RNA–Protein interactions for RNA: ENST00000602011.5

SHKBP1-227, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 5

Gene SHKBP1, Length 897 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-227ENST00000602011 ZFYVE16Q7Z3T8 1539 aa29.33■■■□□ 2.29
SHKBP1-227ENST00000602011 ATP1B4Q9UN42 357 aaPredicted RBP29.32■■■□□ 2.28
SHKBP1-227ENST00000602011 HECW1Q76N89 1606 aa29.31■■■□□ 2.28
SHKBP1-227ENST00000602011 MAGI2Q86UL8 1455 aa29.3■■■□□ 2.28
SHKBP1-227ENST00000602011 PLCH2O75038 1416 aa29.3■■■□□ 2.28
SHKBP1-227ENST00000602011 POGZQ7Z3K3 1410 aa29.28■■■□□ 2.28
SHKBP1-227ENST00000602011 SCAPERQ9BY12 1400 aa29.28■■■□□ 2.28
SHKBP1-227ENST00000602011 EFCAB2Q5VUJ9 269 aa29.28■■■□□ 2.28
SHKBP1-227ENST00000602011 ARHGAP35Q9NRY4 1499 aa29.24■■■□□ 2.27
SHKBP1-227ENST00000602011 FER1L4A9Z1Z3 1794 aa29.18■■■□□ 2.26
SHKBP1-227ENST00000602011 KIF14Q15058 1648 aa29.17■■■□□ 2.26
SHKBP1-227ENST00000602011 CLIP1P30622 1438 aa29.15■■■□□ 2.26
SHKBP1-227ENST00000602011 TROQ12816 1431 aaPredicted RBP29.15■■■□□ 2.26
SHKBP1-227ENST00000602011 MYO5CQ9NQX4 1742 aa29.14■■■□□ 2.25
SHKBP1-227ENST00000602011 ATP10AO60312 1499 aa29.13■■■□□ 2.25
SHKBP1-227ENST00000602011 CEBPAP49715 358 aaPredicted RBP29.11■■■□□ 2.25
SHKBP1-227ENST00000602011 C9orf84Q5VXU9 1444 aa29.11■■■□□ 2.25
SHKBP1-227ENST00000602011 ARHGEF12Q9NZN5 1544 aa29.1■■■□□ 2.25
SHKBP1-227ENST00000602011 AFAP1Q8N556 730 aa29.07■■■□□ 2.24
SHKBP1-227ENST00000602011 ARHGAP5Q13017 1502 aa29.06■■■□□ 2.24
SHKBP1-227ENST00000602011 LRRIQ1Q96JM4 1722 aa29.06■■■□□ 2.24
SHKBP1-227ENST00000602011 ZNF518AQ6AHZ1 1483 aa29.04■■■□□ 2.24
SHKBP1-227ENST00000602011 CASKIN1Q8WXD9 1431 aa29.03■■■□□ 2.24
SHKBP1-227ENST00000602011 MYT1LQ9UL68 1186 aa29.02■■■□□ 2.24
SHKBP1-227ENST00000602011 CERKQ8TCT0 537 aa29.01■■■□□ 2.23
SHKBP1-227ENST00000602011 CCDC18Q5T9S5 1454 aa29.01■■■□□ 2.23
SHKBP1-227ENST00000602011 KDM5CP41229 1560 aa28.99■■■□□ 2.23
SHKBP1-227ENST00000602011 DIP2CQ9Y2E4 1556 aa28.96■■■□□ 2.23
SHKBP1-227ENST00000602011 PREX1Q8TCU6 1659 aa28.96■■■□□ 2.23
SHKBP1-227ENST00000602011 CDC42BPBQ9Y5S2 1711 aa28.95■■■□□ 2.23
SHKBP1-227ENST00000602011 ABCA6Q8N139 1617 aa28.92■■■□□ 2.22
SHKBP1-227ENST00000602011 TRAPPC8Q9Y2L5 1435 aa28.92■■■□□ 2.22
