YGR149WP48236 432 aa1.68□□□□□ -2.14
RTR1YER139C RMD9P53140 646 aaKnown RBP1.68□□□□□ -2.14
RTR1YER139C YGR018CP53211 109 aa1.68□□□□□ -2.14
RTR1YER139C JJJ1P53863 590 aa1.68□□□□□ -2.14
RTR1YER139C SLG1P54867 378 aa1.68□□□□□ -2.14
RTR1YER139C COG4Q06096 861 aa1.68□□□□□ -2.14
RTR1YER139C DNL4Q08387 944 aaPredicted RBP1.68□□□□□ -2.14
RTR1YER139C IZH2Q12442 317 aa1.68□□□□□ -2.14
RTR1YER139C RPL3P14126 387 aaKnown RBP1.67□□□□□ -2.14
RTR1YER139C CYS4P32582 507 aaKnown RBP1.67□□□□□ -2.14
RTR1YER139C IES6P32617 166 aa1.67□□□□□ -2.14
RTR1YER139C REC114P32841 428 aa1.67□□□□□ -2.14
RTR1YER139C SWE1P32944 819 aa1.67□□□□□ -2.14
RTR1YER139C SEC66P33754 206 aa1.67□□□□□ -2.14
RTR1YER139C UTP9P38882 575 aaKnown RBP1.67□□□□□ -2.14
RTR1YER139C SMF1P38925 575 aa1.67□□□□□ -2.14
RTR1YER139C NAB3P38996 802 aaKnown RBP RIP-Chip data1.67□□□□□ -2.14not detected
RTR1YER139C ESL1P40456 1118 aa1.67□□□□□ -2.14
RTR1YER139C IRC6P43615 237 aa1.67□□□□□ -2.14
RTR1YER139C ATP22P50273 684 aaPredicted RBP1.67□□□□□ -2.14
RTR1YER139C YIP1P53039 248 aa1.67□□□□□ -2.14
RTR1YER139C DSL1P53847 754 aa1.67□□□□□ -2.14
RTR1YER139C NCS2P53923 493 aaPredicted RBP1.67□□□□□ -2.14
RTR1YER139C TAP42Q04372 366 aa1.67□□□□□ -2.14
RTR1YER139C SOV1Q04748 898 aa1.67□□□□□ -2.14
RTR1YER139C TIM18Q08749 192 aa1.67□□□□□ -2.14
RTR1YER139C GRX6Q12438 231 aa1.67□□□□□ -2.14
RTR1YER139C ADH1P00330 348 aaKnown RBP1.66□□□□□ -2.14
RTR1YER139C SPS4P09937 338 aa1.66□□□□□ -2.14
RTR1YER139C ROX1P25042 368 aa1.66□□□□□ -2.14
RTR1YER139C IME2P32581 645 aa1.66□□□□□ -2.14
RTR1YER139C RML2P32611 393 aa1.66□□□□□ -2.14
RTR1YER139C RTC2P38279 296 aa1.66□□□□□ -2.14
RTR1YER139C OTU2P38747 307 aaKnown RBP1.66□□□□□ -2.14
RTR1YER139C VTC2P43585 828 aa1.66□□□□□ -2.14
RTR1YER139C MNP1P53163 194 aaPredicted RBP1.66□□□□□ -2.14
RTR1YER139C YIF1P53845 314 aaKnown RBP1.66□□□□□ -2.14
RTR1YER139C MDM1Q01846 1127 aa1.66□□□□□ -2.14
RTR1YER139C VPS72Q03388 795 aa1.66□□□□□ -2.14
RTR1YER139C GIR2Q03768 265 aaPredicted RBP1.66□□□□□ -2.14
RTR1YER139C YDR387CQ04162 555 aa1.66□□□□□ -2.14
RTR1YER139C RQC1Q05468 723 aaKnown RBP1.66□□□□□ -2.14
RTR1YER139C LIP2Q06005 328 aa1.66□□□□□ -2.14
RTR1YER139C YPR022CQ12139 1133 aa1.66□□□□□ -2.14
RTR1YER139C RTP1Q12751 981 aa1.66□□□□□ -2.14
