RNA–Protein interactions for RNA: ENST00000612497.1

SSX3-204, Transcript of SSX family member 3, humanhuman

TSL 5 BASIC

Gene SSX3, Length 1,030 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SSX3-204ENST00000612497 STRCQ7RTU9 1775 aa17.7■□□□□ 0.42
SSX3-204ENST00000612497 PLEKHD1A6NEE1 506 aa17.69■□□□□ 0.42
SSX3-204ENST00000612497 CEBPAP49715 358 aaPredicted RBP17.68■□□□□ 0.42
SSX3-204ENST00000612497 MAGI2Q86UL8 1455 aa17.68■□□□□ 0.42
SSX3-204ENST00000612497 NUP153P49790 1475 aaKnown RBP17.67■□□□□ 0.42
SSX3-204ENST00000612497 SAMD9Q5K651 1589 aa17.66■□□□□ 0.42
SSX3-204ENST00000612497 HECW1Q76N89 1606 aa17.65■□□□□ 0.42
SSX3-204ENST00000612497 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP17.64■□□□□ 0.41
SSX3-204ENST00000612497 ARHGEF12Q9NZN5 1544 aa17.64■□□□□ 0.41
SSX3-204ENST00000612497 SETD1BQ9UPS6 1966 aaKnown RBP17.64■□□□□ 0.41
SSX3-204ENST00000612497 UHRF1BP1Q6BDS2 1440 aa17.62■□□□□ 0.41
SSX3-204ENST00000612497 ATP10AO60312 1499 aa17.61■□□□□ 0.41
SSX3-204ENST00000612497 RANGAP1P46060 587 aaPredicted RBP17.6■□□□□ 0.41
SSX3-204ENST00000612497 SCAPERQ9BY12 1400 aa17.6■□□□□ 0.41
SSX3-204ENST00000612497 C9orf84Q5VXU9 1444 aa17.59■□□□□ 0.41
SSX3-204ENST00000612497 PTPRTO14522 1441 aa17.58■□□□□ 0.41
SSX3-204ENST00000612497 LTBP4Q8N2S1 1624 aa17.54■□□□□ 0.4
SSX3-204ENST00000612497 IQSEC2Q5JU85 1478 aa17.52■□□□□ 0.4
SSX3-204ENST00000612497 PLCH2O75038 1416 aa17.52■□□□□ 0.4
SSX3-204ENST00000612497 MYT1LQ9UL68 1186 aa17.5■□□□□ 0.39
SSX3-204ENST00000612497 EFCAB2Q5VUJ9 269 aa17.49■□□□□ 0.39
SSX3-204ENST00000612497 C3P01024 1663 aa17.48■□□□□ 0.39
SSX3-204ENST00000612497 ESF1Q9H501 851 aaKnown RBP17.48■□□□□ 0.39
SSX3-204ENST00000612497 CSRNP3Q8WYN3 585 aa17.47■□□□□ 0.39
SSX3-204ENST00000612497 UBAP1LF5GYI3 381 aa17.46■□□□□ 0.39
SSX3-204ENST00000612497 MYO5CQ9NQX4 1742 aa17.46■□□□□ 0.39
SSX3-204ENST00000612497 CDK13Q14004 1512 aaKnown RBP17.46■□□□□ 0.39
SSX3-204ENST00000612497 ZNF518AQ6AHZ1 1483 aa17.44■□□□□ 0.38
SSX3-204ENST00000612497 AFAP1Q8N556 730 aa17.44■□□□□ 0.38
SSX3-204ENST00000612497 NCOA1Q15788 1441 aa17.44■□□□□ 0.38
SSX3-204ENST00000612497 TRAPPC8Q9Y2L5 1435 aa17.44■□□□□ 0.38
