RNA–Protein interactions for RNA: ENST00000591545.5

SMARCA4-216, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4, humanhuman

TSL 2

Gene SMARCA4, Length 5,193 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCA4-216ENST00000591545 NUP155O75694 1391 aa17.23■□□□□ 0.35
SMARCA4-216ENST00000591545 PPP4R2Q9NY27 417 aa17.23■□□□□ 0.35
SMARCA4-216ENST00000591545 ERICH6BQ5W0A0 696 aa17.23■□□□□ 0.35
SMARCA4-216ENST00000591545 HNRNPMP52272 730 aaKnown RBP eCLIP17.22■□□□□ 0.355e-6■■□□□ 11.8
SMARCA4-216ENST00000591545 CCDC18Q5T9S5 1454 aa17.21■□□□□ 0.35
SMARCA4-216ENST00000591545 TIMELESSQ9UNS1 1208 aa17.21■□□□□ 0.35
SMARCA4-216ENST00000591545 CDK11BP21127 795 aaKnown RBP17.2■□□□□ 0.34
SMARCA4-216ENST00000591545 PAK3O75914 559 aaPredicted RBP17.2■□□□□ 0.34
SMARCA4-216ENST00000591545 CASC1Q6TDU7 716 aa17.2■□□□□ 0.34
SMARCA4-216ENST00000591545 FTSJ3Q8IY81 847 aaKnown RBP17.19■□□□□ 0.34
SMARCA4-216ENST00000591545 KANK4Q5T7N3 995 aaPredicted RBP17.19■□□□□ 0.34
SMARCA4-216ENST00000591545 SETD5Q9C0A6 1442 aa17.19■□□□□ 0.34
SMARCA4-216ENST00000591545 CC2D1BQ5T0F9 858 aaKnown RBP17.18■□□□□ 0.34
SMARCA4-216ENST00000591545 MORC1Q86VD1 984 aa17.18■□□□□ 0.34
SMARCA4-216ENST00000591545 CSB-PGBD3P0DP91 1061 aa17.17■□□□□ 0.34
SMARCA4-216ENST00000591545 FHOD3Q2V2M9 1422 aa17.17■□□□□ 0.34
SMARCA4-216ENST00000591545 SUPT16HQ9Y5B9 1047 aaKnown RBP17.17■□□□□ 0.34
SMARCA4-216ENST00000591545 AEBP2Q6ZN18 517 aaPredicted RBP17.16■□□□□ 0.34
SMARCA4-216ENST00000591545 CHMP4BQ9H444 224 aaKnown RBP17.16■□□□□ 0.34
SMARCA4-216ENST00000591545 MS4A1P11836 297 aa17.13■□□□□ 0.33
SMARCA4-216ENST00000591545 PTMAP06454 111 aaKnown RBP17.13■□□□□ 0.33
SMARCA4-216ENST00000591545 CCDC9Q9Y3X0 531 aaKnown RBP17.12■□□□□ 0.33
SMARCA4-216ENST00000591545 RTF1Q92541 710 aaKnown RBP17.12■□□□□ 0.33
SMARCA4-216ENST00000591545 NOP58Q9Y2X3 529 aaKnown RBP17.12■□□□□ 0.33
SMARCA4-216ENST00000591545 ZRSR1Q15695 479 aaKnown RBP17.11■□□□□ 0.33
SMARCA4-216ENST00000591545 MPHOSPH9Q99550 1183 aa17.11■□□□□ 0.33
SMARCA4-216ENST00000591545 FAM69CQ0P6D2 419 aa17.1■□□□□ 0.33
SMARCA4-216ENST00000591545 GAPVD1Q14C86 1478 aa17.09■□□□□ 0.33
SMARCA4-216ENST00000591545 EIF3AQ14152 1382 aaKnown RBP17.09■□□□□ 0.33
SMARCA4-216ENST00000591545 GOLGA2Q08379 1002 aa17.08■□□□□ 0.32
SMARCA4-216ENST00000591545 OS9Q13438 667 aaPredicted RBP17.08■□□□□ 0.32
