RNA–Protein interactions for RNA: ENST00000571212.1

KARSP3-201, Transcript of lysyl-tRNA synthetase pseudogene 3, humanhuman

BASIC

Gene KARSP3, Length 1,504 nt, Biotype unprocessed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
KARSP3-201ENST00000571212 CDAN1Q8IWY9 1227 aa11.8□□□□□ -0.52
KARSP3-201ENST00000571212 ZNF710Q8N1W2 664 aa11.8□□□□□ -0.52
KARSP3-201ENST00000571212 RTN4Q9NQC3 1192 aaKnown RBP11.8□□□□□ -0.52
KARSP3-201ENST00000571212 KIF3CO14782 793 aa11.79□□□□□ -0.52
KARSP3-201ENST00000571212 EMP3P54852 163 aa11.78□□□□□ -0.52
KARSP3-201ENST00000571212 PLSCR2Q9NRY7 297 aa11.78□□□□□ -0.52
KARSP3-201ENST00000571212 POTEB3A0JP26 581 aa11.76□□□□□ -0.53
KARSP3-201ENST00000571212 POTEBQ6S5H4 581 aa11.76□□□□□ -0.53
KARSP3-201ENST00000571212 PCDH10Q9P2E7 1040 aa11.76□□□□□ -0.53
KARSP3-201ENST00000571212 FAM205CA6NFA0 338 aa11.75□□□□□ -0.53
KARSP3-201ENST00000571212 HOXB1P14653 301 aaPredicted RBP11.75□□□□□ -0.53
KARSP3-201ENST00000571212 GTPBP6O43824 516 aaPredicted RBP11.73□□□□□ -0.53
KARSP3-201ENST00000571212 AMER1Q5JTC6 1135 aaPredicted RBP11.73□□□□□ -0.53
KARSP3-201ENST00000571212 TMC2Q8TDI7 906 aa11.73□□□□□ -0.53
KARSP3-201ENST00000571212 RIMBP2O15034 1052 aa11.71□□□□□ -0.53
KARSP3-201ENST00000571212 HS3ST6Q96QI5 342 aa11.71□□□□□ -0.53
KARSP3-201ENST00000571212 NISCHQ9Y2I1 1504 aa11.71□□□□□ -0.54
KARSP3-201ENST00000571212 GPR153Q6NV75 609 aa11.7□□□□□ -0.54
KARSP3-201ENST00000571212 KHSRPQ92945 711 aaKnown RBP eCLIP11.7□□□□□ -0.54
KARSP3-201ENST00000571212 ARSIQ5FYB1 569 aa11.7□□□□□ -0.54
KARSP3-201ENST00000571212 RYDENQ9NUL5 291 aaKnown RBP11.67□□□□□ -0.54
KARSP3-201ENST00000571212 ZSWIM6Q9HCJ5 1215 aa11.65□□□□□ -0.54
KARSP3-201ENST00000571212 ERBB3P21860 1342 aa11.65□□□□□ -0.54
KARSP3-201ENST00000571212 GPHNQ9NQX3 736 aaPredicted RBP11.63□□□□□ -0.55
KARSP3-201ENST00000571212 DSG2Q14126 1118 aa11.62□□□□□ -0.55
KARSP3-201ENST00000571212 VARS2Q5ST30 1063 aaKnown RBP11.61□□□□□ -0.55
KARSP3-201ENST00000571212 PLPP6Q8IY26 295 aa11.61□□□□□ -0.55
KARSP3-201ENST00000571212 FOXK1P85037 733 aa11.6□□□□□ -0.55
KARSP3-201ENST00000571212 NUDT7P0C024 238 aa11.59□□□□□ -0.55
KARSP3-201ENST00000571212 KRTAP3-3Q9BYR6 98 aa11.59□□□□□ -0.55
KARSP3-201ENST00000571212 KRTAP3-2Q9BYR7 98 aa11.59□□□□□ -0.55
