RNA–Protein interactions for RNA: ENST00000581383.1

SMCHD1-205, Transcript of structural maintenance of chromosomes flexible hinge domain containing 1, humanhuman

TSL 3

Gene SMCHD1, Length 806 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMCHD1-205ENST00000581383 DCAF8L2P0C7V8 631 aa12.48□□□□□ -0.41
SMCHD1-205ENST00000581383 MICALL2Q8IY33 904 aa12.46□□□□□ -0.41
SMCHD1-205ENST00000581383 CHGAP10645 457 aaKnown RBP12.44□□□□□ -0.42
SMCHD1-205ENST00000581383 ZNF710Q8N1W2 664 aa12.44□□□□□ -0.42
SMCHD1-205ENST00000581383 MS4A4AQ96JQ5 239 aa12.43□□□□□ -0.42
SMCHD1-205ENST00000581383 RNF166Q96A37 237 aaPredicted RBP12.41□□□□□ -0.42
SMCHD1-205ENST00000581383 MFRPQ9BY79 579 aa12.41□□□□□ -0.42
SMCHD1-205ENST00000581383 RIMBP2O15034 1052 aa12.38□□□□□ -0.43
SMCHD1-205ENST00000581383 DOK7Q18PE1 504 aa12.38□□□□□ -0.43
SMCHD1-205ENST00000581383 FBXO22Q8NEZ5 403 aa12.38□□□□□ -0.43
SMCHD1-205ENST00000581383 HS6ST3Q8IZP7 471 aa12.34□□□□□ -0.43
SMCHD1-205ENST00000581383 TMC2Q8TDI7 906 aa12.28□□□□□ -0.44
SMCHD1-205ENST00000581383 MYT1LQ9UL68 1186 aa12.28□□□□□ -0.44
SMCHD1-205ENST00000581383 TMEM92Q6UXU6 159 aa12.27□□□□□ -0.45
SMCHD1-205ENST00000581383 RYDENQ9NUL5 291 aaKnown RBP12.26□□□□□ -0.45
SMCHD1-205ENST00000581383 HOXB1P14653 301 aaPredicted RBP12.25□□□□□ -0.45
SMCHD1-205ENST00000581383 ERBB3P21860 1342 aa12.25□□□□□ -0.45
SMCHD1-205ENST00000581383 HOXB3P14651 431 aaPredicted RBP12.24□□□□□ -0.45
SMCHD1-205ENST00000581383 PPP1R37O75864 691 aa12.21□□□□□ -0.45
SMCHD1-205ENST00000581383 C2orf72A6NCS6 295 aa12.2□□□□□ -0.46
SMCHD1-205ENST00000581383 ZSWIM6Q9HCJ5 1215 aa12.18□□□□□ -0.46
SMCHD1-205ENST00000581383 ARSIQ5FYB1 569 aa12.13□□□□□ -0.47
SMCHD1-205ENST00000581383 VARS2Q5ST30 1063 aaKnown RBP12.13□□□□□ -0.47
SMCHD1-205ENST00000581383 PTGER2P43116 358 aa12.11□□□□□ -0.47
SMCHD1-205ENST00000581383 NKX1-1Q15270 411 aaPredicted RBP12.1□□□□□ -0.47
SMCHD1-205ENST00000581383 KIF3CO14782 793 aa12.08□□□□□ -0.48
SMCHD1-205ENST00000581383 ZNF687Q8N1G0 1237 aa12.08□□□□□ -0.48
SMCHD1-205ENST00000581383 GPR153Q6NV75 609 aa12.07□□□□□ -0.48
SMCHD1-205ENST00000581383 DNAJC5Q9H3Z4 198 aa12.07□□□□□ -0.48
SMCHD1-205ENST00000581383 KHSRPQ92945 711 aaKnown RBP eCLIP12.05□□□□□ -0.485e-8■■■■□ 19.6
SMCHD1-205ENST00000581383 NUDT7P0C024 238 aa12.03□□□□□ -0.48
