RNA–Protein interactions for RNA: ENST00000621271.4

CLTCL1-211, Transcript of clathrin heavy chain like 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CLTCL1, Length 5,313 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLTCL1-211ENST00000621271 TDRD9Q8NDG6 1382 aaKnown RBP12.68□□□□□ -0.38
CLTCL1-211ENST00000621271 TNIKQ9UKE5 1360 aa12.67□□□□□ -0.38
CLTCL1-211ENST00000621271 CC2D1BQ5T0F9 858 aaKnown RBP12.67□□□□□ -0.38
CLTCL1-211ENST00000621271 FGD1P98174 961 aa12.66□□□□□ -0.38
CLTCL1-211ENST00000621271 MRC2Q9UBG0 1479 aa12.66□□□□□ -0.38
CLTCL1-211ENST00000621271 CYB5RLQ6IPT4 315 aa12.66□□□□□ -0.38
CLTCL1-211ENST00000621271 MORC1Q86VD1 984 aa12.65□□□□□ -0.38
CLTCL1-211ENST00000621271 ZNF330Q9Y3S2 320 aaPredicted RBP12.65□□□□□ -0.38
CLTCL1-211ENST00000621271 MS4A1P11836 297 aa12.64□□□□□ -0.39
CLTCL1-211ENST00000621271 SENP3-EIF4A1A0A087X0R7 540 aa12.64□□□□□ -0.39
CLTCL1-211ENST00000621271 KIF3BO15066 747 aa12.64□□□□□ -0.39
CLTCL1-211ENST00000621271 BECN1Q14457 450 aa12.64□□□□□ -0.39
CLTCL1-211ENST00000621271 TAOK2Q9UL54 1235 aa12.64□□□□□ -0.39
CLTCL1-211ENST00000621271 ISY1Q9ULR0 285 aaKnown RBP12.64□□□□□ -0.39
CLTCL1-211ENST00000621271 FRAT1Q92837 279 aaPredicted RBP12.64□□□□□ -0.39
CLTCL1-211ENST00000621271 KCNJ4P48050 445 aa12.63□□□□□ -0.39
CLTCL1-211ENST00000621271 GOLGA6L22H0YM25 854 aa12.62□□□□□ -0.39
CLTCL1-211ENST00000621271 WASHC2CQ9Y4E1 1318 aa12.62□□□□□ -0.39
CLTCL1-211ENST00000621271 LAMC3Q9Y6N6 1575 aa12.61□□□□□ -0.39
CLTCL1-211ENST00000621271 PKD2Q13563 968 aa12.6□□□□□ -0.39
CLTCL1-211ENST00000621271 NESP48681 1621 aa12.59□□□□□ -0.39
CLTCL1-211ENST00000621271 NGDNQ8NEJ9 315 aaKnown RBP12.59□□□□□ -0.39
CLTCL1-211ENST00000621271 NAP1L2Q9ULW6 460 aaPredicted RBP12.59□□□□□ -0.39
CLTCL1-211ENST00000621271 SPAG9O60271 1321 aaKnown RBP12.59□□□□□ -0.39
CLTCL1-211ENST00000621271 CFTRP13569 1480 aa12.58□□□□□ -0.39
CLTCL1-211ENST00000621271 SIN3AQ96ST3 1273 aa12.58□□□□□ -0.4
CLTCL1-211ENST00000621271 CHMP4AQ9BY43 222 aa12.56□□□□□ -0.4
CLTCL1-211ENST00000621271 JPH4Q96JJ6 628 aa12.56□□□□□ -0.4
CLTCL1-211ENST00000621271 DDRGK1Q96HY6 314 aa12.56□□□□□ -0.4
CLTCL1-211ENST00000621271 G3V3G9 751 aa12.55□□□□□ -0.4
CLTCL1-211ENST00000621271 DCAF8Q5TAQ9 597 aa12.55□□□□□ -0.4
CLTCL1-211ENST00000621271 ANKRD30AQ9BXX3 1397 aa12.55□□□□□ -0.4
