RNA–Protein interactions for RNA: YKR098C

UBP11, Transcript of Ubiquitin-specific protease, yeastyeast

Gene UBP11, Length 2,154 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
UBP11YKR098C LGE1Q02796 332 aaKnown RBP2.25□□□□□ -2.05
UBP11YKR098C YPL107WQ02873 248 aa2.25□□□□□ -2.05
UBP11YKR098C SSK1Q07084 712 aa2.25□□□□□ -2.05
UBP11YKR098C APL5Q08951 932 aaKnown RBP2.25□□□□□ -2.05
UBP11YKR098C SMF3Q12078 473 aaPredicted RBP2.25□□□□□ -2.05
UBP11YKR098C VAM3Q12241 283 aa2.25□□□□□ -2.05
UBP11YKR098C CRC1Q12289 327 aa2.25□□□□□ -2.05
UBP11YKR098C YPR089WO13585 888 aa2.24□□□□□ -2.05
UBP11YKR098C BAR1P12630 587 aa2.24□□□□□ -2.05
UBP11YKR098C YAP1P19880 650 aaKnown RBP2.24□□□□□ -2.05
UBP11YKR098C URA4P20051 364 aa2.24□□□□□ -2.05
UBP11YKR098C CLN1P20437 546 aa2.24□□□□□ -2.05
UBP11YKR098C ATP11P32453 318 aa2.24□□□□□ -2.05
UBP11YKR098C TOA1P32773 286 aa2.24□□□□□ -2.05
UBP11YKR098C RPL15BP54780 204 aaPredicted RBP2.24□□□□□ -2.05
UBP11YKR098C ERG13P54839 491 aaKnown RBP2.24□□□□□ -2.05
UBP11YKR098C EKI1Q03764 534 aa2.24□□□□□ -2.05
UBP11YKR098C DIC1Q06143 298 aa2.24□□□□□ -2.05
UBP11YKR098C CUE5Q08412 411 aaKnown RBP2.24□□□□□ -2.05
UBP11YKR098C FRE6Q12473 712 aa2.24□□□□□ -2.05
UBP11YKR098C MES1P00958 751 aaKnown RBP2.23□□□□□ -2.05
UBP11YKR098C YPT1P01123 206 aaKnown RBP2.23□□□□□ -2.05
UBP11YKR098C YER190C-BP0CX94 160 aa2.23□□□□□ -2.05
UBP11YKR098C YEL077W-AP0CX95 160 aa2.23□□□□□ -2.05
UBP11YKR098C YGR296C-BP0CX96 160 aa2.23□□□□□ -2.05
UBP11YKR098C YPL283W-BP0CX97 160 aa2.23□□□□□ -2.05
UBP11YKR098C YPR204C-AP0CX98 160 aa2.23□□□□□ -2.05
UBP11YKR098C SEC63P14906 663 aa2.23□□□□□ -2.05
UBP11YKR098C GID7P25569 745 aa2.23□□□□□ -2.05
UBP11YKR098C KRR1P25586 316 aaPredicted RBP2.23□□□□□ -2.05
UBP11YKR098C BRF1P29056 596 aa2.23□□□□□ -2.05
UBP11YKR098C HIR2P32480 875 aa2.23□□□□□ -2.05
UBP11YKR098C PRP21P32524 280 aaPredicted RBP2.23□□□□□ -2.05
UBP11YKR098C PEX2P32800 271 aa2.23□□□□□ -2.05
UBP11YKR098C VHC1P38329 1120 aa2.23□□□□□ -2.05
UBP11YKR098C RFC3P38629 340 aa2.23□□□□□ -2.05
UBP11YKR098C FLO5P38894 1075 aa2.23□□□□□ -2.05
UBP11YKR098C YJL132WP47014 750 aa2.23□□□□□ -2.05
UBP11YKR098C TOM22P49334 152 aa2.23□□□□□ -2.05
UBP11YKR098C ALT2P52892 507 aa2.23□□□□□ -2.05
UBP11YKR098C RMD9P53140 646 aaKnown RBP2.23□□□□□ -2.05
UBP11YKR098C BTN2P53286 410 aa2.23□□□□□ -2.05
UBP11YKR098C YMR130WQ04223 302 aa2.23□□□□□ -2.05
UBP11YKR098C YLL032CQ07834 825 aaKnown RBP RIP-Chip data2.23□□□□□ -2.05not detected
UBP11YKR098C RKM1Q08961 583 aaPredicted RBP2.23□□□□□ -2.05
UBP11YKR098C SRV2P17555 526 aaKnown RBP2.23□□□□□ -2.05
UBP11YKR098C POT1P27796 417 aaKnown RBP RIP-Chip data2.23□□□□□ -2.05not detected
UBP11YKR098C KRE2P27809 442 aa2.23□□□□□ -2.05