SSX3-204ENST00000612497 DIP2CQ9Y2E4 1556 aa17.4■□□□□ 0.38
SSX3-204ENST00000612497 ATP1B4Q9UN42 357 aaPredicted RBP17.4■□□□□ 0.38
SSX3-204ENST00000612497 KDM5CP41229 1560 aa17.4■□□□□ 0.38
SSX3-204ENST00000612497 ZNF335Q9H4Z2 1342 aaPredicted RBP17.39■□□□□ 0.37
SSX3-204ENST00000612497 CAMSAP1Q5T5Y3 1602 aa17.39■□□□□ 0.37
SSX3-204ENST00000612497 REREQ9P2R6 1566 aa17.38■□□□□ 0.37
SSX3-204ENST00000612497 ARHGAP5Q13017 1502 aa17.37■□□□□ 0.37
SSX3-204ENST00000612497 NCKAP5LQ9HCH0 1330 aa17.37■□□□□ 0.37
SSX3-204ENST00000612497 ABCA6Q8N139 1617 aa17.36■□□□□ 0.37
SSX3-204ENST00000612497 CDK11AQ9UQ88 783 aaPredicted RBP17.35■□□□□ 0.37
SSX3-204ENST00000612497 AGLP35573 1532 aa17.34■□□□□ 0.37
SSX3-204ENST00000612497 KIF14Q15058 1648 aa17.34■□□□□ 0.37
SSX3-204ENST00000612497 CNTLNQ9NXG0 1405 aa17.34■□□□□ 0.37
SSX3-204ENST00000612497 MLH3Q9UHC1 1453 aa17.32■□□□□ 0.36
SSX3-204ENST00000612497 SCAF1Q9H7N4 1312 aaKnown RBP17.32■□□□□ 0.36
SSX3-204ENST00000612497 FOXD1Q16676 465 aa17.32■□□□□ 0.36
SSX3-204ENST00000612497 MED1Q15648 1581 aaPredicted RBP17.32■□□□□ 0.36
SSX3-204ENST00000612497 HSPA1LP34931 641 aa17.3■□□□□ 0.36
SSX3-204ENST00000612497 NPATQ14207 1427 aa17.3■□□□□ 0.36
SSX3-204ENST00000612497 PIP4K2BP78356 416 aa17.29■□□□□ 0.36
SSX3-204ENST00000612497 SUPT6HQ7KZ85 1726 aaKnown RBP17.29■□□□□ 0.36
SSX3-204ENST00000612497 PKD2Q13563 968 aa17.28■□□□□ 0.36
SSX3-204ENST00000612497 CDC42BPBQ9Y5S2 1711 aa17.27■□□□□ 0.36
SSX3-204ENST00000612497 MROH2AA6NES4 1674 aa17.27■□□□□ 0.36
SSX3-204ENST00000612497 CLIP1P30622 1438 aa17.27■□□□□ 0.35
SSX3-204ENST00000612497 TROQ12816 1431 aaPredicted RBP17.27■□□□□ 0.35
SSX3-204ENST00000612497 ZMYM3Q14202 1370 aa17.27■□□□□ 0.35
SSX3-204ENST00000612497 KIDINS220Q9ULH0 1771 aa17.25■□□□□ 0.35
SSX3-204ENST00000612497 FMN1Q68DA7 1419 aa17.24■□□□□ 0.35
SSX3-204ENST00000612497 PPP6R1Q9UPN7 881 aa17.24■□□□□ 0.35
SSX3-204ENST00000612497 PLA2R1Q13018 1463 aa17.24■□□□□ 0.35
SSX3-204ENST00000612497 ITSN2Q9NZM3 1697 aa17.23■□□□□ 0.35
SSX3-204ENST00000612497 EEA1Q15075 1411 aa17.23■□□□□ 0.35
SSX3-204ENST00000612497 TOM1O60784 492 aa17.23■□□□□ 0.35
SSX3-204ENST00000612497 ABCC1P33527 1531 aa17.22■□□□□ 0.35
