RNA–Protein interactions for RNA: ENST00000568691.5

VPS9D1-207, Transcript of VPS9 domain containing 1, humanhuman

TSL 3

Gene VPS9D1, Length 838 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS9D1-207ENST00000568691 MAGI2Q86UL8 1455 aa20.43■□□□□ 0.86
VPS9D1-207ENST00000568691 PREX1Q8TCU6 1659 aa20.42■□□□□ 0.86
VPS9D1-207ENST00000568691 LTBP4Q8N2S1 1624 aa20.39■□□□□ 0.86
VPS9D1-207ENST00000568691 CFAP74Q9C0B2 1584 aa20.36■□□□□ 0.85
VPS9D1-207ENST00000568691 PLEKHD1A6NEE1 506 aa20.35■□□□□ 0.85
VPS9D1-207ENST00000568691 DMRT2Q9Y5R5 561 aa20.35■□□□□ 0.85
VPS9D1-207ENST00000568691 ATP10AO60312 1499 aa20.35■□□□□ 0.85
VPS9D1-207ENST00000568691 PTPRTO14522 1441 aa20.35■□□□□ 0.85
VPS9D1-207ENST00000568691 SCAPERQ9BY12 1400 aa20.35■□□□□ 0.85
VPS9D1-207ENST00000568691 FAM9AQ8IZU1 332 aaPredicted RBP20.34■□□□□ 0.85
VPS9D1-207ENST00000568691 C9orf84Q5VXU9 1444 aa20.32■□□□□ 0.84
VPS9D1-207ENST00000568691 UHRF1BP1Q6BDS2 1440 aa20.31■□□□□ 0.84
VPS9D1-207ENST00000568691 PLCH2O75038 1416 aa20.29■□□□□ 0.84
VPS9D1-207ENST00000568691 IQSEC2Q5JU85 1478 aa20.25■□□□□ 0.83
VPS9D1-207ENST00000568691 CDK13Q14004 1512 aaKnown RBP20.24■□□□□ 0.83
VPS9D1-207ENST00000568691 NCOA1Q15788 1441 aa20.22■□□□□ 0.83
VPS9D1-207ENST00000568691 RANGAP1P46060 587 aaPredicted RBP20.22■□□□□ 0.83
VPS9D1-207ENST00000568691 SETD1BQ9UPS6 1966 aaKnown RBP20.22■□□□□ 0.83
VPS9D1-207ENST00000568691 C3P01024 1663 aa20.19■□□□□ 0.82
VPS9D1-207ENST00000568691 AFAP1Q8N556 730 aa20.19■□□□□ 0.82
VPS9D1-207ENST00000568691 KDM5CP41229 1560 aa20.18■□□□□ 0.82
VPS9D1-207ENST00000568691 DIP2CQ9Y2E4 1556 aa20.17■□□□□ 0.82
VPS9D1-207ENST00000568691 CSRNP3Q8WYN3 585 aa20.17■□□□□ 0.82
VPS9D1-207ENST00000568691 TRAPPC8Q9Y2L5 1435 aa20.15■□□□□ 0.82
VPS9D1-207ENST00000568691 REREQ9P2R6 1566 aa20.14■□□□□ 0.81
VPS9D1-207ENST00000568691 EFCAB2Q5VUJ9 269 aa20.14■□□□□ 0.81
VPS9D1-207ENST00000568691 ZNF518AQ6AHZ1 1483 aa20.13■□□□□ 0.81
VPS9D1-207ENST00000568691 ZNF335Q9H4Z2 1342 aaPredicted RBP20.13■□□□□ 0.81
VPS9D1-207ENST00000568691 ABCA6Q8N139 1617 aa20.12■□□□□ 0.81
VPS9D1-207ENST00000568691 UBAP1LF5GYI3 381 aa20.1■□□□□ 0.81
VPS9D1-207ENST00000568691 KIF14Q15058 1648 aa20.09■□□□□ 0.81
VPS9D1-207ENST00000568691 AGLP35573 1532 aa20.09■□□□□ 0.81
