RNA–Protein interactions for RNA: ENST00000617054.1

NEK3-207, Transcript of NIMA related kinase 3, humanhuman

TSL 5

Gene NEK3, Length 3,256 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEK3-207ENST00000617054 SHROOM2Q13796 1616 aa11.43□□□□□ -0.58
NEK3-207ENST00000617054 OSCARQ8IYS5 282 aa11.42□□□□□ -0.58
NEK3-207ENST00000617054 FOXD1Q16676 465 aa11.42□□□□□ -0.58
NEK3-207ENST00000617054 TRIM52Q96A61 297 aa11.42□□□□□ -0.58
NEK3-207ENST00000617054 CLASP1Q7Z460 1538 aa11.42□□□□□ -0.58
NEK3-207ENST00000617054 GPATCH8Q9UKJ3 1502 aaKnown RBP11.41□□□□□ -0.58
NEK3-207ENST00000617054 NAIPQ13075 1403 aa11.41□□□□□ -0.58
NEK3-207ENST00000617054 MIA2Q96PC5 1412 aa11.4□□□□□ -0.58
NEK3-207ENST00000617054 HNRNPMP52272 730 aaKnown RBP eCLIP11.4□□□□□ -0.58
NEK3-207ENST00000617054 MAPKBP1O60336 1514 aa11.4□□□□□ -0.59
NEK3-207ENST00000617054 TCOF1Q13428 1488 aaKnown RBP11.39□□□□□ -0.59
NEK3-207ENST00000617054 HFM1A2PYH4 1435 aa11.39□□□□□ -0.59
NEK3-207ENST00000617054 ABCC5O15440 1437 aa11.38□□□□□ -0.59
NEK3-207ENST00000617054 DAPK1P53355 1430 aa11.37□□□□□ -0.59
NEK3-207ENST00000617054 KDM6BO15054 1643 aa11.37□□□□□ -0.59
NEK3-207ENST00000617054 CAMSAP2Q08AD1 1489 aa11.36□□□□□ -0.59
NEK3-207ENST00000617054 CLSPNQ9HAW4 1339 aa11.36□□□□□ -0.59
NEK3-207ENST00000617054 ZNF316A6NFI3 1004 aaPredicted RBP11.35□□□□□ -0.59
NEK3-207ENST00000617054 ABCC10Q5T3U5 1492 aa11.34□□□□□ -0.59
NEK3-207ENST00000617054 ABCC2Q92887 1545 aa11.34□□□□□ -0.59
NEK3-207ENST00000617054 DIEXFQ68CQ4 756 aaKnown RBP11.34□□□□□ -0.59
NEK3-207ENST00000617054 CDC42BPAQ5VT25 1732 aa11.33□□□□□ -0.6
NEK3-207ENST00000617054 ADCY10Q96PN6 1610 aa11.32□□□□□ -0.6
NEK3-207ENST00000617054 MPHOSPH9Q99550 1183 aa11.31□□□□□ -0.6
NEK3-207ENST00000617054 DNMT1P26358 1616 aaKnown RBP11.3□□□□□ -0.6
NEK3-207ENST00000617054 TSPY4P0CV99 314 aa11.3□□□□□ -0.6
NEK3-207ENST00000617054 TSPY10P0CW01 314 aa11.3□□□□□ -0.6
NEK3-207ENST00000617054 HIRIP3Q9BW71 556 aaPredicted RBP11.3□□□□□ -0.6
NEK3-207ENST00000617054 ZCCHC11Q5TAX3 1644 aaKnown RBP11.3□□□□□ -0.6
NEK3-207ENST00000617054 TTC37Q6PGP7 1564 aa11.3□□□□□ -0.6
NEK3-207ENST00000617054 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP11.29□□□□□ -0.6