SMCHD1-205ENST00000581383 PLPP6Q8IY26 295 aa12.03□□□□□ -0.48
SMCHD1-205ENST00000581383 GPHNQ9NQX3 736 aaPredicted RBP12.02□□□□□ -0.49
SMCHD1-205ENST00000581383 PCDHGA4Q9Y5G9 962 aa12.02□□□□□ -0.49
SMCHD1-205ENST00000581383 TBC1D12O60347 775 aa12□□□□□ -0.49
SMCHD1-205ENST00000581383 ZNF316A6NFI3 1004 aaPredicted RBP11.99□□□□□ -0.49
SMCHD1-205ENST00000581383 FOXK1P85037 733 aa11.99□□□□□ -0.49
SMCHD1-205ENST00000581383 GTPBP6O43824 516 aaPredicted RBP11.98□□□□□ -0.49
SMCHD1-205ENST00000581383 PDE4AP27815 886 aa11.98□□□□□ -0.49
SMCHD1-205ENST00000581383 DSG2Q14126 1118 aa11.98□□□□□ -0.49
SMCHD1-205ENST00000581383 SLC34A2O95436 690 aa11.97□□□□□ -0.49
SMCHD1-205ENST00000581383 ANKRD13DQ6ZTN6 518 aa11.95□□□□□ -0.5
SMCHD1-205ENST00000581383 PLA2G2EQ9NZK7 142 aa11.93□□□□□ -0.5
SMCHD1-205ENST00000581383 ZBTB4Q9P1Z0 1013 aaPredicted RBP11.93□□□□□ -0.5
SMCHD1-205ENST00000581383 LHX6Q9UPM6 363 aa11.93□□□□□ -0.5
SMCHD1-205ENST00000581383 PPP1R15BQ5SWA1 713 aa11.92□□□□□ -0.5
SMCHD1-205ENST00000581383 UPF1Q92900 1129 aaKnown RBP eCLIP11.92□□□□□ -0.5
SMCHD1-205ENST00000581383 BBXQ8WY36 941 aaPredicted RBP11.91□□□□□ -0.5
SMCHD1-205ENST00000581383 LARP6Q9BRS8 491 aaKnown RBP11.91□□□□□ -0.5
SMCHD1-205ENST00000581383 PTCD2Q8WV60 388 aaKnown RBP11.89□□□□□ -0.51
SMCHD1-205ENST00000581383 PSDA5PKW4 1024 aaPredicted RBP11.88□□□□□ -0.51
SMCHD1-205ENST00000581383 SLC24A1O60721 1099 aa11.88□□□□□ -0.51
SMCHD1-205ENST00000581383 DDX27Q96GQ7 796 aaKnown RBP11.87□□□□□ -0.51
SMCHD1-205ENST00000581383 CRISPLD2Q9H0B8 497 aa11.87□□□□□ -0.51
SMCHD1-205ENST00000581383 SPRYD3Q8NCJ5 442 aa11.84□□□□□ -0.51
SMCHD1-205ENST00000581383 NCKAP5LQ9HCH0 1330 aa11.84□□□□□ -0.51
SMCHD1-205ENST00000581383 LSM11P83369 360 aaKnown RBP eCLIP11.83□□□□□ -0.52
SMCHD1-205ENST00000581383 KCNH8Q96L42 1107 aa11.83□□□□□ -0.52
SMCHD1-205ENST00000581383 PPP4R3BQ5MIZ7 849 aa11.82□□□□□ -0.52
SMCHD1-205ENST00000581383 CFAP44Q96MT7 982 aa11.82□□□□□ -0.52
SMCHD1-205ENST00000581383 PBX2P40425 430 aa11.81□□□□□ -0.52
SMCHD1-205ENST00000581383 MAP3K9P80192 1104 aa11.81□□□□□ -0.52
SMCHD1-205ENST00000581383 AXIN2Q9Y2T1 843 aa11.81□□□□□ -0.52
SMCHD1-205ENST00000581383 HCSTQ9UBK5 93 aa11.8□□□□□ -0.52
SMCHD1-205ENST00000581383 PAXIP1Q6ZW49 1069 aaPredicted RBP11.78□□□□□ -0.52