RTR1YER139C BEM2P39960 2167 aaKnown RBP1.65□□□□□ -2.14
RTR1YER139C COX4P04037 155 aa1.65□□□□□ -2.15
RTR1YER139C MAS2P11914 482 aa1.65□□□□□ -2.15
RTR1YER139C RED1P14291 827 aa1.65□□□□□ -2.15
RTR1YER139C SNT1P25357 1226 aa1.65□□□□□ -2.15
RTR1YER139C GYP6P32806 458 aa1.65□□□□□ -2.15
RTR1YER139C SAS3P34218 831 aa1.65□□□□□ -2.15
RTR1YER139C DTR1P38125 572 aa1.65□□□□□ -2.15
RTR1YER139C VHC1P38329 1120 aa1.65□□□□□ -2.15
RTR1YER139C KTR5P53966 522 aaPredicted RBP1.65□□□□□ -2.15
RTR1YER139C SYF1Q04048 859 aaPredicted RBP1.65□□□□□ -2.15
RTR1YER139C HSP31Q04432 237 aa1.65□□□□□ -2.15
RTR1YER139C YLR287CQ05881 355 aa1.65□□□□□ -2.15
RTR1YER139C VTA1Q06263 330 aa1.65□□□□□ -2.15
RTR1YER139C SIL1Q08199 421 aa1.65□□□□□ -2.15
RTR1YER139C RTN2Q12443 393 aa1.65□□□□□ -2.15
RTR1YER139C GPH1P06738 902 aaKnown RBP1.64□□□□□ -2.15
RTR1YER139C CBP6P07253 162 aaPredicted RBP1.64□□□□□ -2.15
RTR1YER139C SRV2P17555 526 aaKnown RBP1.64□□□□□ -2.15
RTR1YER139C RPI1P23250 407 aaKnown RBP1.64□□□□□ -2.15
RTR1YER139C APE2P32454 952 aaKnown RBP1.64□□□□□ -2.15
RTR1YER139C HXT3P32466 567 aaKnown RBP1.64□□□□□ -2.15
RTR1YER139C PRP21P32524 280 aaPredicted RBP1.64□□□□□ -2.15
RTR1YER139C NIP100P33420 868 aa1.64□□□□□ -2.15
RTR1YER139C JNM1P36224 373 aa1.64□□□□□ -2.15
RTR1YER139C VMA13P41807 478 aaKnown RBP1.64□□□□□ -2.15
RTR1YER139C TFG2P41896 400 aaPredicted RBP1.64□□□□□ -2.15
RTR1YER139C TAF11Q04226 346 aa1.64□□□□□ -2.15
RTR1YER139C YOL159C-AQ3E769 90 aa1.64□□□□□ -2.15
RTR1YER139C CDC31P06704 161 aaKnown RBP1.63□□□□□ -2.15
RTR1YER139C FUR1P18562 216 aaKnown RBP1.63□□□□□ -2.15
RTR1YER139C AAT2P23542 418 aaKnown RBP1.63□□□□□ -2.15
RTR1YER139C CLB3P24870 427 aa1.63□□□□□ -2.15
RTR1YER139C DPH2P32461 534 aa1.63□□□□□ -2.15
RTR1YER139C HIR2P32480 875 aa1.63□□□□□ -2.15
RTR1YER139C ECM25P32525 599 aa1.63□□□□□ -2.15
RTR1YER139C CCT2P39076 527 aaKnown RBP1.63□□□□□ -2.15
RTR1YER139C GPD2P41911 440 aaKnown RBP1.63□□□□□ -2.15
RTR1YER139C RPS0BP46654 252 aaKnown RBP1.63□□□□□ -2.15
RTR1YER139C DLD2P46681 530 aaKnown RBP1.63□□□□□ -2.15
RTR1YER139C ECM27P47144 725 aa1.63□□□□□ -2.15
RTR1YER139C PGU1P47180 361 aa1.63□□□□□ -2.15
RTR1YER139C FMS1P50264 508 aa1.63□□□□□ -2.15
RTR1YER139C FRE4P53746 719 aa1.63□□□□□ -2.15
Retrieved 100 of 5,963 RNA–protein pairs in 12.7 ms