RNA–Protein interactions for RNA: ENST00000566612.5

CDH1-210, Transcript of cadherin 1, humanhuman

TSL 1 (best)

Gene CDH1, Length 4,138 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDH1-210ENST00000566612 EFCAB5A4FU69 1503 aa15.45■□□□□ 0.06
CDH1-210ENST00000566612 WASHC2AQ641Q2 1341 aa15.44■□□□□ 0.06
CDH1-210ENST00000566612 ST20-MTHFSA0A0A6YYL1 179 aa15.44■□□□□ 0.06
CDH1-210ENST00000566612 STAG3Q9UJ98 1225 aa15.44■□□□□ 0.06
CDH1-210ENST00000566612 RBM19Q9Y4C8 960 aaKnown RBP15.44■□□□□ 0.06
CDH1-210ENST00000566612 GRIN2BQ13224 1484 aa15.43■□□□□ 0.06
CDH1-210ENST00000566612 HFM1A2PYH4 1435 aa15.42■□□□□ 0.06
CDH1-210ENST00000566612 ROCK2O75116 1388 aaKnown RBP15.42■□□□□ 0.06
CDH1-210ENST00000566612 NBR1Q14596 966 aa15.41■□□□□ 0.06
CDH1-210ENST00000566612 URB2Q14146 1524 aaKnown RBP15.41■□□□□ 0.06
CDH1-210ENST00000566612 PTPRGP23470 1445 aa15.4■□□□□ 0.06
CDH1-210ENST00000566612 NAIPQ13075 1403 aa15.4■□□□□ 0.06
CDH1-210ENST00000566612 PRDM2Q13029 1718 aa15.39■□□□□ 0.05
CDH1-210ENST00000566612 TMF1P82094 1093 aa15.39■□□□□ 0.05
CDH1-210ENST00000566612 NBPF8Q3BBV2 869 aa15.39■□□□□ 0.05
CDH1-210ENST00000566612 EFCAB2Q5VUJ9 269 aa15.39■□□□□ 0.05
CDH1-210ENST00000566612 TNNT2P45379 298 aaPredicted RBP15.38■□□□□ 0.05
CDH1-210ENST00000566612 ANP32EQ9BTT0 268 aa15.38■□□□□ 0.05
CDH1-210ENST00000566612 CDK13Q14004 1512 aaKnown RBP15.37■□□□□ 0.05
CDH1-210ENST00000566612 PLPPR3Q6T4P5 718 aa15.37■□□□□ 0.05
CDH1-210ENST00000566612 PRG4Q92954 1404 aaPredicted RBP15.37■□□□□ 0.05
CDH1-210ENST00000566612 KIF7Q2M1P5 1343 aa15.37■□□□□ 0.05
CDH1-210ENST00000566612 USP47Q96K76 1375 aa15.36■□□□□ 0.05
CDH1-210ENST00000566612 NEUROD2Q15784 382 aa15.36■□□□□ 0.05
CDH1-210ENST00000566612 MAP3K1Q13233 1512 aa15.35■□□□□ 0.05
CDH1-210ENST00000566612 ZBTB47Q9UFB7 747 aaPredicted RBP15.35■□□□□ 0.05
CDH1-210ENST00000566612 MRC2Q9UBG0 1479 aa15.34■□□□□ 0.05
CDH1-210ENST00000566612 CDCA8Q53HL2 280 aa15.34■□□□□ 0.05
CDH1-210ENST00000566612 CCDC7Q96M83 1385 aa15.34■□□□□ 0.05
CDH1-210ENST00000566612 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP15.34■□□□□ 0.05
CDH1-210ENST00000566612 GGT6Q6P531 493 aa15.33■□□□□ 0.04
CDH1-210ENST00000566612 CCDC184Q52MB2 194 aa15.33■□□□□ 0.04
CDH1-210ENST00000566612 NEFMP07197 916 aa15.32■□□□□ 0.04
CDH1-210ENST00000566612 EPRSP07814 1512 aaKnown RBP15.32■□□□□ 0.04
CDH1-210ENST00000566612 EHBP1L1Q8N3D4 1523 aa15.32■□□□□ 0.04
CDH1-210ENST00000566612 KIF3BO15066 747 aa15.32■□□□□ 0.04
CDH1-210ENST00000566612 GOLGA6L2Q8N9W4 650 aaPredicted RBP15.32■□□□□ 0.04
CDH1-210ENST00000566612 ESF1Q9H501 851 aaKnown RBP15.32■□□□□ 0.04