SMARCA4-216ENST00000591545 FOXD1Q16676 465 aa17.07■□□□□ 0.32
SMARCA4-216ENST00000591545 NGDNQ8NEJ9 315 aaKnown RBP17.07■□□□□ 0.32
SMARCA4-216ENST00000591545 NCAPD3P42695 1498 aa17.07■□□□□ 0.32
SMARCA4-216ENST00000591545 ROCK2O75116 1388 aaKnown RBP17.06■□□□□ 0.32
SMARCA4-216ENST00000591545 CCER2I3L3R5 266 aa17.05■□□□□ 0.32
SMARCA4-216ENST00000591545 TERF2IPQ9NYB0 399 aa17.05■□□□□ 0.32
SMARCA4-216ENST00000591545 SENP3-EIF4A1A0A087X0R7 540 aa17.04■□□□□ 0.32
SMARCA4-216ENST00000591545 FRAT1Q92837 279 aaPredicted RBP17.03■□□□□ 0.32
SMARCA4-216ENST00000591545 DNTTIP2Q5QJE6 756 aaKnown RBP17.02■□□□□ 0.32
SMARCA4-216ENST00000591545 FGD5Q6ZNL6 1462 aa17.02■□□□□ 0.31
SMARCA4-216ENST00000591545 CHMP4AQ9BY43 222 aa17.01■□□□□ 0.31
SMARCA4-216ENST00000591545 NUTM2DQ5VT03 806 aaPredicted RBP17.01■□□□□ 0.31
SMARCA4-216ENST00000591545 SYNJ1O43426 1573 aa16.99■□□□□ 0.31
SMARCA4-216ENST00000591545 CALD1Q05682 793 aaKnown RBP16.99■□□□□ 0.31
SMARCA4-216ENST00000591545 CFAP44Q96MT7 982 aa16.99■□□□□ 0.31
SMARCA4-216ENST00000591545 GOLGA6L6A8MZA4 724 aa16.98■□□□□ 0.31
SMARCA4-216ENST00000591545 HSPA5P11021 654 aaKnown RBP16.98■□□□□ 0.31
SMARCA4-216ENST00000591545 NAP1L5Q96NT1 182 aaPredicted RBP16.98■□□□□ 0.31
SMARCA4-216ENST00000591545 VGFO15240 615 aaPredicted RBP16.98■□□□□ 0.31
SMARCA4-216ENST00000591545 KTN1Q86UP2 1357 aaKnown RBP16.97■□□□□ 0.31
SMARCA4-216ENST00000591545 L1TD1Q5T7N2 865 aaKnown RBP16.97■□□□□ 0.31
SMARCA4-216ENST00000591545 RGS3P49796 1198 aa16.96■□□□□ 0.31
SMARCA4-216ENST00000591545 HSP90AB1P08238 724 aaKnown RBP16.96■□□□□ 0.31
SMARCA4-216ENST00000591545 TMX4Q9H1E5 349 aaPredicted RBP16.96■□□□□ 0.31
SMARCA4-216ENST00000591545 RAB3GAP2Q9H2M9 1393 aa16.96■□□□□ 0.31
SMARCA4-216ENST00000591545 RAD54L2Q9Y4B4 1467 aa16.95■□□□□ 0.3
SMARCA4-216ENST00000591545 UACAQ9BZF9 1416 aa16.95■□□□□ 0.3
SMARCA4-216ENST00000591545 NRDCO43847 1150 aa16.95■□□□□ 0.3
SMARCA4-216ENST00000591545 U2AF1L5P0DN76 240 aaPredicted RBP16.95■□□□□ 0.3
SMARCA4-216ENST00000591545 U2AF1Q01081 240 aaKnown RBP eCLIP16.95■□□□□ 0.3
SMARCA4-216ENST00000591545 ZNF330Q9Y3S2 320 aaPredicted RBP16.94■□□□□ 0.3
SMARCA4-216ENST00000591545 AQRO60306 1485 aaKnown RBP eCLIP16.94■□□□□ 0.33e-7■■■■□ 25.6
SMARCA4-216ENST00000591545 AMPHP49418 695 aa16.93■□□□□ 0.3
SMARCA4-216ENST00000591545 NUTM2FA1L443 756 aa16.92■□□□□ 0.3