NEK3-207ENST00000617054 ITSN2Q9NZM3 1697 aa11.29□□□□□ -0.6
NEK3-207ENST00000617054 AKNAQ7Z591 1439 aa11.29□□□□□ -0.6
NEK3-207ENST00000617054 NCOA1Q15788 1441 aa11.28□□□□□ -0.6
NEK3-207ENST00000617054 ARHGAP5Q13017 1502 aa11.27□□□□□ -0.61
NEK3-207ENST00000617054 CDC42BPBQ9Y5S2 1711 aa11.27□□□□□ -0.61
NEK3-207ENST00000617054 CYB5RLQ6IPT4 315 aa11.27□□□□□ -0.61
NEK3-207ENST00000617054 DENND4BO75064 1496 aaPredicted RBP11.27□□□□□ -0.61
NEK3-207ENST00000617054 KDM5BQ9UGL1 1544 aa11.27□□□□□ -0.61
NEK3-207ENST00000617054 ROCK1Q13464 1354 aa11.26□□□□□ -0.61
NEK3-207ENST00000617054 SAMD9LQ8IVG5 1584 aa11.25□□□□□ -0.61
NEK3-207ENST00000617054 C9orf84Q5VXU9 1444 aa11.25□□□□□ -0.61
NEK3-207ENST00000617054 GCC2Q8IWJ2 1684 aa11.25□□□□□ -0.61
NEK3-207ENST00000617054 UHRF1BP1LA0JNW5 1464 aa11.24□□□□□ -0.61
NEK3-207ENST00000617054 MBD5Q9P267 1494 aa11.24□□□□□ -0.61
NEK3-207ENST00000617054 ANKRD30AQ9BXX3 1397 aa11.24□□□□□ -0.61
NEK3-207ENST00000617054 NPM1P06748 294 aaKnown RBP eCLIP11.24□□□□□ -0.61
NEK3-207ENST00000617054 AFAP1Q8N556 730 aa11.24□□□□□ -0.61
NEK3-207ENST00000617054 GRWD1Q9BQ67 446 aaKnown RBP eCLIP11.23□□□□□ -0.617e-6■■■□□ 15
NEK3-207ENST00000617054 TONSLQ96HA7 1378 aa11.23□□□□□ -0.61
NEK3-207ENST00000617054 SYCP2Q9BX26 1530 aa11.23□□□□□ -0.61
NEK3-207ENST00000617054 PPP1R15AO75807 674 aaPredicted RBP11.23□□□□□ -0.61
NEK3-207ENST00000617054 EFCAB2Q5VUJ9 269 aa11.22□□□□□ -0.61
NEK3-207ENST00000617054 ANKRD50Q9ULJ7 1429 aa11.22□□□□□ -0.61
NEK3-207ENST00000617054 PREX2Q70Z35 1606 aa11.22□□□□□ -0.61
NEK3-207ENST00000617054 ARHGEF12Q9NZN5 1544 aa11.22□□□□□ -0.61
NEK3-207ENST00000617054 ASXL2Q76L83 1435 aa11.21□□□□□ -0.61
NEK3-207ENST00000617054 KIF15Q9NS87 1388 aa11.21□□□□□ -0.61
NEK3-207ENST00000617054 PKD2Q13563 968 aa11.21□□□□□ -0.62
NEK3-207ENST00000617054 FKBP8Q14318 412 aa11.21□□□□□ -0.62
NEK3-207ENST00000617054 MYT1LQ9UL68 1186 aa11.21□□□□□ -0.62
NEK3-207ENST00000617054 PLCH2O75038 1416 aa11.2□□□□□ -0.62
NEK3-207ENST00000617054 NUP155O75694 1391 aa11.2□□□□□ -0.62
NEK3-207ENST00000617054 WDR7Q9Y4E6 1490 aa11.2□□□□□ -0.62
NEK3-207ENST00000617054 CROCC2H7BZ55 1655 aa11.19□□□□□ -0.62
NEK3-207ENST00000617054 CCDC141Q6ZP82 1450 aa11.19□□□□□ -0.62
