RNA–Protein interactions for RNA: YKL054C

DEF1, Transcript of RNAPII degradation factor, yeastyeast

Gene DEF1, Length 2,217 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
DEF1YKL054C KTR1P27810 393 aaKnown RBP8.06□□□□□ -1.12
DEF1YKL054C AIR2Q12476 344 aaKnown RBP8.06□□□□□ -1.12
DEF1YKL054C MID1P41821 548 aa8.05□□□□□ -1.12
DEF1YKL054C HAT1Q12341 374 aa8.05□□□□□ -1.12
DEF1YKL054C PML39Q03760 334 aa8.04□□□□□ -1.12
DEF1YKL054C YML083CQ04526 418 aa8.04□□□□□ -1.12
DEF1YKL054C NCR1Q12200 1170 aa8.04□□□□□ -1.12
DEF1YKL054C ALD2P47771 506 aa8.03□□□□□ -1.12
DEF1YKL054C BIO2P32451 375 aa8.02□□□□□ -1.13
DEF1YKL054C PUP1P25043 261 aa8.02□□□□□ -1.13
DEF1YKL054C KIC1P38692 1080 aa8.02□□□□□ -1.13
DEF1YKL054C IPL1P38991 367 aa8.02□□□□□ -1.13
DEF1YKL054C RRP15Q06511 250 aaPredicted RBP8.02□□□□□ -1.13
DEF1YKL054C ORC6P38826 435 aa8.01□□□□□ -1.13
DEF1YKL054C ALD4P46367 519 aaKnown RBP8.01□□□□□ -1.13
DEF1YKL054C SIS1P25294 352 aaKnown RBP8.01□□□□□ -1.13
DEF1YKL054C YAF9P53930 226 aa8□□□□□ -1.13
DEF1YKL054C CDC73Q06697 393 aa7.99□□□□□ -1.13
DEF1YKL054C YPR204WQ08995 1032 aa7.99□□□□□ -1.13
DEF1YKL054C GAP1P19145 602 aaPredicted RBP7.99□□□□□ -1.13
DEF1YKL054C RTG2P32608 588 aaKnown RBP7.98□□□□□ -1.13
DEF1YKL054C ITT1Q04638 464 aa7.98□□□□□ -1.13
DEF1YKL054C FPR4Q06205 392 aaPredicted RBP7.98□□□□□ -1.13
DEF1YKL054C RPL34BP40525 121 aaKnown RBP7.97□□□□□ -1.13
DEF1YKL054C RTS3P53289 263 aa7.97□□□□□ -1.13
DEF1YKL054C YDR344CQ05510 147 aa7.97□□□□□ -1.13
DEF1YKL054C YDL129WQ07555 291 aa7.97□□□□□ -1.13
DEF1YKL054C MPC54Q08550 464 aa7.97□□□□□ -1.13
DEF1YKL054C CST6P40535 587 aa7.96□□□□□ -1.14
DEF1YKL054C YJR008WP47085 338 aa7.96□□□□□ -1.14
DEF1YKL054C NMD2P38798 1089 aaKnown RBP7.95□□□□□ -1.14
DEF1YKL054C ASF1P32447 279 aa7.94□□□□□ -1.14
DEF1YKL054C PSE1P32337 1089 aaKnown RBP7.93□□□□□ -1.14
DEF1YKL054C ATE1P16639 503 aa7.93□□□□□ -1.14
DEF1YKL054C TPO2P53283 614 aa7.93□□□□□ -1.14
DEF1YKL054C PEX29Q03370 554 aa7.93□□□□□ -1.14
DEF1YKL054C SUP45P12385 437 aaKnown RBP7.92□□□□□ -1.14
DEF1YKL054C RGR1P19263 1082 aa7.92□□□□□ -1.14
DEF1YKL054C SAP30P38429 201 aa7.92□□□□□ -1.14
DEF1YKL054C STM1P39015 273 aaKnown RBP7.92□□□□□ -1.14
DEF1YKL054C TFG1P41895 735 aaPredicted RBP7.92□□□□□ -1.14
DEF1YKL054C DPL1Q05567 589 aa7.92□□□□□ -1.14
DEF1YKL054C YBL036CP38197 257 aa7.91□□□□□ -1.14
DEF1YKL054C MVP1P40959 511 aaKnown RBP7.91□□□□□ -1.14
DEF1YKL054C TYW1Q08960 810 aaKnown RBP7.91□□□□□ -1.14
DEF1YKL054C NNF1P47149 201 aa7.91□□□□□ -1.14
DEF1YKL054C YNL108CP53929 270 aa7.91□□□□□ -1.14
DEF1YKL054C JSN1P47135 1091 aaKnown RBP RIP-Chip data7.89□□□□□ -1.15not detected
