RNA–Protein interactions for RNA: ENST00000568605.5

CLK3-224, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 1,047 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-224ENST00000568605 FRMPD1Q5SYB0 1578 aa20.61■□□□□ 0.89
CLK3-224ENST00000568605 MAP3K1Q13233 1512 aa20.6■□□□□ 0.89
CLK3-224ENST00000568605 AKNAQ7Z591 1439 aa20.59■□□□□ 0.89
CLK3-224ENST00000568605 ADGRL1O94910 1474 aa20.58■□□□□ 0.89
CLK3-224ENST00000568605 ZMYM4Q5VZL5 1548 aa20.56■□□□□ 0.88
CLK3-224ENST00000568605 DENND4BO75064 1496 aaPredicted RBP20.56■□□□□ 0.88
CLK3-224ENST00000568605 ABCC1P33527 1531 aa20.54■□□□□ 0.88
CLK3-224ENST00000568605 ARHGEF40Q8TER5 1519 aa20.53■□□□□ 0.88
CLK3-224ENST00000568605 EFCAB2Q5VUJ9 269 aa20.52■□□□□ 0.88
CLK3-224ENST00000568605 SAMD9LQ8IVG5 1584 aa20.51■□□□□ 0.87
CLK3-224ENST00000568605 LRRC9Q6ZRR7 1453 aa20.5■□□□□ 0.87
CLK3-224ENST00000568605 POGZQ7Z3K3 1410 aa20.5■□□□□ 0.87
CLK3-224ENST00000568605 GPATCH8Q9UKJ3 1502 aaKnown RBP20.48■□□□□ 0.87
CLK3-224ENST00000568605 CCNB3Q8WWL7 1395 aa20.48■□□□□ 0.87
CLK3-224ENST00000568605 HECW2Q9P2P5 1572 aa20.48■□□□□ 0.87
CLK3-224ENST00000568605 NCOA2Q15596 1464 aa20.48■□□□□ 0.87
CLK3-224ENST00000568605 ZNF518AQ6AHZ1 1483 aa20.48■□□□□ 0.87
CLK3-224ENST00000568605 KDM5CP41229 1560 aa20.47■□□□□ 0.87
CLK3-224ENST00000568605 SCAPERQ9BY12 1400 aa20.47■□□□□ 0.87
CLK3-224ENST00000568605 APLP2Q06481 763 aa20.47■□□□□ 0.87
CLK3-224ENST00000568605 ZFYVE16Q7Z3T8 1539 aa20.46■□□□□ 0.87
CLK3-224ENST00000568605 PLEKHH2Q8IVE3 1493 aa20.45■□□□□ 0.86
CLK3-224ENST00000568605 MAGI2Q86UL8 1455 aa20.44■□□□□ 0.86
CLK3-224ENST00000568605 SYCP2Q9BX26 1530 aa20.44■□□□□ 0.86
CLK3-224ENST00000568605 RAPGEF3O95398 923 aa20.42■□□□□ 0.86
CLK3-224ENST00000568605 CFDP1Q9UEE9 299 aaPredicted RBP20.38■□□□□ 0.85
CLK3-224ENST00000568605 KIDINS220Q9ULH0 1771 aa20.37■□□□□ 0.85
CLK3-224ENST00000568605 ABCA6Q8N139 1617 aa20.37■□□□□ 0.85
CLK3-224ENST00000568605 BCORL1Q5H9F3 1711 aa20.36■□□□□ 0.85
CLK3-224ENST00000568605 KIAA1107Q9UPP5 1409 aa20.36■□□□□ 0.85
CLK3-224ENST00000568605 INO80Q9ULG1 1556 aaPredicted RBP20.35■□□□□ 0.85
CLK3-224ENST00000568605 ARHGEF12Q9NZN5 1544 aa20.35■□□□□ 0.85