VPS9D1-207ENST00000568691 CAMSAP1Q5T5Y3 1602 aa20.09■□□□□ 0.81
VPS9D1-207ENST00000568691 NCKAP5LQ9HCH0 1330 aa20.08■□□□□ 0.81
VPS9D1-207ENST00000568691 MYO5CQ9NQX4 1742 aa20.07■□□□□ 0.8
VPS9D1-207ENST00000568691 MLH3Q9UHC1 1453 aa20.07■□□□□ 0.8
VPS9D1-207ENST00000568691 MED1Q15648 1581 aaPredicted RBP20.04■□□□□ 0.8
VPS9D1-207ENST00000568691 ARHGAP5Q13017 1502 aa20.02■□□□□ 0.79
VPS9D1-207ENST00000568691 HSPA1LP34931 641 aa20.01■□□□□ 0.79
VPS9D1-207ENST00000568691 NPATQ14207 1427 aa20.01■□□□□ 0.79
VPS9D1-207ENST00000568691 CNTLNQ9NXG0 1405 aa19.99■□□□□ 0.79
VPS9D1-207ENST00000568691 TCOF1Q13428 1488 aaKnown RBP19.99■□□□□ 0.79
VPS9D1-207ENST00000568691 TROQ12816 1431 aaPredicted RBP19.98■□□□□ 0.79
VPS9D1-207ENST00000568691 MYT1LQ9UL68 1186 aa19.97■□□□□ 0.79
VPS9D1-207ENST00000568691 ZMYM3Q14202 1370 aa19.96■□□□□ 0.79
VPS9D1-207ENST00000568691 KIDINS220Q9ULH0 1771 aa19.96■□□□□ 0.79
VPS9D1-207ENST00000568691 ABCC1P33527 1531 aa19.96■□□□□ 0.79
VPS9D1-207ENST00000568691 CDC42BPBQ9Y5S2 1711 aa19.96■□□□□ 0.79
VPS9D1-207ENST00000568691 PLA2R1Q13018 1463 aa19.95■□□□□ 0.78
VPS9D1-207ENST00000568691 ESF1Q9H501 851 aaKnown RBP19.94■□□□□ 0.78
VPS9D1-207ENST00000568691 MROH2AA6NES4 1674 aa19.92■□□□□ 0.78
VPS9D1-207ENST00000568691 PKD2Q13563 968 aa19.91■□□□□ 0.78
VPS9D1-207ENST00000568691 ATP1B4Q9UN42 357 aaPredicted RBP19.91■□□□□ 0.78
VPS9D1-207ENST00000568691 ZNF142P52746 1687 aaPredicted RBP19.91■□□□□ 0.78
VPS9D1-207ENST00000568691 PTPRKQ15262 1439 aa19.9■□□□□ 0.78
VPS9D1-207ENST00000568691 MYO3AQ8NEV4 1616 aa19.9■□□□□ 0.78
VPS9D1-207ENST00000568691 ITSN2Q9NZM3 1697 aa19.9■□□□□ 0.78
VPS9D1-207ENST00000568691 LRRIQ1Q96JM4 1722 aa19.89■□□□□ 0.77
VPS9D1-207ENST00000568691 ALKQ9UM73 1620 aa19.89■□□□□ 0.77
VPS9D1-207ENST00000568691 CEP170BQ9Y4F5 1589 aaPredicted RBP19.88■□□□□ 0.77
VPS9D1-207ENST00000568691 ARHGAP35Q9NRY4 1499 aa19.88■□□□□ 0.77
VPS9D1-207ENST00000568691 PIP4K2BP78356 416 aa19.88■□□□□ 0.77
VPS9D1-207ENST00000568691 CDK11AQ9UQ88 783 aaPredicted RBP19.88■□□□□ 0.77
VPS9D1-207ENST00000568691 EEA1Q15075 1411 aa19.87■□□□□ 0.77
VPS9D1-207ENST00000568691 PREX2Q70Z35 1606 aa19.87■□□□□ 0.77
VPS9D1-207ENST00000568691 FMN1Q68DA7 1419 aa19.86■□□□□ 0.77
VPS9D1-207ENST00000568691 PPP6R1Q9UPN7 881 aa19.86■□□□□ 0.77
