RNA–Protein interactions for RNA: ENST00000574755.5

VPS33B-208, Transcript of VPS33B, late endosome and lysosome associated, humanhuman

TSL 2

Gene VPS33B, Length 2,356 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS33B-208ENST00000574755 SHROOM2Q13796 1616 aa20.28■□□□□ 0.84
VPS33B-208ENST00000574755 CAMSAP2Q08AD1 1489 aa20.27■□□□□ 0.84
VPS33B-208ENST00000574755 ROCK1Q13464 1354 aa20.26■□□□□ 0.83
VPS33B-208ENST00000574755 MIER1Q8N108 512 aa20.26■□□□□ 0.83
VPS33B-208ENST00000574755 TRIM52Q96A61 297 aa20.24■□□□□ 0.83
VPS33B-208ENST00000574755 TONSLQ96HA7 1378 aa20.23■□□□□ 0.83
VPS33B-208ENST00000574755 ZNF777Q9ULD5 760 aaPredicted RBP20.22■□□□□ 0.83
VPS33B-208ENST00000574755 CDC42BPAQ5VT25 1732 aa20.22■□□□□ 0.83
VPS33B-208ENST00000574755 PPP1R15AO75807 674 aaPredicted RBP20.2■□□□□ 0.82
VPS33B-208ENST00000574755 ABCC10Q5T3U5 1492 aa20.19■□□□□ 0.82
VPS33B-208ENST00000574755 CROCC2H7BZ55 1655 aa20.18■□□□□ 0.82
VPS33B-208ENST00000574755 ADGBQ8N7X0 1667 aa20.18■□□□□ 0.82
VPS33B-208ENST00000574755 ERCC6L2Q5T890 1561 aa20.17■□□□□ 0.82
VPS33B-208ENST00000574755 DENND4BO75064 1496 aaPredicted RBP20.17■□□□□ 0.82
VPS33B-208ENST00000574755 ACIN1Q9UKV3 1341 aaKnown RBP20.16■□□□□ 0.82
VPS33B-208ENST00000574755 MPHOSPH9Q99550 1183 aa20.15■□□□□ 0.82
VPS33B-208ENST00000574755 CENPBP07199 599 aaPredicted RBP20.14■□□□□ 0.82
VPS33B-208ENST00000574755 CLASP1Q7Z460 1538 aa20.13■□□□□ 0.81
VPS33B-208ENST00000574755 NCOA1Q15788 1441 aa20.12■□□□□ 0.81
VPS33B-208ENST00000574755 ADGRL2O95490 1459 aa20.11■□□□□ 0.81
VPS33B-208ENST00000574755 ABCC2Q92887 1545 aa20.1■□□□□ 0.81
VPS33B-208ENST00000574755 ANKRD30AQ9BXX3 1397 aa20.08■□□□□ 0.81
VPS33B-208ENST00000574755 YTHDC1Q96MU7 727 aaKnown RBP20.08■□□□□ 0.8
VPS33B-208ENST00000574755 PREX2Q70Z35 1606 aa20.07■□□□□ 0.8
VPS33B-208ENST00000574755 CDC42BPBQ9Y5S2 1711 aa20.06■□□□□ 0.8
VPS33B-208ENST00000574755 FOXD1Q16676 465 aa20.06■□□□□ 0.8
VPS33B-208ENST00000574755 SHANK2Q9UPX8 1470 aa20.06■□□□□ 0.8
VPS33B-208ENST00000574755 KDM5BQ9UGL1 1544 aa20.05■□□□□ 0.8
VPS33B-208ENST00000574755 SLC4A1APQ9BWU0 796 aaKnown RBP20.04■□□□□ 0.8
VPS33B-208ENST00000574755 C9orf84Q5VXU9 1444 aa20.03■□□□□ 0.8
VPS33B-208ENST00000574755 SCAF1Q9H7N4 1312 aaKnown RBP20.02■□□□□ 0.8