CLK3-224ENST00000568605 DIP2CQ9Y2E4 1556 aa20.34■□□□□ 0.85
CLK3-224ENST00000568605 ZNF777Q9ULD5 760 aaPredicted RBP20.34■□□□□ 0.85
CLK3-224ENST00000568605 CAMSAP2Q08AD1 1489 aa20.34■□□□□ 0.85
CLK3-224ENST00000568605 ADGBQ8N7X0 1667 aa20.33■□□□□ 0.85
CLK3-224ENST00000568605 MLH3Q9UHC1 1453 aa20.33■□□□□ 0.85
CLK3-224ENST00000568605 REREQ9P2R6 1566 aa20.33■□□□□ 0.84
CLK3-224ENST00000568605 MYOM3Q5VTT5 1437 aa20.32■□□□□ 0.84
CLK3-224ENST00000568605 SIGLEC1Q9BZZ2 1709 aa20.31■□□□□ 0.84
CLK3-224ENST00000568605 ARHGEF5Q12774 1597 aa20.31■□□□□ 0.84
CLK3-224ENST00000568605 YEATS2Q9ULM3 1422 aa20.31■□□□□ 0.84
CLK3-224ENST00000568605 TRAPPC8Q9Y2L5 1435 aa20.31■□□□□ 0.84
CLK3-224ENST00000568605 ATP7AQ04656 1500 aa20.31■□□□□ 0.84
CLK3-224ENST00000568605 FER1L4A9Z1Z3 1794 aa20.31■□□□□ 0.84
CLK3-224ENST00000568605 C9orf84Q5VXU9 1444 aa20.3■□□□□ 0.84
CLK3-224ENST00000568605 CROCC2H7BZ55 1655 aa20.3■□□□□ 0.84
CLK3-224ENST00000568605 ADAMTSL3P82987 1691 aa20.29■□□□□ 0.84
CLK3-224ENST00000568605 PTPN23Q9H3S7 1636 aa20.29■□□□□ 0.84
CLK3-224ENST00000568605 KANK4Q5T7N3 995 aaPredicted RBP20.29■□□□□ 0.84
CLK3-224ENST00000568605 MIA2Q96PC5 1412 aa20.28■□□□□ 0.84
CLK3-224ENST00000568605 ATP10AO60312 1499 aa20.28■□□□□ 0.84
CLK3-224ENST00000568605 CCDC141Q6ZP82 1450 aa20.27■□□□□ 0.84
CLK3-224ENST00000568605 MYT1LQ9UL68 1186 aa20.27■□□□□ 0.84
CLK3-224ENST00000568605 MADDQ8WXG6 1647 aa20.25■□□□□ 0.83
CLK3-224ENST00000568605 AEBP2Q6ZN18 517 aaPredicted RBP20.25■□□□□ 0.83
CLK3-224ENST00000568605 AFAP1Q8N556 730 aa20.25■□□□□ 0.83
CLK3-224ENST00000568605 RIMS1Q86UR5 1692 aaKnown RBP20.24■□□□□ 0.83
CLK3-224ENST00000568605 MBD5Q9P267 1494 aa20.23■□□□□ 0.83
CLK3-224ENST00000568605 MAST1Q9Y2H9 1570 aa20.21■□□□□ 0.83
CLK3-224ENST00000568605 HNRNPMP52272 730 aaKnown RBP eCLIP20.21■□□□□ 0.834e-10■■■■■ 38
CLK3-224ENST00000568605 SPAG9O60271 1321 aaKnown RBP20.21■□□□□ 0.83
CLK3-224ENST00000568605 ARID4BQ4LE39 1312 aaPredicted RBP20.21■□□□□ 0.83
CLK3-224ENST00000568605 PLXNC1O60486 1568 aa20.2■□□□□ 0.82
CLK3-224ENST00000568605 DNMT1P26358 1616 aaKnown RBP20.2■□□□□ 0.82
CLK3-224ENST00000568605 AGLP35573 1532 aa20.19■□□□□ 0.82