SSX3-204ENST00000612497 MYO3AQ8NEV4 1616 aa17.22■□□□□ 0.35
SSX3-204ENST00000612497 ZNF142P52746 1687 aaPredicted RBP17.22■□□□□ 0.35
SSX3-204ENST00000612497 TCOF1Q13428 1488 aaKnown RBP17.21■□□□□ 0.35
SSX3-204ENST00000612497 CEP170BQ9Y4F5 1589 aaPredicted RBP17.2■□□□□ 0.34
SSX3-204ENST00000612497 CLTCQ00610 1675 aaKnown RBP17.2■□□□□ 0.34
SSX3-204ENST00000612497 PREX2Q70Z35 1606 aa17.19■□□□□ 0.34
SSX3-204ENST00000612497 PTPRKQ15262 1439 aa17.16■□□□□ 0.34
SSX3-204ENST00000612497 LRRIQ1Q96JM4 1722 aa17.16■□□□□ 0.34
SSX3-204ENST00000612497 EHMT2Q96KQ7 1210 aa17.15■□□□□ 0.34
SSX3-204ENST00000612497 UBTFP17480 764 aaKnown RBP17.14■□□□□ 0.33
SSX3-204ENST00000612497 ZNF777Q9ULD5 760 aaPredicted RBP17.14■□□□□ 0.33
SSX3-204ENST00000612497 CPS1P31327 1500 aa17.14■□□□□ 0.33
SSX3-204ENST00000612497 SPAG9O60271 1321 aaKnown RBP17.14■□□□□ 0.33
SSX3-204ENST00000612497 SAMD9LQ8IVG5 1584 aa17.14■□□□□ 0.33
SSX3-204ENST00000612497 GGT6Q6P531 493 aa17.13■□□□□ 0.33
SSX3-204ENST00000612497 POTEDQ86YR6 584 aa17.13■□□□□ 0.33
SSX3-204ENST00000612497 ARHGAP35Q9NRY4 1499 aa17.12■□□□□ 0.33
SSX3-204ENST00000612497 CDC42BPAQ5VT25 1732 aa17.12■□□□□ 0.33
SSX3-204ENST00000612497 SHANK2Q9UPX8 1470 aa17.12■□□□□ 0.33
SSX3-204ENST00000612497 POLR1AO95602 1720 aaPredicted RBP17.1■□□□□ 0.33
SSX3-204ENST00000612497 A2ML1A8K2U0 1454 aa17.09■□□□□ 0.33
SSX3-204ENST00000612497 DNMT1P26358 1616 aaKnown RBP17.09■□□□□ 0.33
SSX3-204ENST00000612497 HNRNPMP52272 730 aaKnown RBP eCLIP17.08■□□□□ 0.32
SSX3-204ENST00000612497 SYCP2Q9BX26 1530 aa17.07■□□□□ 0.32
SSX3-204ENST00000612497 A2MP01023 1474 aa17.07■□□□□ 0.32
SSX3-204ENST00000612497 ATP7AQ04656 1500 aa17.06■□□□□ 0.32
SSX3-204ENST00000612497 PLXNC1O60486 1568 aa17.06■□□□□ 0.32
SSX3-204ENST00000612497 NEURL4Q96JN8 1562 aa17.05■□□□□ 0.32
SSX3-204ENST00000612497 CCDC18Q5T9S5 1454 aa17.03■□□□□ 0.32
SSX3-204ENST00000612497 ALKQ9UM73 1620 aa17.03■□□□□ 0.32
SSX3-204ENST00000612497 ANKLE2Q86XL3 938 aa17.02■□□□□ 0.32
SSX3-204ENST00000612497 VWDEQ8N2E2 1590 aa17.02■□□□□ 0.31
SSX3-204ENST00000612497 INO80Q9ULG1 1556 aaPredicted RBP17.02■□□□□ 0.31
SSX3-204ENST00000612497 TNRQ92752 1358 aa17■□□□□ 0.31
Retrieved 100 of 20,778 RNA–protein pairs in 20.1 ms