VPS33B-208ENST00000574755 TTC37Q6PGP7 1564 aa20.02■□□□□ 0.79
VPS33B-208ENST00000574755 TSPY4P0CV99 314 aa20.01■□□□□ 0.79
VPS33B-208ENST00000574755 TSPY10P0CW01 314 aa20.01■□□□□ 0.79
VPS33B-208ENST00000574755 ARHGEF5Q12774 1597 aa20.01■□□□□ 0.79
VPS33B-208ENST00000574755 SAMD9LQ8IVG5 1584 aa20.01■□□□□ 0.79
VPS33B-208ENST00000574755 ANKRD50Q9ULJ7 1429 aa20.01■□□□□ 0.79
VPS33B-208ENST00000574755 HIRIP3Q9BW71 556 aaPredicted RBP20■□□□□ 0.79
VPS33B-208ENST00000574755 ANKRD30BQ9BXX2 1392 aa20■□□□□ 0.79
VPS33B-208ENST00000574755 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP20■□□□□ 0.79
VPS33B-208ENST00000574755 HNRNPMP52272 730 aaKnown RBP eCLIP20■□□□□ 0.79
VPS33B-208ENST00000574755 PZPP20742 1482 aa19.99■□□□□ 0.79
VPS33B-208ENST00000574755 ZCCHC11Q5TAX3 1644 aaKnown RBP19.99■□□□□ 0.79
VPS33B-208ENST00000574755 MBD5Q9P267 1494 aa19.98■□□□□ 0.79
VPS33B-208ENST00000574755 MYO5CQ9NQX4 1742 aa19.97■□□□□ 0.79
VPS33B-208ENST00000574755 ARHGAP5Q13017 1502 aa19.97■□□□□ 0.79
VPS33B-208ENST00000574755 UHRF1BP1LA0JNW5 1464 aa19.97■□□□□ 0.79
VPS33B-208ENST00000574755 RPRD2Q5VT52 1461 aaKnown RBP19.97■□□□□ 0.79
VPS33B-208ENST00000574755 CCDC141Q6ZP82 1450 aa19.96■□□□□ 0.79
VPS33B-208ENST00000574755 DDX10Q13206 875 aaKnown RBP19.95■□□□□ 0.78
VPS33B-208ENST00000574755 KCNH8Q96L42 1107 aa19.94■□□□□ 0.78
VPS33B-208ENST00000574755 L3MBTL2Q969R5 705 aa19.93■□□□□ 0.78
VPS33B-208ENST00000574755 SYCP2Q9BX26 1530 aa19.93■□□□□ 0.78
VPS33B-208ENST00000574755 RSPH4AQ5TD94 716 aa19.93■□□□□ 0.78
VPS33B-208ENST00000574755 KIF15Q9NS87 1388 aa19.93■□□□□ 0.78
VPS33B-208ENST00000574755 KIAA1107Q9UPP5 1409 aa19.91■□□□□ 0.78
VPS33B-208ENST00000574755 TEX14Q8IWB6 1497 aa19.89■□□□□ 0.77
VPS33B-208ENST00000574755 NUP155O75694 1391 aa19.88■□□□□ 0.77
VPS33B-208ENST00000574755 PKD2Q13563 968 aa19.88■□□□□ 0.77
VPS33B-208ENST00000574755 PLEKHH2Q8IVE3 1493 aa19.87■□□□□ 0.77
VPS33B-208ENST00000574755 KDM5DQ9BY66 1539 aa19.86■□□□□ 0.77
VPS33B-208ENST00000574755 MAST1Q9Y2H9 1570 aa19.85■□□□□ 0.77
VPS33B-208ENST00000574755 PLCH2O75038 1416 aa19.84■□□□□ 0.77
VPS33B-208ENST00000574755 GTF3C3Q9Y5Q9 886 aa19.82■□□□□ 0.76
VPS33B-208ENST00000574755 HSPA5P11021 654 aaKnown RBP19.81■□□□□ 0.76
VPS33B-208ENST00000574755 EIF4G2P78344 907 aaKnown RBP eCLIP19.81■□□□□ 0.76
