RNA–Protein interactions for RNA: ENST00000618395.4

COL5A1-208, Transcript of collagen type V alpha 1 chain, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene COL5A1, Length 8,437 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A1-208ENST00000618395 CFAP53Q96M91 514 aa18.78■□□□□ 0.6
COL5A1-208ENST00000618395 H0YHG0 523 aa18.78■□□□□ 0.6
COL5A1-208ENST00000618395 CHGAP10645 457 aaKnown RBP18.78■□□□□ 0.6
COL5A1-208ENST00000618395 ARGLU1Q9NWB6 273 aaPredicted RBP18.76■□□□□ 0.59
COL5A1-208ENST00000618395 NCBP3Q53F19 620 aaKnown RBP18.75■□□□□ 0.59
COL5A1-208ENST00000618395 CLSTN1O94985 981 aa18.75■□□□□ 0.59
COL5A1-208ENST00000618395 ACBD3Q9H3P7 528 aa18.74■□□□□ 0.59
COL5A1-208ENST00000618395 ZNF592Q92610 1267 aa18.73■□□□□ 0.59
COL5A1-208ENST00000618395 KIF16BQ96L93 1317 aa18.73■□□□□ 0.59
COL5A1-208ENST00000618395 OS9Q13438 667 aaPredicted RBP18.72■□□□□ 0.59
COL5A1-208ENST00000618395 AK7Q96M32 723 aa18.72■□□□□ 0.59
COL5A1-208ENST00000618395 MEX3CQ5U5Q3 659 aaKnown RBP18.72■□□□□ 0.59
COL5A1-208ENST00000618395 KIAA1211Q6ZU35 1233 aa18.72■□□□□ 0.59
COL5A1-208ENST00000618395 NEFHP12036 1026 aa18.72■□□□□ 0.59
COL5A1-208ENST00000618395 KNSTRNQ9Y448 316 aa18.72■□□□□ 0.59
COL5A1-208ENST00000618395 SENP3-EIF4A1A0A087X0R7 540 aa18.71■□□□□ 0.59
COL5A1-208ENST00000618395 HSP90B2PQ58FF3 399 aa18.71■□□□□ 0.59
COL5A1-208ENST00000618395 GOLGA6L19H0YKK7 550 aa18.71■□□□□ 0.58
COL5A1-208ENST00000618395 HSP90AB3PQ58FF7 597 aa18.71■□□□□ 0.58
COL5A1-208ENST00000618395 DIAPH3Q9NSV4 1193 aa18.7■□□□□ 0.58
COL5A1-208ENST00000618395 CCER2I3L3R5 266 aa18.7■□□□□ 0.58
COL5A1-208ENST00000618395 DEF6Q9H4E7 631 aa18.7■□□□□ 0.58
COL5A1-208ENST00000618395 KDM2AQ9Y2K7 1162 aa18.7■□□□□ 0.58
COL5A1-208ENST00000618395 HSP90B1P14625 803 aaKnown RBP18.69■□□□□ 0.58
COL5A1-208ENST00000618395 P3H3Q8IVL6 736 aa18.69■□□□□ 0.58
COL5A1-208ENST00000618395 UBE2Q2Q8WVN8 375 aa18.68■□□□□ 0.58
COL5A1-208ENST00000618395 DCTN1Q14203 1278 aa18.67■□□□□ 0.58
COL5A1-208ENST00000618395 TSR1Q2NL82 804 aaKnown RBP18.67■□□□□ 0.58
COL5A1-208ENST00000618395 RUFY1Q96T51 708 aa18.67■□□□□ 0.58
COL5A1-208ENST00000618395 ARID3CA6NKF2 412 aa18.67■□□□□ 0.58
COL5A1-208ENST00000618395 DDX49Q9Y6V7 483 aaKnown RBP18.66■□□□□ 0.58
