RNA–Protein interactions for RNA: ENST00000617432.4

CUL3-216, Transcript of cullin 3, humanhuman

TSL 5 BASIC

Gene CUL3, Length 1,426 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUL3-216ENST00000617432 ARSIQ5FYB1 569 aa12.2□□□□□ -0.46
CUL3-216ENST00000617432 ZNF316A6NFI3 1004 aaPredicted RBP12.18□□□□□ -0.46
CUL3-216ENST00000617432 LSM11P83369 360 aaKnown RBP eCLIP12.17□□□□□ -0.46
CUL3-216ENST00000617432 MS4A4AQ96JQ5 239 aa12.15□□□□□ -0.46
CUL3-216ENST00000617432 KHSRPQ92945 711 aaKnown RBP eCLIP12.1□□□□□ -0.472e-6■■■□□ 18.3
CUL3-216ENST00000617432 PBX2P40425 430 aa12.09□□□□□ -0.47
CUL3-216ENST00000617432 PHF8Q9UPP1 1060 aa12.09□□□□□ -0.47
CUL3-216ENST00000617432 PLA2G2EQ9NZK7 142 aa12.07□□□□□ -0.48
CUL3-216ENST00000617432 RIOK3O14730 519 aaKnown RBP12.05□□□□□ -0.48
CUL3-216ENST00000617432 HCSTQ9UBK5 93 aa12.04□□□□□ -0.48
CUL3-216ENST00000617432 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP12.03□□□□□ -0.48
CUL3-216ENST00000617432 ZFP91Q96JP5 570 aaPredicted RBP12.03□□□□□ -0.48
CUL3-216ENST00000617432 VGFO15240 615 aaPredicted RBP12.03□□□□□ -0.48
CUL3-216ENST00000617432 NLRP6P59044 892 aa12.01□□□□□ -0.49
CUL3-216ENST00000617432 NUDT7P0C024 238 aa11.97□□□□□ -0.49
CUL3-216ENST00000617432 POTEEQ6S8J3 1075 aa11.97□□□□□ -0.49
CUL3-216ENST00000617432 RNF25Q96BH1 459 aaPredicted RBP11.97□□□□□ -0.49
CUL3-216ENST00000617432 LHX6Q9UPM6 363 aa11.95□□□□□ -0.5
CUL3-216ENST00000617432 AXIN2Q9Y2T1 843 aa11.95□□□□□ -0.5
CUL3-216ENST00000617432 KIF3CO14782 793 aa11.94□□□□□ -0.5
CUL3-216ENST00000617432 SLC34A2O95436 690 aa11.94□□□□□ -0.5
CUL3-216ENST00000617432 FBXO22Q8NEZ5 403 aa11.94□□□□□ -0.5
CUL3-216ENST00000617432 PCDHGA4Q9Y5G9 962 aa11.92□□□□□ -0.5
CUL3-216ENST00000617432 C2orf72A6NCS6 295 aa11.91□□□□□ -0.5
CUL3-216ENST00000617432 ADGRD1Q6QNK2 874 aa11.9□□□□□ -0.5
CUL3-216ENST00000617432 ARHGAP33O14559 1287 aa11.89□□□□□ -0.51
CUL3-216ENST00000617432 PSDA5PKW4 1024 aaPredicted RBP11.86□□□□□ -0.51
CUL3-216ENST00000617432 TAOK2Q9UL54 1235 aa11.86□□□□□ -0.51
CUL3-216ENST00000617432 TK2O00142 265 aa11.85□□□□□ -0.51
CUL3-216ENST00000617432 BCL11BQ9C0K0 894 aaPredicted RBP11.84□□□□□ -0.51
CUL3-216ENST00000617432 MFRPQ9BY79 579 aa11.83□□□□□ -0.52
CUL3-216ENST00000617432 HRO43593 1189 aa11.8□□□□□ -0.52
CUL3-216ENST00000617432 TMC2Q8TDI7 906 aa11.79□□□□□ -0.52
CUL3-216ENST00000617432 STK24Q9Y6E0 443 aa11.79□□□□□ -0.52
CUL3-216ENST00000617432 DMRTA1Q5VZB9 504 aa11.75□□□□□ -0.53
CUL3-216ENST00000617432 KDM4FA0A1W2PPD8 638 aa11.74□□□□□ -0.53
CUL3-216ENST00000617432 RGS20O76081 388 aa11.74□□□□□ -0.53
CUL3-216ENST00000617432 KCTD12Q96CX2 325 aaKnown RBP11.74□□□□□ -0.53
CUL3-216ENST00000617432 STAC3Q96MF2 364 aa11.74□□□□□ -0.53
CUL3-216ENST00000617432 PSEN2P49810 448 aa11.72□□□□□ -0.53
CUL3-216ENST00000617432 PTCD2Q8WV60 388 aaKnown RBP11.69□□□□□ -0.54
CUL3-216ENST00000617432 STK25O00506 426 aa11.69□□□□□ -0.54
CUL3-216ENST00000617432 PPP4R3BQ5MIZ7 849 aa11.69□□□□□ -0.54
CUL3-216ENST00000617432 IFFO2Q5TF58 517 aa11.67□□□□□ -0.54
CUL3-216ENST00000617432 KCNH8Q96L42 1107 aa11.64□□□□□ -0.55
CUL3-216ENST00000617432 IRX2Q9BZI1 471 aaPredicted RBP11.64□□□□□ -0.55
CUL3-216ENST00000617432 PTPN5P54829 565 aa11.6□□□□□ -0.55
CUL3-216ENST00000617432 TBC1D12O60347 775 aa11.6□□□□□ -0.55
