RNA–Protein interactions for RNA: LSR1

LSR1, Transcript of U2 spliceosomal RNA (U2 snRNA), component of the spliceosome, yeastyeast

Gene LSR1, Length 1,175 nt, Biotype snRNA.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
LSR1LSR1 YML133CQ03099 1374 aa11.21□□□□□ -0.61
LSR1LSR1 YLL067CQ07888 1374 aa11.21□□□□□ -0.61
LSR1LSR1 YLL066CQ99208 1374 aa11.21□□□□□ -0.61
LSR1LSR1 URN1Q06525 465 aaKnown RBP11.21□□□□□ -0.61
LSR1LSR1 HAA1Q12753 694 aaKnown RBP11.21□□□□□ -0.61
LSR1LSR1 SNF2P22082 1703 aa11.21□□□□□ -0.62
LSR1LSR1 RPP0P05317 312 aaKnown RBP11.2□□□□□ -0.62
LSR1LSR1 TFA1P36100 482 aa11.2□□□□□ -0.62
LSR1LSR1 IOC4Q04213 475 aa11.2□□□□□ -0.62
LSR1LSR1 YEF3P16521 1044 aaKnown RBP11.19□□□□□ -0.62
LSR1LSR1 TSR3Q12094 313 aaKnown RBP11.18□□□□□ -0.62
LSR1LSR1 CHZ1P40019 153 aaPredicted RBP11.17□□□□□ -0.62
LSR1LSR1 CDC45Q08032 650 aa11.17□□□□□ -0.62
LSR1LSR1 TRK1P12685 1235 aa11.16□□□□□ -0.62
LSR1LSR1 VPS27P40343 622 aaKnown RBP11.16□□□□□ -0.62
LSR1LSR1 CAB1Q04430 367 aa11.16□□□□□ -0.62
LSR1LSR1 FUN12P39730 1002 aaKnown RBP11.14□□□□□ -0.63
LSR1LSR1 RVB2Q12464 471 aaKnown RBP11.14□□□□□ -0.63
LSR1LSR1 YDL144CQ07589 356 aa11.11□□□□□ -0.63
LSR1LSR1 DNF3Q12674 1656 aa11.11□□□□□ -0.63
LSR1LSR1 SUI2P20459 304 aaKnown RBP11.07□□□□□ -0.64
LSR1LSR1 NAP1P25293 417 aaKnown RBP11.06□□□□□ -0.64
LSR1LSR1 RRP46P53256 223 aaPredicted RBP11.06□□□□□ -0.64
LSR1LSR1 PSK1P31374 1356 aa11.05□□□□□ -0.64
LSR1LSR1 KRE5P22023 1365 aa11.04□□□□□ -0.64
LSR1LSR1 MPP10P47083 593 aaKnown RBP11.04□□□□□ -0.64
LSR1LSR1 YRB30P53107 440 aaPredicted RBP11.03□□□□□ -0.64
LSR1LSR1 TY1B-NL2Q99337 1749 aaKnown RBP11.02□□□□□ -0.65
LSR1LSR1 PPH3P32345 308 aa11□□□□□ -0.65
LSR1LSR1 USO1P25386 1790 aa11□□□□□ -0.65
LSR1LSR1 RPC31P17890 251 aa10.98□□□□□ -0.65
LSR1LSR1 RCM1P53972 490 aa10.98□□□□□ -0.65
LSR1LSR1 NAB6Q03735 1134 aaKnown RBP RIP-Chip data10.98□□□□□ -0.65not detected
LSR1LSR1 MRX12P47084 519 aa10.97□□□□□ -0.65
LSR1LSR1 AUS1Q08409 1394 aa10.97□□□□□ -0.65
LSR1LSR1 TAP42Q04372 366 aa10.96□□□□□ -0.65
LSR1LSR1 RTR1P40084 226 aaPredicted RBP10.95□□□□□ -0.66
LSR1LSR1 RIA1P53893 1110 aa10.95□□□□□ -0.66
LSR1LSR1 SAP155P43612 1002 aa10.94□□□□□ -0.66
LSR1LSR1 THI22Q06490 572 aa10.93□□□□□ -0.66
LSR1LSR1 OPY1P38271 328 aa10.92□□□□□ -0.66
LSR1LSR1 FPR3P38911 411 aaKnown RBP10.92□□□□□ -0.66
LSR1LSR1 HIM1Q06674 414 aa10.92□□□□□ -0.66
LSR1LSR1 KAR2P16474 682 aaKnown RBP10.91□□□□□ -0.66
LSR1LSR1 HEF3P53978 1044 aaKnown RBP10.91□□□□□ -0.66
LSR1LSR1 PRD1P25375 712 aa10.9□□□□□ -0.66
LSR1LSR1 IME2P32581 645 aa10.9□□□□□ -0.66
LSR1LSR1 PDI1P17967 522 aaKnown RBP10.89□□□□□ -0.67
