RNA–Protein interactions for RNA: ENST00000570296.1

CLK3-227, Transcript of CDC like kinase 3, humanhuman

TSL 5

Gene CLK3, Length 916 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-227ENST00000570296 NUP153P49790 1475 aaKnown RBP31.24■■■□□ 2.59
CLK3-227ENST00000570296 ARHGEF12Q9NZN5 1544 aa31.24■■■□□ 2.59
CLK3-227ENST00000570296 HECW1Q76N89 1606 aa31.2■■■□□ 2.59
CLK3-227ENST00000570296 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP31.17■■■□□ 2.583e-12■□□□□ 9.1
CLK3-227ENST00000570296 SETD1BQ9UPS6 1966 aaKnown RBP31.16■■■□□ 2.58
CLK3-227ENST00000570296 PLEKHD1A6NEE1 506 aa31.16■■■□□ 2.58
CLK3-227ENST00000570296 PTPRTO14522 1441 aa31.13■■■□□ 2.57
CLK3-227ENST00000570296 UHRF1BP1Q6BDS2 1440 aa31.13■■■□□ 2.57
CLK3-227ENST00000570296 IQSEC2Q5JU85 1478 aa31.12■■■□□ 2.57
CLK3-227ENST00000570296 ATP10AO60312 1499 aa31.11■■■□□ 2.57
CLK3-227ENST00000570296 C9orf84Q5VXU9 1444 aa31.1■■■□□ 2.57
CLK3-227ENST00000570296 CEBPAP49715 358 aaPredicted RBP31.07■■■□□ 2.56
CLK3-227ENST00000570296 LTBP4Q8N2S1 1624 aa31.06■■■□□ 2.56
CLK3-227ENST00000570296 SCAPERQ9BY12 1400 aa31.05■■■□□ 2.56
CLK3-227ENST00000570296 PLCH2O75038 1416 aa30.97■■■□□ 2.55
CLK3-227ENST00000570296 C3P01024 1663 aa30.9■■■□□ 2.54
CLK3-227ENST00000570296 NCOA1Q15788 1441 aa30.87■■■□□ 2.53
CLK3-227ENST00000570296 ZNF518AQ6AHZ1 1483 aa30.86■■■□□ 2.53
CLK3-227ENST00000570296 MYO5CQ9NQX4 1742 aa30.85■■■□□ 2.53
CLK3-227ENST00000570296 REREQ9P2R6 1566 aa30.85■■■□□ 2.53
CLK3-227ENST00000570296 KDM5CP41229 1560 aa30.83■■■□□ 2.53
CLK3-227ENST00000570296 EFCAB2Q5VUJ9 269 aa30.83■■■□□ 2.53
CLK3-227ENST00000570296 TRAPPC8Q9Y2L5 1435 aa30.82■■■□□ 2.52
CLK3-227ENST00000570296 DIP2CQ9Y2E4 1556 aa30.79■■■□□ 2.52
CLK3-227ENST00000570296 CDK13Q14004 1512 aaKnown RBP30.79■■■□□ 2.52
CLK3-227ENST00000570296 RANGAP1P46060 587 aaPredicted RBP30.76■■■□□ 2.51
CLK3-227ENST00000570296 CSRNP3Q8WYN3 585 aa30.76■■■□□ 2.51
CLK3-227ENST00000570296 UBAP1LF5GYI3 381 aa30.74■■■□□ 2.51
CLK3-227ENST00000570296 AGLP35573 1532 aa30.73■■■□□ 2.51
CLK3-227ENST00000570296 ESF1Q9H501 851 aaKnown RBP30.73■■■□□ 2.51
CLK3-227ENST00000570296 CAMSAP1Q5T5Y3 1602 aa30.71■■■□□ 2.51
