RNA–Protein interactions for RNA: ENST00000567737.1

SMG1-213, Transcript of SMG1, nonsense mediated mRNA decay associated PI3K related kinase, humanhuman

TSL 3

Gene SMG1, Length 721 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMG1-213ENST00000567737 CFAP74Q9C0B2 1584 aa23.79■■□□□ 1.4
SMG1-213ENST00000567737 PREX1Q8TCU6 1659 aa23.79■■□□□ 1.4
SMG1-213ENST00000567737 SIGLEC1Q9BZZ2 1709 aa23.79■■□□□ 1.4
SMG1-213ENST00000567737 MAGI2Q86UL8 1455 aa23.78■■□□□ 1.4
SMG1-213ENST00000567737 PRXQ9BXM0 1461 aa23.76■■□□□ 1.39
SMG1-213ENST00000567737 PLEKHD1A6NEE1 506 aa23.73■■□□□ 1.39
SMG1-213ENST00000567737 STRCQ7RTU9 1775 aa23.72■■□□□ 1.39
SMG1-213ENST00000567737 ARHGEF12Q9NZN5 1544 aa23.71■■□□□ 1.39
SMG1-213ENST00000567737 NUP153P49790 1475 aaKnown RBP23.71■■□□□ 1.39
SMG1-213ENST00000567737 UHRF1BP1Q6BDS2 1440 aa23.71■■□□□ 1.39
SMG1-213ENST00000567737 CEBPAP49715 358 aaPredicted RBP23.71■■□□□ 1.39
SMG1-213ENST00000567737 HECW1Q76N89 1606 aa23.7■■□□□ 1.38
SMG1-213ENST00000567737 SAMD9Q5K651 1589 aa23.69■■□□□ 1.38
SMG1-213ENST00000567737 PTPRTO14522 1441 aa23.67■■□□□ 1.38
SMG1-213ENST00000567737 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP23.67■■□□□ 1.38
SMG1-213ENST00000567737 ATP10AO60312 1499 aa23.65■■□□□ 1.38
SMG1-213ENST00000567737 C9orf84Q5VXU9 1444 aa23.65■■□□□ 1.38
SMG1-213ENST00000567737 IQSEC2Q5JU85 1478 aa23.63■■□□□ 1.37
SMG1-213ENST00000567737 MSH5O43196 834 aa23.63■■□□□ 1.37
SMG1-213ENST00000567737 SCAPERQ9BY12 1400 aa23.62■■□□□ 1.37
SMG1-213ENST00000567737 LTBP4Q8N2S1 1624 aa23.59■■□□□ 1.37
SMG1-213ENST00000567737 SETD1BQ9UPS6 1966 aaKnown RBP23.54■■□□□ 1.36
SMG1-213ENST00000567737 PLCH2O75038 1416 aa23.53■■□□□ 1.36
SMG1-213ENST00000567737 RANGAP1P46060 587 aaPredicted RBP23.5■■□□□ 1.35
SMG1-213ENST00000567737 UBAP1LF5GYI3 381 aa23.47■■□□□ 1.35
SMG1-213ENST00000567737 ESF1Q9H501 851 aaKnown RBP23.47■■□□□ 1.35
SMG1-213ENST00000567737 NCOA1Q15788 1441 aa23.46■■□□□ 1.35
SMG1-213ENST00000567737 EFCAB2Q5VUJ9 269 aa23.46■■□□□ 1.35
SMG1-213ENST00000567737 MYT1LQ9UL68 1186 aa23.46■■□□□ 1.35
SMG1-213ENST00000567737 TRAPPC8Q9Y2L5 1435 aa23.45■■□□□ 1.34
SMG1-213ENST00000567737 ZNF518AQ6AHZ1 1483 aa23.44■■□□□ 1.34