CLK3-224ENST00000568605 ZNF644Q9H582 1327 aaPredicted RBP20.19■□□□□ 0.82
CLK3-224ENST00000568605 FGD6Q6ZV73 1430 aa20.19■□□□□ 0.82
CLK3-224ENST00000568605 KDM4FA0A1W2PPD8 638 aa20.18■□□□□ 0.82
CLK3-224ENST00000568605 RTEL1-TNFRSF6BF6WH68 1400 aa20.18■□□□□ 0.82
CLK3-224ENST00000568605 RSPH4AQ5TD94 716 aa20.17■□□□□ 0.82
CLK3-224ENST00000568605 TCOF1Q13428 1488 aaKnown RBP20.16■□□□□ 0.82
CLK3-224ENST00000568605 SHANK2Q9UPX8 1470 aa20.13■□□□□ 0.81
CLK3-224ENST00000568605 A2MP01023 1474 aa20.12■□□□□ 0.81
CLK3-224ENST00000568605 MROH2AA6NES4 1674 aa20.11■□□□□ 0.81
CLK3-224ENST00000568605 EIF2AK4Q9P2K8 1649 aaKnown RBP20.11■□□□□ 0.81
CLK3-224ENST00000568605 PTPRMP28827 1452 aa20.09■□□□□ 0.81
CLK3-224ENST00000568605 TSPY4P0CV99 314 aa20.08■□□□□ 0.81
CLK3-224ENST00000568605 TSPY10P0CW01 314 aa20.08■□□□□ 0.81
CLK3-224ENST00000568605 CLTCQ00610 1675 aaKnown RBP20.07■□□□□ 0.8
CLK3-224ENST00000568605 DAPK1P53355 1430 aa20.06■□□□□ 0.8
CLK3-224ENST00000568605 C3P01024 1663 aa20.06■□□□□ 0.8
CLK3-224ENST00000568605 FAM135AQ9P2D6 1515 aa20.03■□□□□ 0.8
CLK3-224ENST00000568605 RNF17Q9BXT8 1623 aaKnown RBP20.03■□□□□ 0.8
CLK3-224ENST00000568605 MLECQ14165 292 aa20.03■□□□□ 0.8
CLK3-224ENST00000568605 ZC3H13Q5T200 1668 aaKnown RBP20.03■□□□□ 0.8
CLK3-224ENST00000568605 DUOX2Q9NRD8 1548 aa20.02■□□□□ 0.8
CLK3-224ENST00000568605 PREX1Q8TCU6 1659 aa20.02■□□□□ 0.8
CLK3-224ENST00000568605 ABCC5O15440 1437 aa20.02■□□□□ 0.79
CLK3-224ENST00000568605 CNTLNQ9NXG0 1405 aa20.01■□□□□ 0.79
CLK3-224ENST00000568605 DHX29Q7Z478 1369 aaKnown RBP19.99■□□□□ 0.79
CLK3-224ENST00000568605 SETD1BQ9UPS6 1966 aaKnown RBP19.99■□□□□ 0.79
CLK3-224ENST00000568605 ESF1Q9H501 851 aaKnown RBP19.98■□□□□ 0.79
CLK3-224ENST00000568605 FAM50AQ14320 339 aaKnown RBP19.97■□□□□ 0.79
CLK3-224ENST00000568605 ADGRL2O95490 1459 aa19.96■□□□□ 0.79
CLK3-224ENST00000568605 DEPDC5O75140 1603 aa19.95■□□□□ 0.78
CLK3-224ENST00000568605 CEP152O94986 1710 aa19.95■□□□□ 0.78
CLK3-224ENST00000568605 KDM5DQ9BY66 1539 aa19.95■□□□□ 0.78
CLK3-224ENST00000568605 ERBINQ96RT1 1412 aa19.94■□□□□ 0.78
CLK3-224ENST00000568605 ANKRD30AQ9BXX3 1397 aa19.94■□□□□ 0.78
Retrieved 100 of 20,778 RNA–protein pairs in 59.7 ms