CLK3-227ENST00000570296 ABCA6Q8N139 1617 aa30.7■■■□□ 2.51
CLK3-227ENST00000570296 AFAP1Q8N556 730 aa30.7■■■□□ 2.51
CLK3-227ENST00000570296 CNTLNQ9NXG0 1405 aa30.69■■■□□ 2.5
CLK3-227ENST00000570296 MLH3Q9UHC1 1453 aa30.67■■■□□ 2.5
CLK3-227ENST00000570296 MYT1LQ9UL68 1186 aa30.66■■■□□ 2.5
CLK3-227ENST00000570296 ARHGAP5Q13017 1502 aa30.65■■■□□ 2.5
CLK3-227ENST00000570296 ZNF335Q9H4Z2 1342 aaPredicted RBP30.65■■■□□ 2.5
CLK3-227ENST00000570296 NPATQ14207 1427 aa30.64■■■□□ 2.5
CLK3-227ENST00000570296 MED1Q15648 1581 aaPredicted RBP30.63■■■□□ 2.49
CLK3-227ENST00000570296 KIF14Q15058 1648 aa30.62■■■□□ 2.49
CLK3-227ENST00000570296 MROH2AA6NES4 1674 aa30.6■■■□□ 2.49
CLK3-227ENST00000570296 CDK11AQ9UQ88 783 aaPredicted RBP30.58■■■□□ 2.49
CLK3-227ENST00000570296 NCKAP5LQ9HCH0 1330 aa30.56■■■□□ 2.48
CLK3-227ENST00000570296 PLA2R1Q13018 1463 aa30.55■■■□□ 2.48
CLK3-227ENST00000570296 PKD2Q13563 968 aa30.54■■■□□ 2.48
CLK3-227ENST00000570296 ZNF142P52746 1687 aaPredicted RBP30.53■■■□□ 2.48
CLK3-227ENST00000570296 CDC42BPBQ9Y5S2 1711 aa30.51■■■□□ 2.47
CLK3-227ENST00000570296 TROQ12816 1431 aaPredicted RBP30.51■■■□□ 2.47
CLK3-227ENST00000570296 EEA1Q15075 1411 aa30.5■■■□□ 2.47
CLK3-227ENST00000570296 TCOF1Q13428 1488 aaKnown RBP30.5■■■□□ 2.47
CLK3-227ENST00000570296 KIDINS220Q9ULH0 1771 aa30.49■■■□□ 2.47
CLK3-227ENST00000570296 SUPT6HQ7KZ85 1726 aaKnown RBP30.49■■■□□ 2.47
CLK3-227ENST00000570296 CLIP1P30622 1438 aa30.48■■■□□ 2.47
CLK3-227ENST00000570296 ABCC1P33527 1531 aa30.48■■■□□ 2.47
CLK3-227ENST00000570296 FMN1Q68DA7 1419 aa30.47■■■□□ 2.47
CLK3-227ENST00000570296 ITSN2Q9NZM3 1697 aa30.47■■■□□ 2.47
CLK3-227ENST00000570296 HSPA1LP34931 641 aa30.47■■■□□ 2.47
CLK3-227ENST00000570296 MYO3AQ8NEV4 1616 aa30.47■■■□□ 2.47
CLK3-227ENST00000570296 ZMYM3Q14202 1370 aa30.46■■■□□ 2.47
CLK3-227ENST00000570296 ATP1B4Q9UN42 357 aaPredicted RBP30.43■■■□□ 2.46
CLK3-227ENST00000570296 PREX2Q70Z35 1606 aa30.43■■■□□ 2.46
CLK3-227ENST00000570296 CEP170BQ9Y4F5 1589 aaPredicted RBP30.42■■■□□ 2.46
CLK3-227ENST00000570296 PPP6R1Q9UPN7 881 aa30.4■■■□□ 2.46
CLK3-227ENST00000570296 SCAF1Q9H7N4 1312 aaKnown RBP30.39■■■□□ 2.46
CLK3-227ENST00000570296 TOM1O60784 492 aa30.37■■■□□ 2.45