VPS33B-208ENST00000574755 EFCAB2Q5VUJ9 269 aa19.8■□□□□ 0.76
VPS33B-208ENST00000574755 PLXNC1O60486 1568 aa19.8■□□□□ 0.76
VPS33B-208ENST00000574755 ARHGEF12Q9NZN5 1544 aa19.79■□□□□ 0.76
VPS33B-208ENST00000574755 NBPF8Q3BBV2 869 aa19.79■□□□□ 0.76
VPS33B-208ENST00000574755 ABCC1P33527 1531 aa19.77■□□□□ 0.76
VPS33B-208ENST00000574755 WDR7Q9Y4E6 1490 aa19.76■□□□□ 0.75
VPS33B-208ENST00000574755 FAM135AQ9P2D6 1515 aa19.76■□□□□ 0.75
VPS33B-208ENST00000574755 ANP32CO43423 234 aa19.75■□□□□ 0.75
VPS33B-208ENST00000574755 OSCARQ8IYS5 282 aa19.74■□□□□ 0.75
VPS33B-208ENST00000574755 UNC13BO14795 1591 aa19.74■□□□□ 0.75
VPS33B-208ENST00000574755 ARAP3Q8WWN8 1544 aa19.73■□□□□ 0.75
VPS33B-208ENST00000574755 DUOX2Q9NRD8 1548 aa19.72■□□□□ 0.75
VPS33B-208ENST00000574755 WASHC2AQ641Q2 1341 aa19.71■□□□□ 0.75
VPS33B-208ENST00000574755 TRAPPC8Q9Y2L5 1435 aa19.7■□□□□ 0.74
VPS33B-208ENST00000574755 GRWD1Q9BQ67 446 aaKnown RBP eCLIP19.69■□□□□ 0.74
VPS33B-208ENST00000574755 ABCA9Q8IUA7 1624 aa19.68■□□□□ 0.74
VPS33B-208ENST00000574755 ZNF326Q5BKZ1 582 aaKnown RBP19.68■□□□□ 0.74
VPS33B-208ENST00000574755 ERBINQ96RT1 1412 aa19.68■□□□□ 0.74
VPS33B-208ENST00000574755 IQGAP3Q86VI3 1631 aa19.67■□□□□ 0.74
VPS33B-208ENST00000574755 ASXL2Q76L83 1435 aa19.66■□□□□ 0.74
VPS33B-208ENST00000574755 FANCAO15360 1455 aa19.65■□□□□ 0.74
VPS33B-208ENST00000574755 SPATA31E1Q6ZUB1 1445 aa19.65■□□□□ 0.74
VPS33B-208ENST00000574755 CCER2I3L3R5 266 aa19.65■□□□□ 0.74
VPS33B-208ENST00000574755 SPAG9O60271 1321 aaKnown RBP19.64■□□□□ 0.73
VPS33B-208ENST00000574755 POLR1AO95602 1720 aaPredicted RBP19.63■□□□□ 0.73
VPS33B-208ENST00000574755 AFAP1Q8N556 730 aa19.63■□□□□ 0.73
VPS33B-208ENST00000574755 MAGI2Q86UL8 1455 aa19.62■□□□□ 0.73
VPS33B-208ENST00000574755 ZFYVE16Q7Z3T8 1539 aa19.62■□□□□ 0.73
VPS33B-208ENST00000574755 CCDC144AA2RUR9 1427 aa19.62■□□□□ 0.73
VPS33B-208ENST00000574755 UHRF1BP1Q6BDS2 1440 aa19.62■□□□□ 0.73
VPS33B-208ENST00000574755 CCDC7Q96M83 1385 aa19.62■□□□□ 0.73
VPS33B-208ENST00000574755 RTEL1-TNFRSF6BF6WH68 1400 aa19.62■□□□□ 0.73
VPS33B-208ENST00000574755 C11orf95C9JLR9 678 aaPredicted RBP19.61■□□□□ 0.73
VPS33B-208ENST00000574755 NPM1P06748 294 aaKnown RBP eCLIP19.61■□□□□ 0.73
Retrieved 100 of 20,778 RNA–protein pairs in 40.9 ms