KARSP3-201ENST00000571212 PCDHGA4Q9Y5G9 962 aa11.59□□□□□ -0.55
KARSP3-201ENST00000571212 NCKAP5LQ9HCH0 1330 aa11.58□□□□□ -0.56
KARSP3-201ENST00000571212 SLC34A2O95436 690 aa11.57□□□□□ -0.56
KARSP3-201ENST00000571212 CRISPLD2Q9H0B8 497 aa11.57□□□□□ -0.56
KARSP3-201ENST00000571212 BBXQ8WY36 941 aaPredicted RBP11.56□□□□□ -0.56
KARSP3-201ENST00000571212 CADPS2Q86UW7 1296 aa11.54□□□□□ -0.56
KARSP3-201ENST00000571212 ZNF316A6NFI3 1004 aaPredicted RBP11.53□□□□□ -0.56
KARSP3-201ENST00000571212 LHX6Q9UPM6 363 aa11.51□□□□□ -0.57
KARSP3-201ENST00000571212 PDE4AP27815 886 aa11.5□□□□□ -0.57
KARSP3-201ENST00000571212 PPP1R15BQ5SWA1 713 aa11.5□□□□□ -0.57
KARSP3-201ENST00000571212 SPNS2Q8IVW8 549 aa11.5□□□□□ -0.57
KARSP3-201ENST00000571212 PTCD2Q8WV60 388 aaKnown RBP11.5□□□□□ -0.57
KARSP3-201ENST00000571212 LARP6Q9BRS8 491 aaKnown RBP11.5□□□□□ -0.57
KARSP3-201ENST00000571212 ZNF687Q8N1G0 1237 aa11.49□□□□□ -0.57
KARSP3-201ENST00000571212 UPF1Q92900 1129 aaKnown RBP eCLIP11.49□□□□□ -0.57
KARSP3-201ENST00000571212 KDM4FA0A1W2PPD8 638 aa11.46□□□□□ -0.57
KARSP3-201ENST00000571212 SPRYD3Q8NCJ5 442 aa11.45□□□□□ -0.58
KARSP3-201ENST00000571212 DDX27Q96GQ7 796 aaKnown RBP11.44□□□□□ -0.58
KARSP3-201ENST00000571212 OXER1Q8TDS5 423 aa11.43□□□□□ -0.58
KARSP3-201ENST00000571212 CFAP44Q96MT7 982 aa11.43□□□□□ -0.58
KARSP3-201ENST00000571212 ZBTB4Q9P1Z0 1013 aaPredicted RBP11.43□□□□□ -0.58
KARSP3-201ENST00000571212 MMRN1Q13201 1228 aa11.42□□□□□ -0.58
KARSP3-201ENST00000571212 PAXIP1Q6ZW49 1069 aaPredicted RBP11.42□□□□□ -0.58
KARSP3-201ENST00000571212 MFSD10Q14728 455 aa11.41□□□□□ -0.58
KARSP3-201ENST00000571212 TBC1D12O60347 775 aa11.4□□□□□ -0.58
KARSP3-201ENST00000571212 POTEEQ6S8J3 1075 aa11.4□□□□□ -0.58
KARSP3-201ENST00000571212 AXIN2Q9Y2T1 843 aa11.4□□□□□ -0.59
KARSP3-201ENST00000571212 EMILIN3Q9NT22 766 aa11.37□□□□□ -0.59
KARSP3-201ENST00000571212 ANKRD13DQ6ZTN6 518 aa11.35□□□□□ -0.59
KARSP3-201ENST00000571212 LSM11P83369 360 aaKnown RBP eCLIP11.31□□□□□ -0.6
KARSP3-201ENST00000571212 EVI5O60447 810 aa11.3□□□□□ -0.6
KARSP3-201ENST00000571212 MAP3K9P80192 1104 aa11.3□□□□□ -0.6
KARSP3-201ENST00000571212 PSDA5PKW4 1024 aaPredicted RBP11.29□□□□□ -0.6
KARSP3-201ENST00000571212 PSEN2P49810 448 aa11.29□□□□□ -0.6
