RNA–Protein interactions for RNA: ENST00000616236.1

RFC3-203, Transcript of replication factor C subunit 3, humanhuman

TSL 3

Gene RFC3, Length 612 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RFC3-203ENST00000616236 MS4A4AQ96JQ5 239 aa9.09□□□□□ -0.95
RFC3-203ENST00000616236 C1orf115Q9H7X2 142 aa9.09□□□□□ -0.95
RFC3-203ENST00000616236 MAP3K13O43283 966 aa9.06□□□□□ -0.96
RFC3-203ENST00000616236 POTEHQ6S545 545 aa9.06□□□□□ -0.96
RFC3-203ENST00000616236 FAM117AQ9C073 453 aa9.05□□□□□ -0.96
RFC3-203ENST00000616236 ZNF316A6NFI3 1004 aaPredicted RBP9.04□□□□□ -0.96
RFC3-203ENST00000616236 ARID3CA6NKF2 412 aa9.03□□□□□ -0.96
RFC3-203ENST00000616236 NPM2Q86SE8 214 aaKnown RBP9.02□□□□□ -0.97
RFC3-203ENST00000616236 KIF12Q96FN5 646 aa9.02□□□□□ -0.97
RFC3-203ENST00000616236 APBB1O00213 710 aa9.01□□□□□ -0.97
RFC3-203ENST00000616236 PLEKHG3A1L390 1219 aa8.99□□□□□ -0.97
RFC3-203ENST00000616236 PPP1R15BQ5SWA1 713 aa8.99□□□□□ -0.97
RFC3-203ENST00000616236 DPYSL4O14531 572 aa8.98□□□□□ -0.97
RFC3-203ENST00000616236 GPR37O15354 613 aa8.98□□□□□ -0.97
RFC3-203ENST00000616236 PAK3O75914 559 aaPredicted RBP8.98□□□□□ -0.97
RFC3-203ENST00000616236 FLIIQ13045 1269 aa8.97□□□□□ -0.97
RFC3-203ENST00000616236 DDRGK1Q96HY6 314 aa8.97□□□□□ -0.97
RFC3-203ENST00000616236 SPDYE16A6NNV3 312 aaPredicted RBP8.96□□□□□ -0.98
RFC3-203ENST00000616236 EMILIN3Q9NT22 766 aa8.95□□□□□ -0.98
RFC3-203ENST00000616236 MINK1Q8N4C8 1332 aaPredicted RBP8.95□□□□□ -0.98
RFC3-203ENST00000616236 PRKAR2AP13861 404 aaKnown RBP8.94□□□□□ -0.98
RFC3-203ENST00000616236 GOLGA2Q08379 1002 aa8.94□□□□□ -0.98
RFC3-203ENST00000616236 PDIA6Q15084 440 aa8.94□□□□□ -0.98
RFC3-203ENST00000616236 GPHNQ9NQX3 736 aaPredicted RBP8.94□□□□□ -0.98
RFC3-203ENST00000616236 CCDC102AQ96A19 550 aa8.93□□□□□ -0.98
RFC3-203ENST00000616236 PDIA4P13667 645 aaKnown RBP8.92□□□□□ -0.98
RFC3-203ENST00000616236 PARP9Q8IXQ6 854 aa8.92□□□□□ -0.98
RFC3-203ENST00000616236 MAP2K5Q13163 448 aa8.91□□□□□ -0.98
RFC3-203ENST00000616236 AMHR2Q16671 573 aa8.91□□□□□ -0.98
RFC3-203ENST00000616236 IRF6O14896 467 aa8.9□□□□□ -0.98
RFC3-203ENST00000616236 NUTM2FA1L443 756 aa8.89□□□□□ -0.99
RFC3-203ENST00000616236 ZBTB7CA1YPR0 619 aa8.89□□□□□ -0.99
RFC3-203ENST00000616236 ONECUT3O60422 494 aaPredicted RBP8.89□□□□□ -0.99
RFC3-203ENST00000616236 DSG2Q14126 1118 aa8.88□□□□□ -0.99
RFC3-203ENST00000616236 CCDC82Q8N4S0 544 aa8.88□□□□□ -0.99
RFC3-203ENST00000616236 CLUAP1Q96AJ1 413 aa8.88□□□□□ -0.99
RFC3-203ENST00000616236 TMEM106CQ9BVX2 250 aa8.88□□□□□ -0.99
RFC3-203ENST00000616236 A6NJR5 290 aa8.87□□□□□ -0.99
RFC3-203ENST00000616236 TRAK2O60296 914 aa8.87□□□□□ -0.99
RFC3-203ENST00000616236 GOPCQ9HD26 462 aa8.87□□□□□ -0.99
RFC3-203ENST00000616236 GRXCR2A6NFK2 248 aa8.86□□□□□ -0.99
RFC3-203ENST00000616236 NECTIN2Q92692 538 aa8.85□□□□□ -0.99
RFC3-203ENST00000616236 GNPATO15228 680 aa8.84□□□□□ -0.99
RFC3-203ENST00000616236 CCDC9Q9Y3X0 531 aaKnown RBP8.84□□□□□ -0.99
RFC3-203ENST00000616236 FECHP22830 423 aa8.83□□□□□ -1
RFC3-203ENST00000616236 TTLL12Q14166 644 aaPredicted RBP8.83□□□□□ -1
RFC3-203ENST00000616236 PHF12Q96QT6 1004 aa8.83□□□□□ -1
RFC3-203ENST00000616236 PCMTD1Q96MG8 357 aaPredicted RBP8.82□□□□□ -1
RFC3-203ENST00000616236 ZRANB1Q9UGI0 708 aa8.82□□□□□ -1