UBP11YKR098C MCM4P30665 933 aaKnown RBP2.23□□□□□ -2.05
UBP11YKR098C SIN4P32259 974 aa2.23□□□□□ -2.05
UBP11YKR098C UTR4P32626 227 aa2.23□□□□□ -2.05
UBP11YKR098C GYP6P32806 458 aa2.23□□□□□ -2.05
UBP11YKR098C PDR3P33200 976 aa2.23□□□□□ -2.05
UBP11YKR098C PHD1P36093 366 aa2.23□□□□□ -2.05
UBP11YKR098C CCT2P39076 527 aaKnown RBP2.23□□□□□ -2.05
UBP11YKR098C TFG2P41896 400 aaPredicted RBP2.23□□□□□ -2.05
UBP11YKR098C FET5P43561 622 aa2.23□□□□□ -2.05
UBP11YKR098C RPS0BP46654 252 aaKnown RBP2.23□□□□□ -2.05
UBP11YKR098C YNL234WP53857 426 aa2.23□□□□□ -2.05
UBP11YKR098C SMA1Q02651 245 aa2.23□□□□□ -2.05
UBP11YKR098C IZH1Q03419 316 aa2.23□□□□□ -2.05
UBP11YKR098C MDM30Q05930 598 aa2.23□□□□□ -2.05
UBP11YKR098C DCS1Q06151 350 aa2.23□□□□□ -2.05
UBP11YKR098C GSH2Q08220 491 aa2.23□□□□□ -2.05
UBP11YKR098C KEL3Q08979 651 aaPredicted RBP2.23□□□□□ -2.05
UBP11YKR098C ATX2Q12067 313 aa2.23□□□□□ -2.05
UBP11YKR098C AEP3Q12089 606 aa2.23□□□□□ -2.05
UBP11YKR098C CFT2Q12102 859 aaPredicted RBP2.23□□□□□ -2.05
UBP11YKR098C MED2Q12124 431 aa2.23□□□□□ -2.05
UBP11YKR098C NFI1Q12216 726 aa2.23□□□□□ -2.05
UBP11YKR098C YNL162W-AQ3E7A8 72 aa2.23□□□□□ -2.05
UBP11YKR098C ARO3P14843 370 aaKnown RBP2.22□□□□□ -2.05
UBP11YKR098C PPZ1P26570 692 aa2.22□□□□□ -2.05
UBP11YKR098C FUN19P28003 413 aaPredicted RBP2.22□□□□□ -2.05
UBP11YKR098C BEM1P29366 551 aa2.22□□□□□ -2.05
UBP11YKR098C RPN2P32565 945 aaKnown RBP2.22□□□□□ -2.05
UBP11YKR098C SWH1P35845 1188 aa2.22□□□□□ -2.05
UBP11YKR098C SPC34P36131 295 aa2.22□□□□□ -2.05
UBP11YKR098C LAS1P36146 502 aaPredicted RBP2.22□□□□□ -2.05
UBP11YKR098C ASC1P38011 319 aaKnown RBP2.22□□□□□ -2.05
UBP11YKR098C YPK3P38070 525 aa2.22□□□□□ -2.05
UBP11YKR098C MMS4P38257 691 aa2.22□□□□□ -2.05
UBP11YKR098C ERG7P38604 731 aa2.22□□□□□ -2.05
UBP11YKR098C VHS2P40463 436 aa2.22□□□□□ -2.05
UBP11YKR098C RTS2P40962 232 aa2.22□□□□□ -2.05
UBP11YKR098C EOS1P53938 366 aa2.22□□□□□ -2.05
UBP11YKR098C MEH1Q02205 184 aa2.22□□□□□ -2.05
UBP11YKR098C PRP42Q03776 544 aaKnown RBP2.22□□□□□ -2.05
UBP11YKR098C SEG1Q04279 960 aa2.22□□□□□ -2.05
UBP11YKR098C ECI1Q05871 280 aa2.22□□□□□ -2.05
UBP11YKR098C COQ11Q05892 277 aa2.22□□□□□ -2.05
UBP11YKR098C PHO92Q06390 306 aa2.22□□□□□ -2.05
UBP11YKR098C DIS3Q08162 1001 aaKnown RBP2.22□□□□□ -2.05
UBP11YKR098C HER1Q12276 1246 aa2.22□□□□□ -2.05
UBP11YKR098C HSP42Q12329 375 aa2.22□□□□□ -2.05
UBP11YKR098C NDJ1Q12366 352 aa2.22□□□□□ -2.05
UBP11YKR098C TY1B-AO13527 1196 aaKnown RBP2.22□□□□□ -2.05
UBP11YKR098C RPL42AP0CX27 106 aaKnown RBP2.22□□□□□ -2.05
UBP11YKR098C RPL42BP0CX28 106 aaKnown RBP2.22□□□□□ -2.05
UBP11YKR098C GLK1P17709 500 aaKnown RBP2.22□□□□□ -2.05
Retrieved 100 of 5,963 RNA–protein pairs in 106.6 ms