COL5A1-208ENST00000618395 LEKR1Q6ZMV7 388 aa18.66■□□□□ 0.58
COL5A1-208ENST00000618395 DYDC1Q8WWB3 177 aa18.66■□□□□ 0.58
COL5A1-208ENST00000618395 CDR1P51861 262 aa18.65■□□□□ 0.58
COL5A1-208ENST00000618395 CEP89Q96ST8 783 aa18.65■□□□□ 0.58
COL5A1-208ENST00000618395 USP8P40818 1118 aa18.64■□□□□ 0.57
COL5A1-208ENST00000618395 CDCA8Q53HL2 280 aa18.64■□□□□ 0.57
COL5A1-208ENST00000618395 MAPK8IP3Q9UPT6 1336 aa18.64■□□□□ 0.57
COL5A1-208ENST00000618395 PRM3Q9NNZ6 103 aa18.62■□□□□ 0.57
COL5A1-208ENST00000618395 TPM1P09493 284 aa18.61■□□□□ 0.57
COL5A1-208ENST00000618395 R3HCC1Q9Y3T6 440 aaKnown RBP18.61■□□□□ 0.57
COL5A1-208ENST00000618395 ST18O60284 1047 aa18.6■□□□□ 0.57
COL5A1-208ENST00000618395 HOMER1Q86YM7 354 aa18.6■□□□□ 0.57
COL5A1-208ENST00000618395 MFAP1P55081 439 aaKnown RBP18.59■□□□□ 0.57
COL5A1-208ENST00000618395 PLCD4Q9BRC7 762 aa18.59■□□□□ 0.57
COL5A1-208ENST00000618395 TSPYL1Q9H0U9 437 aa18.59■□□□□ 0.57
COL5A1-208ENST00000618395 NEUROD2Q15784 382 aa18.59■□□□□ 0.57
COL5A1-208ENST00000618395 RWDD1Q9H446 243 aaPredicted RBP18.58■□□□□ 0.56
COL5A1-208ENST00000618395 KIF3AQ9Y496 699 aa18.57■□□□□ 0.56
COL5A1-208ENST00000618395 BECN2A8MW95 431 aa18.57■□□□□ 0.56
COL5A1-208ENST00000618395 RCAN3Q9UKA8 241 aa18.57■□□□□ 0.56
COL5A1-208ENST00000618395 HMGN5P82970 282 aaKnown RBP18.57■□□□□ 0.56
COL5A1-208ENST00000618395 PMFBP1Q8TBY8 1022 aa18.56■□□□□ 0.56
COL5A1-208ENST00000618395 ATP6V1DQ9Y5K8 247 aa18.56■□□□□ 0.56
COL5A1-208ENST00000618395 A0A0G2JS52 829 aa18.55■□□□□ 0.56
COL5A1-208ENST00000618395 CREBRFQ8IUR6 639 aa18.54■□□□□ 0.56
COL5A1-208ENST00000618395 MNS1Q8NEH6 495 aa18.54■□□□□ 0.56
COL5A1-208ENST00000618395 INCENPQ9NQS7 918 aa18.54■□□□□ 0.56
COL5A1-208ENST00000618395 MAPK8IP2Q13387 824 aaPredicted RBP18.54■□□□□ 0.56
COL5A1-208ENST00000618395 CCDC39Q9UFE4 941 aa18.53■□□□□ 0.56
COL5A1-208ENST00000618395 NUDCQ9Y266 331 aa18.53■□□□□ 0.56
COL5A1-208ENST00000618395 GOLGA2Q08379 1002 aa18.52■□□□□ 0.56
COL5A1-208ENST00000618395 ERCC4Q92889 916 aaPredicted RBP18.52■□□□□ 0.55
COL5A1-208ENST00000618395 IFT57Q9NWB7 429 aa18.51■□□□□ 0.55
COL5A1-208ENST00000618395 MRE11P49959 708 aa18.5■□□□□ 0.55
COL5A1-208ENST00000618395 IPO7O95373 1038 aaKnown RBP18.5■□□□□ 0.55
COL5A1-208ENST00000618395 NASPP49321 788 aaPredicted RBP18.5■□□□□ 0.55