VPS9D1-207ENST00000568691 SAMD9LQ8IVG5 1584 aa19.85■□□□□ 0.77
VPS9D1-207ENST00000568691 SCAF1Q9H7N4 1312 aaKnown RBP19.83■□□□□ 0.77
VPS9D1-207ENST00000568691 CLIP1P30622 1438 aa19.83■□□□□ 0.76
VPS9D1-207ENST00000568691 CLTCQ00610 1675 aaKnown RBP19.82■□□□□ 0.76
VPS9D1-207ENST00000568691 NEURL4Q96JN8 1562 aa19.81■□□□□ 0.76
VPS9D1-207ENST00000568691 PLXNC1O60486 1568 aa19.8■□□□□ 0.76
VPS9D1-207ENST00000568691 SUPT6HQ7KZ85 1726 aaKnown RBP19.79■□□□□ 0.76
VPS9D1-207ENST00000568691 DNMT1P26358 1616 aaKnown RBP19.78■□□□□ 0.76
VPS9D1-207ENST00000568691 TOM1O60784 492 aa19.78■□□□□ 0.76
VPS9D1-207ENST00000568691 SHANK2Q9UPX8 1470 aa19.78■□□□□ 0.76
VPS9D1-207ENST00000568691 CPS1P31327 1500 aa19.77■□□□□ 0.76
VPS9D1-207ENST00000568691 RGS17Q9UGC6 210 aaPredicted RBP19.77■□□□□ 0.76
VPS9D1-207ENST00000568691 A2ML1A8K2U0 1454 aa19.77■□□□□ 0.76
VPS9D1-207ENST00000568691 CDC42BPAQ5VT25 1732 aa19.76■□□□□ 0.75
VPS9D1-207ENST00000568691 SYCP2Q9BX26 1530 aa19.75■□□□□ 0.75
VPS9D1-207ENST00000568691 VWDEQ8N2E2 1590 aa19.74■□□□□ 0.75
VPS9D1-207ENST00000568691 HNRNPMP52272 730 aaKnown RBP eCLIP19.74■□□□□ 0.75
VPS9D1-207ENST00000568691 PHF23Q9BUL5 403 aaPredicted RBP19.74■□□□□ 0.75
VPS9D1-207ENST00000568691 SPAG9O60271 1321 aaKnown RBP19.74■□□□□ 0.75
VPS9D1-207ENST00000568691 EHMT2Q96KQ7 1210 aa19.73■□□□□ 0.75
VPS9D1-207ENST00000568691 A2MP01023 1474 aa19.73■□□□□ 0.75
VPS9D1-207ENST00000568691 ATP7AQ04656 1500 aa19.72■□□□□ 0.75
VPS9D1-207ENST00000568691 GGT6Q6P531 493 aa19.72■□□□□ 0.75
VPS9D1-207ENST00000568691 INO80Q9ULG1 1556 aaPredicted RBP19.71■□□□□ 0.75
VPS9D1-207ENST00000568691 GPATCH8Q9UKJ3 1502 aaKnown RBP19.7■□□□□ 0.74
VPS9D1-207ENST00000568691 ZNF777Q9ULD5 760 aaPredicted RBP19.69■□□□□ 0.74
VPS9D1-207ENST00000568691 FBXO31Q5XUX0 539 aaPredicted RBP19.68■□□□□ 0.74
VPS9D1-207ENST00000568691 POLR1AO95602 1720 aaPredicted RBP19.67■□□□□ 0.74
VPS9D1-207ENST00000568691 UBTFP17480 764 aaKnown RBP19.66■□□□□ 0.74
VPS9D1-207ENST00000568691 SENP3Q9H4L4 574 aaPredicted RBP19.65■□□□□ 0.74
VPS9D1-207ENST00000568691 CASKIN1Q8WXD9 1431 aa19.65■□□□□ 0.74
VPS9D1-207ENST00000568691 KIAA1107Q9UPP5 1409 aa19.65■□□□□ 0.74
VPS9D1-207ENST00000568691 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP19.64■□□□□ 0.73
Retrieved 100 of 20,778 RNA–protein pairs in 13.4 ms