SMG1-213ENST00000567737 C3P01024 1663 aa23.44■■□□□ 1.34
SMG1-213ENST00000567737 CDK13Q14004 1512 aaKnown RBP23.38■■□□□ 1.33
SMG1-213ENST00000567737 AFAP1Q8N556 730 aa23.38■■□□□ 1.33
SMG1-213ENST00000567737 CSRNP3Q8WYN3 585 aa23.38■■□□□ 1.33
SMG1-213ENST00000567737 KDM5CP41229 1560 aa23.37■■□□□ 1.33
SMG1-213ENST00000567737 REREQ9P2R6 1566 aa23.37■■□□□ 1.33
SMG1-213ENST00000567737 MYO5CQ9NQX4 1742 aa23.36■■□□□ 1.33
SMG1-213ENST00000567737 ZNF335Q9H4Z2 1342 aaPredicted RBP23.36■■□□□ 1.33
SMG1-213ENST00000567737 DIP2CQ9Y2E4 1556 aa23.36■■□□□ 1.33
SMG1-213ENST00000567737 CAMSAP1Q5T5Y3 1602 aa23.35■■□□□ 1.33
SMG1-213ENST00000567737 AGLP35573 1532 aa23.33■■□□□ 1.32
SMG1-213ENST00000567737 CNTLNQ9NXG0 1405 aa23.33■■□□□ 1.32
SMG1-213ENST00000567737 ARHGAP5Q13017 1502 aa23.31■■□□□ 1.32
SMG1-213ENST00000567737 MED1Q15648 1581 aaPredicted RBP23.31■■□□□ 1.32
SMG1-213ENST00000567737 NCKAP5LQ9HCH0 1330 aa23.31■■□□□ 1.32
SMG1-213ENST00000567737 ABCA6Q8N139 1617 aa23.29■■□□□ 1.32
SMG1-213ENST00000567737 CDK11AQ9UQ88 783 aaPredicted RBP23.28■■□□□ 1.32
SMG1-213ENST00000567737 MLH3Q9UHC1 1453 aa23.28■■□□□ 1.32
SMG1-213ENST00000567737 NPATQ14207 1427 aa23.27■■□□□ 1.32
SMG1-213ENST00000567737 SCAF1Q9H7N4 1312 aaKnown RBP23.27■■□□□ 1.32
SMG1-213ENST00000567737 ATP1B4Q9UN42 357 aaPredicted RBP23.26■■□□□ 1.31
SMG1-213ENST00000567737 HSPA1LP34931 641 aa23.25■■□□□ 1.31
SMG1-213ENST00000567737 PKD2Q13563 968 aa23.25■■□□□ 1.31
SMG1-213ENST00000567737 KIF14Q15058 1648 aa23.24■■□□□ 1.31
SMG1-213ENST00000567737 PLA2R1Q13018 1463 aa23.21■■□□□ 1.31
SMG1-213ENST00000567737 PIP4K2BP78356 416 aa23.2■■□□□ 1.3
SMG1-213ENST00000567737 ZMYM3Q14202 1370 aa23.19■■□□□ 1.3
SMG1-213ENST00000567737 CLIP1P30622 1438 aa23.18■■□□□ 1.3
SMG1-213ENST00000567737 TOM1O60784 492 aa23.18■■□□□ 1.3
SMG1-213ENST00000567737 MROH2AA6NES4 1674 aa23.18■■□□□ 1.3
SMG1-213ENST00000567737 TROQ12816 1431 aaPredicted RBP23.17■■□□□ 1.3
SMG1-213ENST00000567737 TCOF1Q13428 1488 aaKnown RBP23.16■■□□□ 1.3
SMG1-213ENST00000567737 FMN1Q68DA7 1419 aa23.14■■□□□ 1.29
SMG1-213ENST00000567737 ABCC1P33527 1531 aa23.13■■□□□ 1.29
SMG1-213ENST00000567737 ZNF142P52746 1687 aaPredicted RBP23.13■■□□□ 1.29