RFC3-203ENST00000616236 FXR2P51116 673 aaKnown RBP eCLIP8.81□□□□□ -1
RFC3-203ENST00000616236 FCHSD2O94868 740 aa8.8□□□□□ -1
RFC3-203ENST00000616236 OSBPP22059 807 aa8.8□□□□□ -1
RFC3-203ENST00000616236 FOXK1P85037 733 aa8.8□□□□□ -1
RFC3-203ENST00000616236 HIC1Q14526 733 aa8.8□□□□□ -1
RFC3-203ENST00000616236 TMC2Q8TDI7 906 aa8.8□□□□□ -1
RFC3-203ENST00000616236 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP8.8□□□□□ -13e-10■■□□□ 11.5
RFC3-203ENST00000616236 TRPC6Q9Y210 931 aa8.8□□□□□ -1
RFC3-203ENST00000616236 MS4A1P11836 297 aa8.79□□□□□ -1
RFC3-203ENST00000616236 ILDR1Q86SU0 546 aaPredicted RBP8.79□□□□□ -1
RFC3-203ENST00000616236 MAP3K9P80192 1104 aa8.78□□□□□ -1
RFC3-203ENST00000616236 MCM6Q14566 821 aa8.78□□□□□ -1
RFC3-203ENST00000616236 CHRDL2Q6WN34 429 aa8.78□□□□□ -1
RFC3-203ENST00000616236 GIGYF2Q6Y7W6 1299 aaKnown RBP8.78□□□□□ -1
RFC3-203ENST00000616236 PLPP6Q8IY26 295 aa8.77□□□□□ -1.01
RFC3-203ENST00000616236 ZNF777Q9ULD5 760 aaPredicted RBP8.77□□□□□ -1.01
RFC3-203ENST00000616236 DPY19L2Q6NUT2 758 aa8.75□□□□□ -1.01
RFC3-203ENST00000616236 MICALL2Q8IY33 904 aa8.75□□□□□ -1.01
RFC3-203ENST00000616236 REPIN1Q9BWE0 567 aaKnown RBP8.75□□□□□ -1.01
RFC3-203ENST00000616236 PROSER2Q86WR7 435 aaPredicted RBP8.74□□□□□ -1.01
RFC3-203ENST00000616236 MS4A3Q96HJ5 214 aa8.74□□□□□ -1.01
RFC3-203ENST00000616236 CD44P16070 742 aaKnown RBP8.73□□□□□ -1.01
RFC3-203ENST00000616236 SH3D19Q5HYK7 790 aa8.73□□□□□ -1.01
RFC3-203ENST00000616236 DDX12PQ92771 950 aa8.73□□□□□ -1.01
RFC3-203ENST00000616236 C2orf72A6NCS6 295 aa8.71□□□□□ -1.02
RFC3-203ENST00000616236 PTGER2P43116 358 aa8.71□□□□□ -1.02
RFC3-203ENST00000616236 FNBP4Q8N3X1 1017 aaPredicted RBP8.71□□□□□ -1.02
RFC3-203ENST00000616236 OXER1Q8TDS5 423 aa8.71□□□□□ -1.02
RFC3-203ENST00000616236 UPF1Q92900 1129 aaKnown RBP eCLIP8.71□□□□□ -1.02
RFC3-203ENST00000616236 POM121Q96HA1 1249 aa8.71□□□□□ -1.02
RFC3-203ENST00000616236 TRAIPQ9BWF2 469 aa8.71□□□□□ -1.02
RFC3-203ENST00000616236 PRIM1P49642 420 aaKnown RBP8.7□□□□□ -1.02
RFC3-203ENST00000616236 PTGDRQ13258 359 aa8.7□□□□□ -1.02
RFC3-203ENST00000616236 KCTD17Q8N5Z5 321 aa8.7□□□□□ -1.02
RFC3-203ENST00000616236 CCDC97Q96F63 343 aaPredicted RBP8.7□□□□□ -1.02
RFC3-203ENST00000616236 SERPINA10Q9UK55 444 aa8.7□□□□□ -1.02
RFC3-203ENST00000616236 TTLL13PA6NNM8 815 aa8.69□□□□□ -1.02
RFC3-203ENST00000616236 RAD21O60216 631 aa8.68□□□□□ -1.02
RFC3-203ENST00000616236 TIE1P35590 1138 aa8.68□□□□□ -1.02
RFC3-203ENST00000616236 SKIV2LQ15477 1246 aaKnown RBP8.68□□□□□ -1.02
RFC3-203ENST00000616236 TMUB1Q9BVT8 246 aa8.68□□□□□ -1.02
RFC3-203ENST00000616236 KIF3CO14782 793 aa8.67□□□□□ -1.02
RFC3-203ENST00000616236 ATP1B4Q9UN42 357 aaPredicted RBP8.67□□□□□ -1.02
RFC3-203ENST00000616236 AEBP1Q8IUX7 1158 aa8.66□□□□□ -1.02
RFC3-203ENST00000616236 PIP4P2Q8N4L2 257 aa8.66□□□□□ -1.02
RFC3-203ENST00000616236 PROCA1Q8NCQ7 364 aaPredicted RBP8.66□□□□□ -1.02
RFC3-203ENST00000616236 CLCN1P35523 988 aa8.65□□□□□ -1.02
RFC3-203ENST00000616236 SSTR3P32745 418 aaPredicted RBP8.64□□□□□ -1.03
RFC3-203ENST00000616236 MDM2Q00987 491 aaPredicted RBP8.64□□□□□ -1.03
RFC3-203ENST00000616236 BMP2KQ9NSY1 1161 aaPredicted RBP8.64□□□□□ -1.03
RFC3-203ENST00000616236 TRIM35Q9UPQ4 493 aa8.64□□□□□ -1.03
Retrieved 100 of 20,778 RNA–protein pairs in 13.4 ms