KARSP3-201ENST00000571212 PBX2P40425 430 aa11.28□□□□□ -0.6
KARSP3-201ENST00000571212 PPP4R3BQ5MIZ7 849 aa11.28□□□□□ -0.6
KARSP3-201ENST00000571212 ZNF454Q8N9F8 522 aa11.27□□□□□ -0.61
KARSP3-201ENST00000571212 ANO8Q9HCE9 1232 aaPredicted RBP11.27□□□□□ -0.61
KARSP3-201ENST00000571212 ARHGAP33O14559 1287 aa11.26□□□□□ -0.61
KARSP3-201ENST00000571212 CAMK2BQ13554 666 aa11.25□□□□□ -0.61
KARSP3-201ENST00000571212 DMRTA1Q5VZB9 504 aa11.25□□□□□ -0.61
KARSP3-201ENST00000571212 DPYSL4O14531 572 aa11.23□□□□□ -0.61
KARSP3-201ENST00000571212 FOSBP53539 338 aa11.23□□□□□ -0.61
KARSP3-201ENST00000571212 MYT1LQ9UL68 1186 aa11.23□□□□□ -0.61
KARSP3-201ENST00000571212 KCNK17Q96T54 332 aa11.22□□□□□ -0.61
KARSP3-201ENST00000571212 RNF166Q96A37 237 aaPredicted RBP11.2□□□□□ -0.62
KARSP3-201ENST00000571212 TSHZ2Q9NRE2 1034 aa11.19□□□□□ -0.62
KARSP3-201ENST00000571212 ADGRD1Q6QNK2 874 aa11.19□□□□□ -0.62
KARSP3-201ENST00000571212 JPH4Q96JJ6 628 aa11.18□□□□□ -0.62
KARSP3-201ENST00000571212 ADAM33Q9BZ11 813 aa11.18□□□□□ -0.62
KARSP3-201ENST00000571212 BCL2L12Q9HB09 334 aa11.17□□□□□ -0.62
KARSP3-201ENST00000571212 PCDHGA10Q9Y5H3 936 aa11.16□□□□□ -0.62
KARSP3-201ENST00000571212 ZDHHC16Q969W1 377 aa11.15□□□□□ -0.62
KARSP3-201ENST00000571212 WDR70Q9NW82 654 aa11.15□□□□□ -0.62
KARSP3-201ENST00000571212 E2F4Q16254 413 aa11.14□□□□□ -0.63
KARSP3-201ENST00000571212 PTGER2P43116 358 aa11.13□□□□□ -0.63
KARSP3-201ENST00000571212 PTPREP23469 700 aa11.12□□□□□ -0.63
KARSP3-201ENST00000571212 TK2O00142 265 aa11.11□□□□□ -0.63
KARSP3-201ENST00000571212 HRO43593 1189 aa11.11□□□□□ -0.63
KARSP3-201ENST00000571212 DDX12PQ92771 950 aa11.11□□□□□ -0.63
KARSP3-201ENST00000571212 KCNH8Q96L42 1107 aa11.11□□□□□ -0.63
KARSP3-201ENST00000571212 VPS9D1Q9Y2B5 631 aa11.09□□□□□ -0.63
KARSP3-201ENST00000571212 PHF14O94880 888 aa11.09□□□□□ -0.63
KARSP3-201ENST00000571212 TYW1BQ6NUM6 668 aa11.07□□□□□ -0.64
KARSP3-201ENST00000571212 COL9A1P20849 921 aa11.06□□□□□ -0.64
KARSP3-201ENST00000571212 PDIA6Q15084 440 aa11.06□□□□□ -0.64
KARSP3-201ENST00000571212 RBM33Q96EV2 1170 aaKnown RBP11.06□□□□□ -0.64
KARSP3-201ENST00000571212 ZBED2Q9BTP6 218 aa11.06□□□□□ -0.64
KARSP3-201ENST00000571212 FBXW7Q969H0 707 aa11.03□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 33.9 ms