SMG1-213ENST00000567737 MYO3AQ8NEV4 1616 aa23.12■■□□□ 1.29
SMG1-213ENST00000567737 EEA1Q15075 1411 aa23.12■■□□□ 1.29
SMG1-213ENST00000567737 CEP170BQ9Y4F5 1589 aaPredicted RBP23.11■■□□□ 1.29
SMG1-213ENST00000567737 SUPT6HQ7KZ85 1726 aaKnown RBP23.11■■□□□ 1.29
SMG1-213ENST00000567737 KIDINS220Q9ULH0 1771 aa23.1■■□□□ 1.29
SMG1-213ENST00000567737 CDC42BPBQ9Y5S2 1711 aa23.1■■□□□ 1.29
SMG1-213ENST00000567737 ITSN2Q9NZM3 1697 aa23.09■■□□□ 1.29
SMG1-213ENST00000567737 CPS1P31327 1500 aa23.07■■□□□ 1.28
SMG1-213ENST00000567737 PREX2Q70Z35 1606 aa23.05■■□□□ 1.28
SMG1-213ENST00000567737 PTPRKQ15262 1439 aa23.05■■□□□ 1.28
SMG1-213ENST00000567737 PPP4R3CPQ6ZMV5 832 aa23.03■■□□□ 1.28
SMG1-213ENST00000567737 CLTCQ00610 1675 aaKnown RBP23.03■■□□□ 1.28
SMG1-213ENST00000567737 SHANK2Q9UPX8 1470 aa22.99■■□□□ 1.27
SMG1-213ENST00000567737 SAMD9LQ8IVG5 1584 aa22.99■■□□□ 1.27
SMG1-213ENST00000567737 SPAG9O60271 1321 aaKnown RBP22.98■■□□□ 1.27
SMG1-213ENST00000567737 A2ML1A8K2U0 1454 aa22.98■■□□□ 1.27
SMG1-213ENST00000567737 GGT6Q6P531 493 aa22.96■■□□□ 1.27
SMG1-213ENST00000567737 ARHGAP35Q9NRY4 1499 aa22.95■■□□□ 1.26
SMG1-213ENST00000567737 DNMT1P26358 1616 aaKnown RBP22.94■■□□□ 1.26
SMG1-213ENST00000567737 ZNF777Q9ULD5 760 aaPredicted RBP22.94■■□□□ 1.26
SMG1-213ENST00000567737 A2MP01023 1474 aa22.92■■□□□ 1.26
SMG1-213ENST00000567737 PLXNC1O60486 1568 aa22.91■■□□□ 1.26
SMG1-213ENST00000567737 POLR1AO95602 1720 aaPredicted RBP22.91■■□□□ 1.26
SMG1-213ENST00000567737 NEURL4Q96JN8 1562 aa22.9■■□□□ 1.26
SMG1-213ENST00000567737 UBTFP17480 764 aaKnown RBP22.9■■□□□ 1.26
SMG1-213ENST00000567737 ATP7AQ04656 1500 aa22.9■■□□□ 1.26
SMG1-213ENST00000567737 SYCP2Q9BX26 1530 aa22.9■■□□□ 1.26
SMG1-213ENST00000567737 LRRIQ1Q96JM4 1722 aa22.9■■□□□ 1.26
SMG1-213ENST00000567737 HNRNPMP52272 730 aaKnown RBP eCLIP22.88■■□□□ 1.253e-6■□□□□ 9
SMG1-213ENST00000567737 CDC42BPAQ5VT25 1732 aa22.88■■□□□ 1.25
SMG1-213ENST00000567737 ALKQ9UM73 1620 aa22.87■■□□□ 1.25
SMG1-213ENST00000567737 ANKLE2Q86XL3 938 aa22.87■■□□□ 1.25
SMG1-213ENST00000567737 EHMT2Q96KQ7 1210 aa22.86■■□□□ 1.25
SMG1-213ENST00000567737 CCDC18Q5T9S5 1454 aa22.85■■□□□ 1.25
Retrieved 100 of 20,778 RNA–protein pairs in 14.7 ms