RNA–Protein interactions for RNA: ENST00000621325.1

LIME1-210, Transcript of Lck interacting transmembrane adaptor 1, humanhuman

TSL 2

Gene LIME1, Length 2,410 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1-210ENST00000621325 PLEKHD1A6NEE1 506 aa30.76■■■□□ 2.52
LIME1-210ENST00000621325 DNMT1P26358 1616 aaKnown RBP30.76■■■□□ 2.52
LIME1-210ENST00000621325 TIMELESSQ9UNS1 1208 aa30.73■■■□□ 2.51
LIME1-210ENST00000621325 CAMSAP2Q08AD1 1489 aa30.72■■■□□ 2.51
LIME1-210ENST00000621325 SHROOM2Q13796 1616 aa30.72■■■□□ 2.51
LIME1-210ENST00000621325 ZNF777Q9ULD5 760 aaPredicted RBP30.72■■■□□ 2.51
LIME1-210ENST00000621325 TRIM52Q96A61 297 aa30.71■■■□□ 2.51
LIME1-210ENST00000621325 ITSN2Q9NZM3 1697 aa30.7■■■□□ 2.51
LIME1-210ENST00000621325 ROCK1Q13464 1354 aa30.69■■■□□ 2.5
LIME1-210ENST00000621325 ERCC6L2Q5T890 1561 aa30.69■■■□□ 2.5
LIME1-210ENST00000621325 DENND4BO75064 1496 aaPredicted RBP30.68■■■□□ 2.5
LIME1-210ENST00000621325 PPP1R15AO75807 674 aaPredicted RBP30.66■■■□□ 2.5
LIME1-210ENST00000621325 ABCC10Q5T3U5 1492 aa30.65■■■□□ 2.5
LIME1-210ENST00000621325 TONSLQ96HA7 1378 aa30.62■■■□□ 2.49
LIME1-210ENST00000621325 CDC42BPAQ5VT25 1732 aa30.6■■■□□ 2.49
LIME1-210ENST00000621325 MPHOSPH9Q99550 1183 aa30.59■■■□□ 2.49
LIME1-210ENST00000621325 CLASP1Q7Z460 1538 aa30.53■■■□□ 2.48
LIME1-210ENST00000621325 FOXD1Q16676 465 aa30.53■■■□□ 2.48
LIME1-210ENST00000621325 NCOA1Q15788 1441 aa30.53■■■□□ 2.48
LIME1-210ENST00000621325 CROCC2H7BZ55 1655 aa30.48■■■□□ 2.47
LIME1-210ENST00000621325 YTHDC1Q96MU7 727 aaKnown RBP30.47■■■□□ 2.47
LIME1-210ENST00000621325 KDM5BQ9UGL1 1544 aa30.47■■■□□ 2.47
LIME1-210ENST00000621325 ACIN1Q9UKV3 1341 aaKnown RBP30.47■■■□□ 2.47
LIME1-210ENST00000621325 ADGBQ8N7X0 1667 aa30.46■■■□□ 2.47
LIME1-210ENST00000621325 ADGRL2O95490 1459 aa30.46■■■□□ 2.47
LIME1-210ENST00000621325 ABCC2Q92887 1545 aa30.46■■■□□ 2.47
LIME1-210ENST00000621325 HIRIP3Q9BW71 556 aaPredicted RBP30.44■■■□□ 2.46
LIME1-210ENST00000621325 ANKRD30AQ9BXX3 1397 aa30.41■■■□□ 2.46
LIME1-210ENST00000621325 CENPBP07199 599 aaPredicted RBP30.41■■■□□ 2.46
LIME1-210ENST00000621325 HNRNPMP52272 730 aaKnown RBP eCLIP30.41■■■□□ 2.46
LIME1-210ENST00000621325 SLC4A1APQ9BWU0 796 aaKnown RBP30.4■■■□□ 2.46