LSR1LSR1 CPS1P27614 576 aa10.89□□□□□ -0.67
LSR1LSR1 APC1P53886 1748 aa10.89□□□□□ -0.67
LSR1LSR1 TPD3P31383 635 aa10.88□□□□□ -0.67
LSR1LSR1 SIR4P11978 1358 aa10.88□□□□□ -0.67
LSR1LSR1 LEU2P04173 364 aaPredicted RBP10.87□□□□□ -0.67
LSR1LSR1 YIL092WP40497 633 aa10.87□□□□□ -0.67
LSR1LSR1 ABP1P15891 592 aaKnown RBP10.86□□□□□ -0.67
LSR1LSR1 YNR029CP53729 429 aaKnown RBP10.86□□□□□ -0.67
LSR1LSR1 GRX4P32642 244 aa10.85□□□□□ -0.67
LSR1LSR1 MAK10Q02197 733 aa10.85□□□□□ -0.67
LSR1LSR1 YIR014WP40570 242 aa10.84□□□□□ -0.67
LSR1LSR1 MTR4P47047 1073 aaKnown RBP10.84□□□□□ -0.67
LSR1LSR1 RTT109Q07794 436 aa10.84□□□□□ -0.67
LSR1LSR1 YIL177CP40434 1758 aa10.84□□□□□ -0.67
LSR1LSR1 YJL225CP40889 1758 aa10.84□□□□□ -0.67
LSR1LSR1 TY4B-HP0C2J7 1802 aa10.84□□□□□ -0.67
LSR1LSR1 TY4B-JP47024 1803 aa10.84□□□□□ -0.67
LSR1LSR1 ADE6P38972 1358 aaKnown RBP10.83□□□□□ -0.68
LSR1LSR1 RAD2P07276 1031 aa10.83□□□□□ -0.68
LSR1LSR1 RPO41P13433 1351 aaKnown RBP10.82□□□□□ -0.68
LSR1LSR1 PRP43P53131 767 aaKnown RBP10.82□□□□□ -0.68
LSR1LSR1 PAP2P53632 584 aaKnown RBP10.82□□□□□ -0.68
LSR1LSR1 RRP5Q05022 1729 aaKnown RBP10.81□□□□□ -0.68
LSR1LSR1 YRF1-4O13559 1382 aa10.81□□□□□ -0.68
LSR1LSR1 DAL5P15365 543 aa10.81□□□□□ -0.68
LSR1LSR1 RTF1P53064 558 aa10.81□□□□□ -0.68
LSR1LSR1 BUD27P43573 796 aaKnown RBP RIP-Chip data10.8□□□□□ -0.68not detected
LSR1LSR1 POL32P47110 350 aa10.8□□□□□ -0.68
LSR1LSR1 YRF1-2P40105 1681 aa10.79□□□□□ -0.68
LSR1LSR1 RPL17AP05740 184 aaKnown RBP10.79□□□□□ -0.68
LSR1LSR1 CSE4P36012 229 aa10.79□□□□□ -0.68
LSR1LSR1 RPL17BP46990 184 aaKnown RBP10.79□□□□□ -0.68
LSR1LSR1 YFR016CP43597 1233 aaKnown RBP10.78□□□□□ -0.68
LSR1LSR1 RPS24AP0CX31 135 aaKnown RBP10.76□□□□□ -0.69
LSR1LSR1 RPS24BP0CX32 135 aaKnown RBP10.76□□□□□ -0.69
LSR1LSR1 GAS4Q08271 471 aa10.74□□□□□ -0.69
LSR1LSR1 MAK21Q12176 1025 aaKnown RBP10.72□□□□□ -0.69
LSR1LSR1 MRPL32P25348 183 aa10.71□□□□□ -0.69
LSR1LSR1 AKL1P38080 1108 aaKnown RBP10.71□□□□□ -0.69
LSR1LSR1 URB1P34241 1764 aaKnown RBP10.7□□□□□ -0.7
LSR1LSR1 DPS1P04802 557 aaKnown RBP10.7□□□□□ -0.7
LSR1LSR1 CLC1P17891 233 aa10.7□□□□□ -0.7
LSR1LSR1 BUB1P41695 1021 aaKnown RBP RIP-Chip data10.7□□□□□ -0.7not detected
LSR1LSR1 DSD1P53095 428 aa10.7□□□□□ -0.7
LSR1LSR1 PUF6Q04373 656 aaKnown RBP10.7□□□□□ -0.7
LSR1LSR1 REB1P21538 810 aa10.69□□□□□ -0.7
LSR1LSR1 FKS3Q04952 1785 aa10.69□□□□□ -0.7
LSR1LSR1 CAB3P36076 571 aa10.68□□□□□ -0.7
LSR1LSR1 EAF7P53911 425 aaKnown RBP10.68□□□□□ -0.7
LSR1LSR1 YNL050CP53952 270 aa10.67□□□□□ -0.7
LSR1LSR1 TRP5P00931 707 aaKnown RBP10.66□□□□□ -0.7
LSR1LSR1 PCT1P13259 424 aa10.66□□□□□ -0.7
Retrieved 100 of 5,963 RNA–protein pairs in 25.8 ms