CLTCL1-211ENST00000621271 NUP155O75694 1391 aa12.54□□□□□ -0.4
CLTCL1-211ENST00000621271 RSPH4AQ5TD94 716 aa12.54□□□□□ -0.4
CLTCL1-211ENST00000621271 TPRNQ4KMQ1 711 aa12.53□□□□□ -0.4
CLTCL1-211ENST00000621271 CLSTN1O94985 981 aa12.53□□□□□ -0.4
CLTCL1-211ENST00000621271 PPP4R2Q9NY27 417 aa12.53□□□□□ -0.4
CLTCL1-211ENST00000621271 FMN1Q68DA7 1419 aa12.53□□□□□ -0.4
CLTCL1-211ENST00000621271 ARHGAP35Q9NRY4 1499 aa12.53□□□□□ -0.4
CLTCL1-211ENST00000621271 CALD1Q05682 793 aaKnown RBP12.52□□□□□ -0.4
CLTCL1-211ENST00000621271 IFT140Q96RY7 1462 aa12.52□□□□□ -0.4
CLTCL1-211ENST00000621271 TERF2IPQ9NYB0 399 aa12.52□□□□□ -0.4
CLTCL1-211ENST00000621271 HNRNPMP52272 730 aaKnown RBP eCLIP12.52□□□□□ -0.41
CLTCL1-211ENST00000621271 GTF2E1P29083 439 aaPredicted RBP12.52□□□□□ -0.41
CLTCL1-211ENST00000621271 MEX3CQ5U5Q3 659 aaKnown RBP12.52□□□□□ -0.41
CLTCL1-211ENST00000621271 NUTM2DQ5VT03 806 aaPredicted RBP12.51□□□□□ -0.41
CLTCL1-211ENST00000621271 AMPHP49418 695 aa12.5□□□□□ -0.41
CLTCL1-211ENST00000621271 NUTM2FA1L443 756 aa12.5□□□□□ -0.41
CLTCL1-211ENST00000621271 U2AF1L5P0DN76 240 aaPredicted RBP12.5□□□□□ -0.41
CLTCL1-211ENST00000621271 U2AF1Q01081 240 aaKnown RBP eCLIP12.5□□□□□ -0.41
CLTCL1-211ENST00000621271 NOP58Q9Y2X3 529 aaKnown RBP12.5□□□□□ -0.41
CLTCL1-211ENST00000621271 EIF3AQ14152 1382 aaKnown RBP12.5□□□□□ -0.41
CLTCL1-211ENST00000621271 TAF7LQ5H9L4 462 aa12.49□□□□□ -0.41
CLTCL1-211ENST00000621271 EVA1CP58658 441 aa12.48□□□□□ -0.41
CLTCL1-211ENST00000621271 RBM19Q9Y4C8 960 aaKnown RBP12.48□□□□□ -0.41
CLTCL1-211ENST00000621271 PEG3Q9GZU2 1588 aa12.48□□□□□ -0.41
CLTCL1-211ENST00000621271 GORABQ5T7V8 394 aa12.47□□□□□ -0.41
CLTCL1-211ENST00000621271 MSH5O43196 834 aa12.47□□□□□ -0.41
CLTCL1-211ENST00000621271 RGS3P49796 1198 aa12.47□□□□□ -0.41
CLTCL1-211ENST00000621271 STK31Q9BXU1 1019 aa12.47□□□□□ -0.41
CLTCL1-211ENST00000621271 ROCK2O75116 1388 aaKnown RBP12.47□□□□□ -0.41
CLTCL1-211ENST00000621271 LTV1Q96GA3 475 aaPredicted RBP12.47□□□□□ -0.41
CLTCL1-211ENST00000621271 NCBP3Q53F19 620 aaKnown RBP12.46□□□□□ -0.41
CLTCL1-211ENST00000621271 IPO8O15397 1037 aaKnown RBP12.46□□□□□ -0.41
CLTCL1-211ENST00000621271 CHMP3Q9Y3E7 222 aa12.46□□□□□ -0.41
CLTCL1-211ENST00000621271 FAM69CQ0P6D2 419 aa12.46□□□□□ -0.42