LIME1-210ENST00000621325 C9orf84Q5VXU9 1444 aa30.38■■■□□ 2.45
LIME1-210ENST00000621325 ANKRD30BQ9BXX2 1392 aa30.37■■■□□ 2.45
LIME1-210ENST00000621325 CDC42BPBQ9Y5S2 1711 aa30.37■■■□□ 2.45
LIME1-210ENST00000621325 PZPP20742 1482 aa30.35■■■□□ 2.45
LIME1-210ENST00000621325 PREX2Q70Z35 1606 aa30.35■■■□□ 2.45
LIME1-210ENST00000621325 TTC37Q6PGP7 1564 aa30.35■■■□□ 2.45
LIME1-210ENST00000621325 SHANK2Q9UPX8 1470 aa30.35■■■□□ 2.45
LIME1-210ENST00000621325 MBD5Q9P267 1494 aa30.34■■■□□ 2.45
LIME1-210ENST00000621325 SAMD9LQ8IVG5 1584 aa30.34■■■□□ 2.45
LIME1-210ENST00000621325 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP30.33■■■□□ 2.45
LIME1-210ENST00000621325 ANKRD50Q9ULJ7 1429 aa30.33■■■□□ 2.45
LIME1-210ENST00000621325 TSPY4P0CV99 314 aa30.32■■■□□ 2.44
LIME1-210ENST00000621325 TSPY10P0CW01 314 aa30.32■■■□□ 2.44
LIME1-210ENST00000621325 KCNH8Q96L42 1107 aa30.32■■■□□ 2.44
LIME1-210ENST00000621325 DDX10Q13206 875 aaKnown RBP30.3■■■□□ 2.44
LIME1-210ENST00000621325 L3MBTL2Q969R5 705 aa30.29■■■□□ 2.44
LIME1-210ENST00000621325 ARHGEF5Q12774 1597 aa30.29■■■□□ 2.44
LIME1-210ENST00000621325 ZCCHC11Q5TAX3 1644 aaKnown RBP30.26■■■□□ 2.44
LIME1-210ENST00000621325 UHRF1BP1LA0JNW5 1464 aa30.26■■■□□ 2.43
LIME1-210ENST00000621325 RPRD2Q5VT52 1461 aaKnown RBP30.25■■■□□ 2.43
LIME1-210ENST00000621325 ARHGAP5Q13017 1502 aa30.25■■■□□ 2.43
LIME1-210ENST00000621325 CCDC141Q6ZP82 1450 aa30.24■■■□□ 2.43
LIME1-210ENST00000621325 KIF15Q9NS87 1388 aa30.23■■■□□ 2.43
LIME1-210ENST00000621325 SYCP2Q9BX26 1530 aa30.21■■■□□ 2.43
LIME1-210ENST00000621325 PKD2Q13563 968 aa30.2■■■□□ 2.42
LIME1-210ENST00000621325 KIAA1107Q9UPP5 1409 aa30.18■■■□□ 2.42
LIME1-210ENST00000621325 NUP155O75694 1391 aa30.17■■■□□ 2.42
LIME1-210ENST00000621325 TEX14Q8IWB6 1497 aa30.17■■■□□ 2.42
LIME1-210ENST00000621325 MYO5CQ9NQX4 1742 aa30.17■■■□□ 2.42
LIME1-210ENST00000621325 RSPH4AQ5TD94 716 aa30.15■■■□□ 2.42
LIME1-210ENST00000621325 GTF3C3Q9Y5Q9 886 aa30.13■■■□□ 2.41
LIME1-210ENST00000621325 NBPF8Q3BBV2 869 aa30.11■■■□□ 2.41
LIME1-210ENST00000621325 PLCH2O75038 1416 aa30.1■■■□□ 2.41
LIME1-210ENST00000621325 ARHGEF12Q9NZN5 1544 aa30.09■■■□□ 2.41
LIME1-210ENST00000621325 HSPA5P11021 654 aaKnown RBP30.08■■■□□ 2.41