COL5A1-208ENST00000618395 GRWD1Q9BQ67 446 aaKnown RBP eCLIP18.5■□□□□ 0.55
COL5A1-208ENST00000618395 EEA1Q15075 1411 aa18.5■□□□□ 0.55
COL5A1-208ENST00000618395 TPD52L1Q16890 204 aaPredicted RBP18.49■□□□□ 0.55
COL5A1-208ENST00000618395 PLPPR3Q6T4P5 718 aa18.49■□□□□ 0.55
COL5A1-208ENST00000618395 AEBP1Q8IUX7 1158 aa18.49■□□□□ 0.55
COL5A1-208ENST00000618395 RBM10P98175 930 aaKnown RBP18.49■□□□□ 0.55
COL5A1-208ENST00000618395 IPO8O15397 1037 aaKnown RBP18.49■□□□□ 0.55
COL5A1-208ENST00000618395 KIAA0754O94854 1291 aa18.49■□□□□ 0.55
COL5A1-208ENST00000618395 IL27Q8NEV9 243 aa18.49■□□□□ 0.55
COL5A1-208ENST00000618395 FOXD4L1Q9NU39 408 aa18.49■□□□□ 0.55
COL5A1-208ENST00000618395 GIMAP7Q8NHV1 300 aa18.48■□□□□ 0.55
COL5A1-208ENST00000618395 HAP1P54257 671 aaPredicted RBP18.48■□□□□ 0.55
COL5A1-208ENST00000618395 NEXNQ0ZGT2 675 aa18.47■□□□□ 0.55
COL5A1-208ENST00000618395 PES1O00541 588 aaKnown RBP18.47■□□□□ 0.55
COL5A1-208ENST00000618395 FAM161AQ3B820 660 aa18.47■□□□□ 0.55
COL5A1-208ENST00000618395 CHIC2Q9UKJ5 165 aa18.46■□□□□ 0.55
COL5A1-208ENST00000618395 ZRSR2Q15696 482 aaKnown RBP18.46■□□□□ 0.55
COL5A1-208ENST00000618395 GOLGA6L7A0A1B0GV03 622 aa18.46■□□□□ 0.55
COL5A1-208ENST00000618395 NPM1P06748 294 aaKnown RBP eCLIP18.45■□□□□ 0.54
COL5A1-208ENST00000618395 U2SURPO15042 1029 aaKnown RBP18.45■□□□□ 0.54
COL5A1-208ENST00000618395 PDE4AP27815 886 aa18.44■□□□□ 0.54
COL5A1-208ENST00000618395 CC2D1BQ5T0F9 858 aaKnown RBP18.44■□□□□ 0.54
COL5A1-208ENST00000618395 SF3A1Q15459 793 aaKnown RBP18.44■□□□□ 0.54
COL5A1-208ENST00000618395 BRPF3Q9ULD4 1205 aa18.43■□□□□ 0.54
COL5A1-208ENST00000618395 PABPN1Q86U42 306 aaKnown RBP eCLIP18.41■□□□□ 0.54
COL5A1-208ENST00000618395 RASSF8Q8NHQ8 419 aa18.41■□□□□ 0.54
COL5A1-208ENST00000618395 FOXD4L5Q5VV16 416 aaPredicted RBP18.4■□□□□ 0.54
COL5A1-208ENST00000618395 FOXD4L4Q8WXT5 416 aaPredicted RBP18.4■□□□□ 0.54
COL5A1-208ENST00000618395 C14orf37Q86TY3 774 aa18.4■□□□□ 0.54
COL5A1-208ENST00000618395 TSPY4P0CV99 314 aa18.39■□□□□ 0.54
COL5A1-208ENST00000618395 TSPY10P0CW01 314 aa18.39■□□□□ 0.54
COL5A1-208ENST00000618395 ZMYND15Q9H091 742 aa18.39■□□□□ 0.54
COL5A1-208ENST00000618395 NFKBIBQ15653 356 aa18.39■□□□□ 0.53
Retrieved 100 of 20,778 RNA–protein pairs in 43.7 ms