CLTCL1-211ENST00000621271 FOXD1Q16676 465 aa12.46□□□□□ -0.42
CLTCL1-211ENST00000621271 HDAC5Q9UQL6 1122 aa12.45□□□□□ -0.42
CLTCL1-211ENST00000621271 MCCP23508 829 aa12.45□□□□□ -0.42
CLTCL1-211ENST00000621271 PTPRGP23470 1445 aa12.45□□□□□ -0.42
CLTCL1-211ENST00000621271 TIMELESSQ9UNS1 1208 aa12.45□□□□□ -0.42
CLTCL1-211ENST00000621271 PTMAP06454 111 aaKnown RBP12.44□□□□□ -0.42
CLTCL1-211ENST00000621271 PHF23Q9BUL5 403 aaPredicted RBP12.44□□□□□ -0.42
CLTCL1-211ENST00000621271 CCER2I3L3R5 266 aa12.44□□□□□ -0.42
CLTCL1-211ENST00000621271 GOLGA6L4A6NEF3 574 aa12.43□□□□□ -0.42
CLTCL1-211ENST00000621271 KTN1Q86UP2 1357 aaKnown RBP12.43□□□□□ -0.42
CLTCL1-211ENST00000621271 TRIM44Q96DX7 344 aaPredicted RBP12.43□□□□□ -0.42
CLTCL1-211ENST00000621271 GNL2Q13823 731 aaKnown RBP12.43□□□□□ -0.42
CLTCL1-211ENST00000621271 MPHOSPH9Q99550 1183 aa12.42□□□□□ -0.42
CLTCL1-211ENST00000621271 TSHZ2Q9NRE2 1034 aa12.42□□□□□ -0.42
CLTCL1-211ENST00000621271 FRAT2O75474 233 aaPredicted RBP12.42□□□□□ -0.42
CLTCL1-211ENST00000621271 APBB1O00213 710 aa12.41□□□□□ -0.42
CLTCL1-211ENST00000621271 SETD5Q9C0A6 1442 aa12.41□□□□□ -0.42
CLTCL1-211ENST00000621271 GAPVD1Q14C86 1478 aa12.41□□□□□ -0.42
CLTCL1-211ENST00000621271 KIAA1211Q6ZU35 1233 aa12.41□□□□□ -0.42
CLTCL1-211ENST00000621271 DCAF8L1A6NGE4 600 aa12.41□□□□□ -0.42
CLTCL1-211ENST00000621271 CCDC18Q5T9S5 1454 aa12.41□□□□□ -0.42
CLTCL1-211ENST00000621271 HSP90AB1P08238 724 aaKnown RBP12.41□□□□□ -0.42
CLTCL1-211ENST00000621271 CFAP44Q96MT7 982 aa12.41□□□□□ -0.42
CLTCL1-211ENST00000621271 SUGP2Q8IX01 1082 aaKnown RBP eCLIP12.41□□□□□ -0.42
CLTCL1-211ENST00000621271 GRIN2BQ13224 1484 aa12.4□□□□□ -0.42
CLTCL1-211ENST00000621271 FGD5Q6ZNL6 1462 aa12.4□□□□□ -0.42
CLTCL1-211ENST00000621271 DEKP35659 375 aaKnown RBP12.4□□□□□ -0.42
CLTCL1-211ENST00000621271 ERICH6BQ5W0A0 696 aa12.4□□□□□ -0.42
CLTCL1-211ENST00000621271 GOLGA6L6A8MZA4 724 aa12.4□□□□□ -0.42
CLTCL1-211ENST00000621271 VGFO15240 615 aaPredicted RBP12.39□□□□□ -0.43
CLTCL1-211ENST00000621271 B4GALNT3Q6L9W6 998 aa12.38□□□□□ -0.43
CLTCL1-211ENST00000621271 TRAK1Q9UPV9 953 aa12.38□□□□□ -0.43
CLTCL1-211ENST00000621271 PLCB2Q00722 1185 aa12.38□□□□□ -0.43
CLTCL1-211ENST00000621271 TOPBP1Q92547 1522 aa12.38□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 15.6 ms