LIME1-210ENST00000621325 KDM5DQ9BY66 1539 aa30.05■■■□□ 2.4
LIME1-210ENST00000621325 PLEKHH2Q8IVE3 1493 aa30.05■■■□□ 2.4
LIME1-210ENST00000621325 MAST1Q9Y2H9 1570 aa30.03■■■□□ 2.4
LIME1-210ENST00000621325 EFCAB2Q5VUJ9 269 aa30.03■■■□□ 2.4
LIME1-210ENST00000621325 EIF4G2P78344 907 aaKnown RBP eCLIP30.01■■■□□ 2.39
LIME1-210ENST00000621325 OSCARQ8IYS5 282 aa29.98■■■□□ 2.39
LIME1-210ENST00000621325 WDR7Q9Y4E6 1490 aa29.96■■■□□ 2.39
LIME1-210ENST00000621325 ABCC1P33527 1531 aa29.95■■■□□ 2.38
LIME1-210ENST00000621325 TRAPPC8Q9Y2L5 1435 aa29.95■■■□□ 2.38
LIME1-210ENST00000621325 WASHC2AQ641Q2 1341 aa29.95■■■□□ 2.38
LIME1-210ENST00000621325 FAM135AQ9P2D6 1515 aa29.94■■■□□ 2.38
LIME1-210ENST00000621325 PLXNC1O60486 1568 aa29.93■■■□□ 2.38
LIME1-210ENST00000621325 GRWD1Q9BQ67 446 aaKnown RBP eCLIP29.91■■■□□ 2.38
LIME1-210ENST00000621325 ZNF326Q5BKZ1 582 aaKnown RBP29.88■■■□□ 2.37
LIME1-210ENST00000621325 ANP32CO43423 234 aa29.87■■■□□ 2.37
LIME1-210ENST00000621325 C11orf95C9JLR9 678 aaPredicted RBP29.87■■■□□ 2.37
LIME1-210ENST00000621325 UNC13BO14795 1591 aa29.86■■■□□ 2.37
LIME1-210ENST00000621325 AFAP1Q8N556 730 aa29.86■■■□□ 2.37
LIME1-210ENST00000621325 BCL11AQ9H165 835 aa29.86■■■□□ 2.37
LIME1-210ENST00000621325 DUOX2Q9NRD8 1548 aa29.85■■■□□ 2.37
LIME1-210ENST00000621325 ASXL2Q76L83 1435 aa29.84■■■□□ 2.37
LIME1-210ENST00000621325 ARAP3Q8WWN8 1544 aa29.84■■■□□ 2.37
LIME1-210ENST00000621325 SPATA31E1Q6ZUB1 1445 aa29.83■■■□□ 2.37
LIME1-210ENST00000621325 SPAG9O60271 1321 aaKnown RBP29.8■■■□□ 2.36
LIME1-210ENST00000621325 ABCA9Q8IUA7 1624 aa29.8■■■□□ 2.36
LIME1-210ENST00000621325 ERBINQ96RT1 1412 aa29.79■■■□□ 2.36
LIME1-210ENST00000621325 FANCAO15360 1455 aa29.79■■■□□ 2.36
LIME1-210ENST00000621325 CCDC7Q96M83 1385 aa29.76■■■□□ 2.36
LIME1-210ENST00000621325 PLA2R1Q13018 1463 aa29.75■■■□□ 2.35
LIME1-210ENST00000621325 CCER2I3L3R5 266 aa29.75■■■□□ 2.35
LIME1-210ENST00000621325 IQGAP3Q86VI3 1631 aa29.75■■■□□ 2.35
LIME1-210ENST00000621325 KDM2AQ9Y2K7 1162 aa29.75■■■□□ 2.35
LIME1-210ENST00000621325 UHRF1BP1Q6BDS2 1440 aa29.74■■■□□ 2.35
LIME1-210ENST00000621325 ZFYVE16Q7Z3T8 1539 aa29.73■■■□□ 2.35
Retrieved 100 of 20,778 RNA–protein pairs in 57 ms