CLK3-227ENST00000570296 PHF23Q9BUL5 403 aaPredicted RBP30.36■■■□□ 2.45
CLK3-227ENST00000570296 CLTCQ00610 1675 aaKnown RBP30.36■■■□□ 2.45
CLK3-227ENST00000570296 PIP4K2BP78356 416 aa30.35■■■□□ 2.45
CLK3-227ENST00000570296 CPS1P31327 1500 aa30.34■■■□□ 2.45
CLK3-227ENST00000570296 PTPRKQ15262 1439 aa30.33■■■□□ 2.45
CLK3-227ENST00000570296 LRRIQ1Q96JM4 1722 aa30.3■■■□□ 2.44
CLK3-227ENST00000570296 SAMD9LQ8IVG5 1584 aa30.3■■■□□ 2.44
CLK3-227ENST00000570296 POLR1AO95602 1720 aaPredicted RBP30.25■■■□□ 2.43
CLK3-227ENST00000570296 CDC42BPAQ5VT25 1732 aa30.25■■■□□ 2.43
CLK3-227ENST00000570296 A2ML1A8K2U0 1454 aa30.24■■■□□ 2.43
CLK3-227ENST00000570296 ARHGAP35Q9NRY4 1499 aa30.24■■■□□ 2.43
CLK3-227ENST00000570296 SHANK2Q9UPX8 1470 aa30.24■■■□□ 2.43
CLK3-227ENST00000570296 PLXNC1O60486 1568 aa30.24■■■□□ 2.43
CLK3-227ENST00000570296 DNMT1P26358 1616 aaKnown RBP30.22■■■□□ 2.43
CLK3-227ENST00000570296 SPAG9O60271 1321 aaKnown RBP30.2■■■□□ 2.42
CLK3-227ENST00000570296 NEURL4Q96JN8 1562 aa30.19■■■□□ 2.42
CLK3-227ENST00000570296 ATP7AQ04656 1500 aa30.17■■■□□ 2.42
CLK3-227ENST00000570296 ALKQ9UM73 1620 aa30.16■■■□□ 2.42
CLK3-227ENST00000570296 SYCP2Q9BX26 1530 aa30.16■■■□□ 2.42
CLK3-227ENST00000570296 A2MP01023 1474 aa30.15■■■□□ 2.42
CLK3-227ENST00000570296 INO80Q9ULG1 1556 aaPredicted RBP30.13■■■□□ 2.41
CLK3-227ENST00000570296 CCDC18Q5T9S5 1454 aa30.12■■■□□ 2.41
CLK3-227ENST00000570296 VWDEQ8N2E2 1590 aa30.11■■■□□ 2.41
CLK3-227ENST00000570296 GGT6Q6P531 493 aa30.1■■■□□ 2.41
CLK3-227ENST00000570296 UBTFP17480 764 aaKnown RBP30.06■■■□□ 2.4
CLK3-227ENST00000570296 ZNF777Q9ULD5 760 aaPredicted RBP30.06■■■□□ 2.4
CLK3-227ENST00000570296 ADGBQ8N7X0 1667 aa30.05■■■□□ 2.4
CLK3-227ENST00000570296 KIAA1107Q9UPP5 1409 aa30.05■■■□□ 2.4
CLK3-227ENST00000570296 HNRNPMP52272 730 aaKnown RBP eCLIP30.03■■■□□ 2.41e-10■■■□□ 15.8
CLK3-227ENST00000570296 PLEKHH2Q8IVE3 1493 aa30.03■■■□□ 2.4
CLK3-227ENST00000570296 CASKIN1Q8WXD9 1431 aa30.01■■■□□ 2.39
CLK3-227ENST00000570296 ANKLE2Q86XL3 938 aa30■■■□□ 2.39
CLK3-227ENST00000570296 GPATCH8Q9UKJ3 1502 aaKnown RBP30■■■□□ 2.39
CLK3-227ENST00000570296 TNRQ92752 1358 aa30■■■□□ 2.39
Retrieved 100 of 20,778 RNA–protein pairs in 13.6 ms