DEF1YKL054C MRX10Q05648 414 aa7.88□□□□□ -1.15
DEF1YKL054C UBX5Q06682 500 aa7.88□□□□□ -1.15
DEF1YKL054C MSC6Q08818 692 aaKnown RBP7.88□□□□□ -1.15
DEF1YKL054C NMA111P53920 997 aa7.88□□□□□ -1.15
DEF1YKL054C OSW7P43611 510 aa7.87□□□□□ -1.15
DEF1YKL054C SUB1P54000 292 aaKnown RBP7.87□□□□□ -1.15
DEF1YKL054C MAG2Q06436 670 aaKnown RBP7.87□□□□□ -1.15
DEF1YKL054C CSC1Q06538 782 aa7.87□□□□□ -1.15
DEF1YKL054C SEC20P28791 383 aa7.87□□□□□ -1.15
DEF1YKL054C RNH70P53331 553 aa7.87□□□□□ -1.15
DEF1YKL054C YBL113CQ7M4S9 792 aa7.87□□□□□ -1.15
DEF1YKL054C ENO1P00924 437 aaKnown RBP7.86□□□□□ -1.15
DEF1YKL054C SVF1Q05515 481 aa7.86□□□□□ -1.15
DEF1YKL054C ERP5P38819 212 aa7.85□□□□□ -1.15
DEF1YKL054C ARH1P48360 493 aa7.85□□□□□ -1.15
DEF1YKL054C CSE4P36012 229 aa7.84□□□□□ -1.15
DEF1YKL054C TGL4P36165 910 aa7.84□□□□□ -1.15
DEF1YKL054C VPS72Q03388 795 aa7.84□□□□□ -1.15
DEF1YKL054C STB3Q12427 513 aa7.84□□□□□ -1.15
DEF1YKL054C TRL1P09880 827 aaKnown RBP7.84□□□□□ -1.15
DEF1YKL054C ISU2Q12056 156 aa7.84□□□□□ -1.15
DEF1YKL054C BMT6Q12291 365 aa7.84□□□□□ -1.15
DEF1YKL054C TFB4Q12004 338 aa7.83□□□□□ -1.16
DEF1YKL054C GIN4Q12263 1142 aa7.83□□□□□ -1.16
DEF1YKL054C ENO2P00925 437 aaKnown RBP7.82□□□□□ -1.16
DEF1YKL054C SIS2P36024 562 aa7.82□□□□□ -1.16
DEF1YKL054C YPR109WQ06104 294 aa7.82□□□□□ -1.16
DEF1YKL054C WHI5Q12416 295 aa7.82□□□□□ -1.16
DEF1YKL054C YOL098CQ12496 1037 aa7.82□□□□□ -1.16
DEF1YKL054C RPP1BP10622 106 aaKnown RBP7.82□□□□□ -1.16
DEF1YKL054C TEA1P47988 759 aa7.82□□□□□ -1.16
DEF1YKL054C TUM1Q08686 304 aaKnown RBP7.82□□□□□ -1.16
DEF1YKL054C TOM20P35180 183 aa7.81□□□□□ -1.16
DEF1YKL054C YJL171CP46992 396 aa7.81□□□□□ -1.16
DEF1YKL054C POL32P47110 350 aa7.81□□□□□ -1.16
DEF1YKL054C HAP5Q02516 242 aa7.81□□□□□ -1.16
DEF1YKL054C BUD21Q08492 214 aaPredicted RBP7.81□□□□□ -1.16
DEF1YKL054C RAD59Q12223 238 aa7.8□□□□□ -1.16
DEF1YKL054C YDJ1P25491 409 aaKnown RBP7.8□□□□□ -1.16
DEF1YKL054C RIM21P48565 533 aa7.8□□□□□ -1.16
DEF1YKL054C MAK16P10962 306 aaPredicted RBP7.79□□□□□ -1.16
DEF1YKL054C PDR1P12383 1068 aa7.79□□□□□ -1.16
DEF1YKL054C PEP12P32854 288 aa7.79□□□□□ -1.16
DEF1YKL054C MDJ2P42834 146 aa7.79□□□□□ -1.16
DEF1YKL054C YRR1Q12172 810 aa7.79□□□□□ -1.16
DEF1YKL054C SEC8P32855 1065 aa7.78□□□□□ -1.16
DEF1YKL054C TPS3P38426 1054 aaKnown RBP7.78□□□□□ -1.16
DEF1YKL054C YHL050CP38721 697 aa7.78□□□□□ -1.16
DEF1YKL054C YHR219WP38900 624 aa7.78□□□□□ -1.16
DEF1YKL054C YEL077CQ3E7X8 1277 aa7.78□□□□□ -1.16
DEF1YKL054C PEX21P50091 288 aa7.76□□□□□ -1.17
DEF1YKL054C RAM1P22007 431 aa7.76□□□□□ -1.17
Retrieved 100 of 5,963 RNA–protein pairs in 10.9 ms