SHKBP1-227ENST00000602011 MLH3Q9UHC1 1453 aa28.9■■■□□ 2.22
SHKBP1-227ENST00000602011 STRCQ7RTU9 1775 aa28.88■■■□□ 2.21
SHKBP1-227ENST00000602011 PREX2Q70Z35 1606 aa28.87■■■□□ 2.21
SHKBP1-227ENST00000602011 FYCO1Q9BQS8 1478 aa28.86■■■□□ 2.21
SHKBP1-227ENST00000602011 ABCC1P33527 1531 aa28.86■■■□□ 2.21
SHKBP1-227ENST00000602011 UHRF1BP1Q6BDS2 1440 aa28.86■■■□□ 2.21
SHKBP1-227ENST00000602011 REREQ9P2R6 1566 aa28.84■■■□□ 2.21
SHKBP1-227ENST00000602011 ITSN2Q9NZM3 1697 aa28.83■■■□□ 2.21
SHKBP1-227ENST00000602011 ESF1Q9H501 851 aaKnown RBP28.82■■■□□ 2.2
SHKBP1-227ENST00000602011 C3P01024 1663 aa28.82■■■□□ 2.2
SHKBP1-227ENST00000602011 DMRT2Q9Y5R5 561 aa28.8■■■□□ 2.2
SHKBP1-227ENST00000602011 KIDINS220Q9ULH0 1771 aa28.78■■■□□ 2.2
SHKBP1-227ENST00000602011 CDC42BPAQ5VT25 1732 aa28.77■■■□□ 2.2
SHKBP1-227ENST00000602011 SETD1BQ9UPS6 1966 aaKnown RBP28.77■■■□□ 2.2
SHKBP1-227ENST00000602011 ZNF777Q9ULD5 760 aaPredicted RBP28.77■■■□□ 2.2
SHKBP1-227ENST00000602011 AGLP35573 1532 aa28.77■■■□□ 2.2
SHKBP1-227ENST00000602011 CFDP1Q9UEE9 299 aaPredicted RBP28.71■■■□□ 2.19
SHKBP1-227ENST00000602011 KIAA1107Q9UPP5 1409 aa28.7■■■□□ 2.19
SHKBP1-227ENST00000602011 GPATCH8Q9UKJ3 1502 aaKnown RBP28.7■■■□□ 2.19
SHKBP1-227ENST00000602011 SAMD9LQ8IVG5 1584 aa28.7■■■□□ 2.18
SHKBP1-227ENST00000602011 SPAG9O60271 1321 aaKnown RBP28.69■■■□□ 2.18
SHKBP1-227ENST00000602011 CNTLNQ9NXG0 1405 aa28.69■■■□□ 2.18
SHKBP1-227ENST00000602011 PLEKHH2Q8IVE3 1493 aa28.69■■■□□ 2.18
SHKBP1-227ENST00000602011 HNRNPMP52272 730 aaKnown RBP eCLIP28.68■■■□□ 2.18
SHKBP1-227ENST00000602011 SYCP2Q9BX26 1530 aa28.68■■■□□ 2.18
SHKBP1-227ENST00000602011 CCNB3Q8WWL7 1395 aa28.66■■■□□ 2.18
SHKBP1-227ENST00000602011 MTUS2Q5JR59 1369 aa28.65■■■□□ 2.18
SHKBP1-227ENST00000602011 PTPRTO14522 1441 aa28.65■■■□□ 2.18
SHKBP1-227ENST00000602011 SUPT6HQ7KZ85 1726 aaKnown RBP28.61■■■□□ 2.17
SHKBP1-227ENST00000602011 NCOA1Q15788 1441 aa28.6■■■□□ 2.17
SHKBP1-227ENST00000602011 PPP6R1Q9UPN7 881 aa28.59■■■□□ 2.17
SHKBP1-227ENST00000602011 DISP3Q9P2K9 1392 aa28.59■■■□□ 2.17
SHKBP1-227ENST00000602011 LTBP4Q8N2S1 1624 aa28.58■■■□□ 2.17
SHKBP1-227ENST00000602011 ZMYM3Q14202 1370 aa28.58■■■□□ 2.17
SHKBP1-227ENST00000602011 ILDR2Q71H61 639 aa28.57■■■□□ 2.16