NEK3-207ENST00000617054 MIER1Q8N108 512 aa11.19□□□□□ -0.62
NEK3-207ENST00000617054 MYO5CQ9NQX4 1742 aa11.19□□□□□ -0.62
NEK3-207ENST00000617054 TRAPPC8Q9Y2L5 1435 aa11.19□□□□□ -0.62
NEK3-207ENST00000617054 L3MBTL2Q969R5 705 aa11.18□□□□□ -0.62
NEK3-207ENST00000617054 ADGRL2O95490 1459 aa11.18□□□□□ -0.62
NEK3-207ENST00000617054 ADGBQ8N7X0 1667 aa11.17□□□□□ -0.62
NEK3-207ENST00000617054 PZPP20742 1482 aa11.17□□□□□ -0.62
NEK3-207ENST00000617054 ANKRD30BQ9BXX2 1392 aa11.16□□□□□ -0.62
NEK3-207ENST00000617054 RSPH4AQ5TD94 716 aa11.16□□□□□ -0.62
NEK3-207ENST00000617054 ZNF326Q5BKZ1 582 aaKnown RBP11.14□□□□□ -0.63
NEK3-207ENST00000617054 TIMELESSQ9UNS1 1208 aa11.14□□□□□ -0.63
NEK3-207ENST00000617054 ARHGEF5Q12774 1597 aa11.14□□□□□ -0.63
NEK3-207ENST00000617054 FANCAO15360 1455 aa11.14□□□□□ -0.63
NEK3-207ENST00000617054 SHANK2Q9UPX8 1470 aa11.14□□□□□ -0.63
NEK3-207ENST00000617054 SPAG9O60271 1321 aaKnown RBP11.13□□□□□ -0.63
NEK3-207ENST00000617054 PLEKHH2Q8IVE3 1493 aa11.13□□□□□ -0.63
NEK3-207ENST00000617054 KIAA1107Q9UPP5 1409 aa11.12□□□□□ -0.63
NEK3-207ENST00000617054 YTHDC1Q96MU7 727 aaKnown RBP11.12□□□□□ -0.63
NEK3-207ENST00000617054 SCAPERQ9BY12 1400 aa11.12□□□□□ -0.63
NEK3-207ENST00000617054 DDX10Q13206 875 aaKnown RBP11.11□□□□□ -0.63
NEK3-207ENST00000617054 NBPF8Q3BBV2 869 aa11.11□□□□□ -0.63
NEK3-207ENST00000617054 KDM2AQ9Y2K7 1162 aa11.1□□□□□ -0.63
NEK3-207ENST00000617054 ABCC1P33527 1531 aa11.1□□□□□ -0.63
NEK3-207ENST00000617054 RAPGEF3O95398 923 aa11.1□□□□□ -0.63
NEK3-207ENST00000617054 CD109Q6YHK3 1445 aa11.09□□□□□ -0.63
NEK3-207ENST00000617054 ADGRL1O94910 1474 aa11.09□□□□□ -0.63
NEK3-207ENST00000617054 RGL3Q3MIN7 710 aa11.09□□□□□ -0.63
NEK3-207ENST00000617054 RIMBP3CA6NJZ7 1639 aa11.08□□□□□ -0.64
NEK3-207ENST00000617054 RIMBP3BA6NNM3 1639 aa11.08□□□□□ -0.64
NEK3-207ENST00000617054 ABCA9Q8IUA7 1624 aa11.08□□□□□ -0.64
NEK3-207ENST00000617054 RIMBP3Q9UFD9 1639 aa11.08□□□□□ -0.64
NEK3-207ENST00000617054 RPRD2Q5VT52 1461 aaKnown RBP11.08□□□□□ -0.64
NEK3-207ENST00000617054 KIF3BO15066 747 aa11.07□□□□□ -0.64
NEK3-207ENST00000617054 FAM69CQ0P6D2 419 aa11.06□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 54.3 ms