SMARCA4-216ENST00000591545 HSCBQ8IWL3 235 aa16.92■□□□□ 0.3
SMARCA4-216ENST00000591545 BICRAQ9NZM4 1560 aa16.91■□□□□ 0.3
SMARCA4-216ENST00000591545 IGF1RP08069 1367 aa16.91■□□□□ 0.3
SMARCA4-216ENST00000591545 CCDC144AA2RUR9 1427 aa16.9■□□□□ 0.3
SMARCA4-216ENST00000591545 TRAK1Q9UPV9 953 aa16.9■□□□□ 0.3
SMARCA4-216ENST00000591545 KIF21BO75037 1637 aa16.9■□□□□ 0.3
SMARCA4-216ENST00000591545 GRIN2BQ13224 1484 aa16.9■□□□□ 0.3
SMARCA4-216ENST00000591545 KCNJ4P48050 445 aa16.89■□□□□ 0.3
SMARCA4-216ENST00000591545 FGD1P98174 961 aa16.89■□□□□ 0.3
SMARCA4-216ENST00000591545 B4GALNT3Q6L9W6 998 aa16.89■□□□□ 0.29
SMARCA4-216ENST00000591545 PTMSP20962 102 aa16.88■□□□□ 0.29
SMARCA4-216ENST00000591545 ABCF1Q8NE71 845 aaKnown RBP eCLIP16.88■□□□□ 0.29
SMARCA4-216ENST00000591545 IPO8O15397 1037 aaKnown RBP16.87■□□□□ 0.29
SMARCA4-216ENST00000591545 RALBP1Q15311 655 aa16.87■□□□□ 0.29
SMARCA4-216ENST00000591545 MRC2Q9UBG0 1479 aa16.87■□□□□ 0.29
SMARCA4-216ENST00000591545 CHAF1AQ13111 956 aaPredicted RBP16.86■□□□□ 0.29
SMARCA4-216ENST00000591545 L3MBTL2Q969R5 705 aa16.86■□□□□ 0.29
SMARCA4-216ENST00000591545 MCCP23508 829 aa16.85■□□□□ 0.29
SMARCA4-216ENST00000591545 STK31Q9BXU1 1019 aa16.84■□□□□ 0.29
SMARCA4-216ENST00000591545 EVA1CP58658 441 aa16.84■□□□□ 0.29
SMARCA4-216ENST00000591545 LTV1Q96GA3 475 aaPredicted RBP16.84■□□□□ 0.29
SMARCA4-216ENST00000591545 SUGP2Q8IX01 1082 aaKnown RBP eCLIP16.83■□□□□ 0.29
SMARCA4-216ENST00000591545 HDAC5Q9UQL6 1122 aa16.83■□□□□ 0.29
SMARCA4-216ENST00000591545 RBM19Q9Y4C8 960 aaKnown RBP16.82■□□□□ 0.28
SMARCA4-216ENST00000591545 MSNP26038 577 aaKnown RBP16.82■□□□□ 0.28
SMARCA4-216ENST00000591545 LMOD3Q0VAK6 560 aa16.82■□□□□ 0.28
SMARCA4-216ENST00000591545 DHX57Q6P158 1386 aaKnown RBP16.81■□□□□ 0.28
SMARCA4-216ENST00000591545 PLCB2Q00722 1185 aa16.81■□□□□ 0.28
SMARCA4-216ENST00000591545 IFT140Q96RY7 1462 aa16.81■□□□□ 0.28
SMARCA4-216ENST00000591545 DEKP35659 375 aaKnown RBP16.81■□□□□ 0.28
SMARCA4-216ENST00000591545 UNC13AQ9UPW8 1703 aa16.81■□□□□ 0.28
SMARCA4-216ENST00000591545 CFTRP13569 1480 aa16.81■□□□□ 0.28
SMARCA4-216ENST00000591545 GOLGA6L4A6NEF3 574 aa16.81■□□□□ 0.28
SMARCA4-216ENST00000591545 MEX3CQ5U5Q3 659 aaKnown RBP16.81■□□□□ 0.28
SMARCA4-216ENST00000591545 TOP2BQ02880 1626 aa16.8■□□□□ 0.28
Retrieved 100 of 20,778 RNA–protein pairs in 14.3 ms