SHKBP1-227ENST00000602011 ATP7AQ04656 1500 aa28.56■■■□□ 2.16
SHKBP1-227ENST00000602011 CAMSAP1Q5T5Y3 1602 aa28.55■■■□□ 2.16
SHKBP1-227ENST00000602011 MROH2AA6NES4 1674 aa28.54■■■□□ 2.16
SHKBP1-227ENST00000602011 NPATQ14207 1427 aa28.53■■■□□ 2.16
SHKBP1-227ENST00000602011 NCKAP5LQ9HCH0 1330 aa28.53■■■□□ 2.16
SHKBP1-227ENST00000602011 CLTCQ00610 1675 aaKnown RBP28.53■■■□□ 2.16
SHKBP1-227ENST00000602011 INO80Q9ULG1 1556 aaPredicted RBP28.52■■■□□ 2.16
SHKBP1-227ENST00000602011 RSPH4AQ5TD94 716 aa28.51■■■□□ 2.15
SHKBP1-227ENST00000602011 GGT6Q6P531 493 aa28.5■■■□□ 2.15
SHKBP1-227ENST00000602011 A2MP01023 1474 aa28.5■■■□□ 2.15
SHKBP1-227ENST00000602011 PLXNC1O60486 1568 aa28.5■■■□□ 2.15
SHKBP1-227ENST00000602011 ZNF644Q9H582 1327 aaPredicted RBP28.49■■■□□ 2.15
SHKBP1-227ENST00000602011 CEP162Q5TB80 1403 aa28.48■■■□□ 2.15
SHKBP1-227ENST00000602011 RTEL1-TNFRSF6BF6WH68 1400 aa28.45■■■□□ 2.15
SHKBP1-227ENST00000602011 EHBP1L1Q8N3D4 1523 aa28.45■■■□□ 2.15
SHKBP1-227ENST00000602011 ZNF335Q9H4Z2 1342 aaPredicted RBP28.44■■■□□ 2.14
SHKBP1-227ENST00000602011 PTPRKQ15262 1439 aa28.43■■■□□ 2.14
SHKBP1-227ENST00000602011 MYO3AQ8NEV4 1616 aa28.43■■■□□ 2.14
SHKBP1-227ENST00000602011 TIAM1Q13009 1591 aa28.41■■■□□ 2.14
SHKBP1-227ENST00000602011 MBD5Q9P267 1494 aa28.4■■■□□ 2.14
SHKBP1-227ENST00000602011 SPATA31D1Q6ZQQ2 1576 aa28.39■■■□□ 2.14
SHKBP1-227ENST00000602011 CEP170BQ9Y4F5 1589 aaPredicted RBP28.39■■■□□ 2.14
SHKBP1-227ENST00000602011 ZNF142P52746 1687 aaPredicted RBP28.38■■■□□ 2.13
SHKBP1-227ENST00000602011 IQSEC2Q5JU85 1478 aa28.38■■■□□ 2.13
SHKBP1-227ENST00000602011 DHX29Q7Z478 1369 aaKnown RBP28.37■■■□□ 2.13
SHKBP1-227ENST00000602011 ADGBQ8N7X0 1667 aa28.35■■■□□ 2.13
SHKBP1-227ENST00000602011 PKD2Q13563 968 aa28.35■■■□□ 2.13
SHKBP1-227ENST00000602011 PLA2R1Q13018 1463 aa28.34■■■□□ 2.13
SHKBP1-227ENST00000602011 TCOF1Q13428 1488 aaKnown RBP28.33■■■□□ 2.13
SHKBP1-227ENST00000602011 SOCS7O14512 581 aa28.32■■■□□ 2.12
SHKBP1-227ENST00000602011 UBAP1LF5GYI3 381 aa28.31■■■□□ 2.12
SHKBP1-227ENST00000602011 TSPY4P0CV99 314 aa28.31■■■□□ 2.12
SHKBP1-227ENST00000602011 TSPY10P0CW01 314 aa28.31■■■□□ 2.12
Retrieved 100 of 20,778 RNA–protein pairs in 37.4 ms