SMCHD1-205ENST00000581383 OXER1Q8TDS5 423 aa11.77□□□□□ -0.53
SMCHD1-205ENST00000581383 STAC3Q96MF2 364 aa11.76□□□□□ -0.53
SMCHD1-205ENST00000581383 ARHGAP33O14559 1287 aa11.75□□□□□ -0.53
SMCHD1-205ENST00000581383 ZNF454Q8N9F8 522 aa11.75□□□□□ -0.53
SMCHD1-205ENST00000581383 CADPS2Q86UW7 1296 aa11.73□□□□□ -0.53
SMCHD1-205ENST00000581383 EVI5O60447 810 aa11.72□□□□□ -0.53
SMCHD1-205ENST00000581383 MFSD10Q14728 455 aa11.7□□□□□ -0.54
SMCHD1-205ENST00000581383 KCNK17Q96T54 332 aa11.7□□□□□ -0.54
SMCHD1-205ENST00000581383 PSEN2P49810 448 aa11.69□□□□□ -0.54
SMCHD1-205ENST00000581383 WDR70Q9NW82 654 aa11.69□□□□□ -0.54
SMCHD1-205ENST00000581383 KDM4FA0A1W2PPD8 638 aa11.68□□□□□ -0.54
SMCHD1-205ENST00000581383 ADGRD1Q6QNK2 874 aa11.65□□□□□ -0.54
SMCHD1-205ENST00000581383 POTEEQ6S8J3 1075 aa11.65□□□□□ -0.54
SMCHD1-205ENST00000581383 PTPREP23469 700 aa11.63□□□□□ -0.55
SMCHD1-205ENST00000581383 DMRTA1Q5VZB9 504 aa11.62□□□□□ -0.55
SMCHD1-205ENST00000581383 EMILIN3Q9NT22 766 aa11.62□□□□□ -0.55
SMCHD1-205ENST00000581383 ZDHHC16Q969W1 377 aa11.61□□□□□ -0.55
SMCHD1-205ENST00000581383 JPH4Q96JJ6 628 aa11.61□□□□□ -0.55
SMCHD1-205ENST00000581383 FOSBP53539 338 aa11.6□□□□□ -0.55
SMCHD1-205ENST00000581383 TK2O00142 265 aa11.59□□□□□ -0.55
SMCHD1-205ENST00000581383 DPYSL4O14531 572 aa11.59□□□□□ -0.55
SMCHD1-205ENST00000581383 ANO8Q9HCE9 1232 aaPredicted RBP11.59□□□□□ -0.55
SMCHD1-205ENST00000581383 PLCB2Q00722 1185 aa11.58□□□□□ -0.56
SMCHD1-205ENST00000581383 BCL2L12Q9HB09 334 aa11.58□□□□□ -0.56
SMCHD1-205ENST00000581383 IRX2Q9BZI1 471 aaPredicted RBP11.56□□□□□ -0.56
SMCHD1-205ENST00000581383 GOLGA8CPA6NN73 597 aa11.55□□□□□ -0.56
SMCHD1-205ENST00000581383 RGS20O76081 388 aa11.54□□□□□ -0.56
SMCHD1-205ENST00000581383 E2F4Q16254 413 aa11.53□□□□□ -0.56
SMCHD1-205ENST00000581383 TYW1BQ6NUM6 668 aa11.53□□□□□ -0.56
SMCHD1-205ENST00000581383 ADAM33Q9BZ11 813 aa11.53□□□□□ -0.56
SMCHD1-205ENST00000581383 CAMK2BQ13554 666 aa11.52□□□□□ -0.57
SMCHD1-205ENST00000581383 FBXW7Q969H0 707 aa11.52□□□□□ -0.57
SMCHD1-205ENST00000581383 PHF14O94880 888 aa11.51□□□□□ -0.57
SMCHD1-205ENST00000581383 KCTD12Q96CX2 325 aaKnown RBP11.51□□□□□ -0.57
SMCHD1-205ENST00000581383 DDX12PQ92771 950 aa11.5□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 28.3 ms