CUL3-216ENST00000617432 KCNK17Q96T54 332 aa11.59□□□□□ -0.55
CUL3-216ENST00000617432 VPS9D1Q9Y2B5 631 aa11.59□□□□□ -0.55
CUL3-216ENST00000617432 FOXK1P85037 733 aa11.58□□□□□ -0.56
CUL3-216ENST00000617432 PLPP6Q8IY26 295 aa11.57□□□□□ -0.56
CUL3-216ENST00000617432 PPP1R37O75864 691 aa11.56□□□□□ -0.56
CUL3-216ENST00000617432 A0A0G2JS52 829 aa11.55□□□□□ -0.56
CUL3-216ENST00000617432 SLC4A5Q9BY07 1137 aa11.54□□□□□ -0.56
CUL3-216ENST00000617432 THSD4Q6ZMP0 1018 aa11.52□□□□□ -0.57
CUL3-216ENST00000617432 GPHNQ9NQX3 736 aaPredicted RBP11.52□□□□□ -0.57
CUL3-216ENST00000617432 ECM2O94769 699 aaPredicted RBP11.5□□□□□ -0.57
CUL3-216ENST00000617432 BHMG1C9JSJ3 638 aaPredicted RBP11.48□□□□□ -0.57
CUL3-216ENST00000617432 BCL2L12Q9HB09 334 aa11.47□□□□□ -0.57
CUL3-216ENST00000617432 GOLGA8CPA6NN73 597 aa11.46□□□□□ -0.57
CUL3-216ENST00000617432 DSG2Q14126 1118 aa11.46□□□□□ -0.57
CUL3-216ENST00000617432 WNT2BQ93097 391 aa11.44□□□□□ -0.58
CUL3-216ENST00000617432 ZNF454Q8N9F8 522 aa11.43□□□□□ -0.58
CUL3-216ENST00000617432 MRPL50Q8N5N7 158 aaKnown RBP11.43□□□□□ -0.58
CUL3-216ENST00000617432 OXER1Q8TDS5 423 aa11.42□□□□□ -0.58
CUL3-216ENST00000617432 PTPREP23469 700 aa11.41□□□□□ -0.58
CUL3-216ENST00000617432 RGL2O15211 777 aa11.4□□□□□ -0.58
CUL3-216ENST00000617432 ZBED2Q9BTP6 218 aa11.4□□□□□ -0.58
CUL3-216ENST00000617432 FOSBP53539 338 aa11.37□□□□□ -0.59
CUL3-216ENST00000617432 NBPF3Q9H094 633 aa11.36□□□□□ -0.59
CUL3-216ENST00000617432 Q6ZNB5 142 aa11.35□□□□□ -0.59
CUL3-216ENST00000617432 ITGBL1O95965 494 aaPredicted RBP11.34□□□□□ -0.59
CUL3-216ENST00000617432 UPF1Q92900 1129 aaKnown RBP eCLIP11.34□□□□□ -0.59
CUL3-216ENST00000617432 NISCHQ9Y2I1 1504 aa11.32□□□□□ -0.6
CUL3-216ENST00000617432 PKD2Q13563 968 aa11.31□□□□□ -0.6
CUL3-216ENST00000617432 JPH4Q96JJ6 628 aa11.3□□□□□ -0.6
CUL3-216ENST00000617432 ANO8Q9HCE9 1232 aaPredicted RBP11.3□□□□□ -0.6
CUL3-216ENST00000617432 ZDHHC16Q969W1 377 aa11.28□□□□□ -0.6
CUL3-216ENST00000617432 ANKK1Q8NFD2 765 aa11.26□□□□□ -0.61
CUL3-216ENST00000617432 ADAM33Q9BZ11 813 aa11.26□□□□□ -0.61
CUL3-216ENST00000617432 LAPTM4AQ15012 233 aa11.24□□□□□ -0.61
CUL3-216ENST00000617432 NYAP1Q6ZVC0 841 aa11.24□□□□□ -0.61
CUL3-216ENST00000617432 RABGEF1Q9UJ41 708 aa11.24□□□□□ -0.61
CUL3-216ENST00000617432 PPP1R15BQ5SWA1 713 aa11.23□□□□□ -0.61
CUL3-216ENST00000617432 CRISPLD2Q9H0B8 497 aa11.23□□□□□ -0.61
CUL3-216ENST00000617432 EVI5O60447 810 aa11.21□□□□□ -0.61
CUL3-216ENST00000617432 HS6ST3Q8IZP7 471 aa11.21□□□□□ -0.61
CUL3-216ENST00000617432 PPP1R3GB7ZBB8 358 aa11.19□□□□□ -0.62
CUL3-216ENST00000617432 KCNC4Q03721 635 aa11.19□□□□□ -0.62
CUL3-216ENST00000617432 SOWAHBA6NEL2 793 aa11.18□□□□□ -0.62
CUL3-216ENST00000617432 LAPTM4BQ86VI4 370 aa11.18□□□□□ -0.62
CUL3-216ENST00000617432 BCAMP50895 628 aa11.18□□□□□ -0.62
CUL3-216ENST00000617432 PDE4AP27815 886 aa11.15□□□□□ -0.62
CUL3-216ENST00000617432 PROX2Q3B8N5 592 aa11.14□□□□□ -0.63
CUL3-216ENST00000617432 TRAF7Q6Q0C0 670 aa11.14□□□□□ -0.63
CUL3-216ENST00000617432 RYDENQ9NUL5 291 aaKnown RBP11.13□□□□□ -0.63
CUL3-216ENST00000617432 ZFRQ96KR1 1074 aaKnown RBP11.12□□□□□ -0.63
CUL3-216ENST00000617432 WBP1LQ9NX94 342 aa11.11□□□□□ -0.63
CUL3-216ENST00000617432 LCE2BO14633 110 aa11.1□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 22.5 ms