CDH1-210ENST00000566612 RSPH4AQ5TD94 716 aa15.31■□□□□ 0.04
CDH1-210ENST00000566612 LAMC3Q9Y6N6 1575 aa15.31■□□□□ 0.04
CDH1-210ENST00000566612 PTPRKQ15262 1439 aa15.31■□□□□ 0.04
CDH1-210ENST00000566612 SNAPC4Q5SXM2 1469 aa15.3■□□□□ 0.04
CDH1-210ENST00000566612 ANKRD50Q9ULJ7 1429 aa15.3■□□□□ 0.04
CDH1-210ENST00000566612 KTN1Q86UP2 1357 aaKnown RBP15.3■□□□□ 0.04
CDH1-210ENST00000566612 KIF15Q9NS87 1388 aa15.29■□□□□ 0.04
CDH1-210ENST00000566612 SPAG9O60271 1321 aaKnown RBP15.29■□□□□ 0.04
CDH1-210ENST00000566612 MAPKBP1O60336 1514 aa15.28■□□□□ 0.04
CDH1-210ENST00000566612 C11orf95C9JLR9 678 aaPredicted RBP15.28■□□□□ 0.04
CDH1-210ENST00000566612 RALBP1Q15311 655 aa15.28■□□□□ 0.04
CDH1-210ENST00000566612 MIA2Q96PC5 1412 aa15.28■□□□□ 0.04
CDH1-210ENST00000566612 SAFB2Q14151 953 aaKnown RBP eCLIP15.27■□□□□ 0.04
CDH1-210ENST00000566612 NUDCQ9Y266 331 aa15.27■□□□□ 0.04
CDH1-210ENST00000566612 IFT140Q96RY7 1462 aa15.27■□□□□ 0.04
CDH1-210ENST00000566612 CUL7Q14999 1698 aa15.27■□□□□ 0.04
CDH1-210ENST00000566612 CCDC144AA2RUR9 1427 aa15.27■□□□□ 0.04
CDH1-210ENST00000566612 ZNF608Q9ULD9 1512 aaPredicted RBP15.26■□□□□ 0.03
CDH1-210ENST00000566612 SUPT6HQ7KZ85 1726 aaKnown RBP15.26■□□□□ 0.03
CDH1-210ENST00000566612 SLC24A1O60721 1099 aa15.25■□□□□ 0.03
CDH1-210ENST00000566612 PANK3Q9H999 370 aa15.25■□□□□ 0.03
CDH1-210ENST00000566612 KANK1Q14678 1352 aa15.25■□□□□ 0.03
CDH1-210ENST00000566612 DAPK1P53355 1430 aa15.25■□□□□ 0.03
CDH1-210ENST00000566612 CNTLNQ9NXG0 1405 aa15.25■□□□□ 0.03
CDH1-210ENST00000566612 NLRP13Q86W25 1043 aa15.24■□□□□ 0.03
CDH1-210ENST00000566612 RCAN3Q9UKA8 241 aa15.24■□□□□ 0.03
CDH1-210ENST00000566612 IQGAP2Q13576 1575 aa15.24■□□□□ 0.03
CDH1-210ENST00000566612 TROQ12816 1431 aaPredicted RBP15.24■□□□□ 0.03
CDH1-210ENST00000566612 ZBED9Q6R2W3 1325 aa15.23■□□□□ 0.03
CDH1-210ENST00000566612 KIAA0586Q9BVV6 1533 aa15.23■□□□□ 0.03
CDH1-210ENST00000566612 HECW1Q76N89 1606 aa15.23■□□□□ 0.03
CDH1-210ENST00000566612 PLB1Q6P1J6 1458 aa15.22■□□□□ 0.03
CDH1-210ENST00000566612 PPM1GO15355 546 aaPredicted RBP15.21■□□□□ 0.03
CDH1-210ENST00000566612 NUTM2DQ5VT03 806 aaPredicted RBP15.21■□□□□ 0.03
CDH1-210ENST00000566612 ERICH6BQ5W0A0 696 aa15.21■□□□□ 0.03
CDH1-210ENST00000566612 PTPN23Q9H3S7 1636 aa15.21■□□□□ 0.02
CDH1-210ENST00000566612 NBPF1Q3BBV0 1214 aa15.2■□□□□ 0.02
CDH1-210ENST00000566612 MYBBP1AQ9BQG0 1328 aaKnown RBP15.2■□□□□ 0.02
CDH1-210ENST00000566612 RGS3P49796 1198 aa15.2■□□□□ 0.02
CDH1-210ENST00000566612 FRAT1Q92837 279 aaPredicted RBP15.19■□□□□ 0.02
CDH1-210ENST00000566612 AFAP1Q8N556 730 aa15.19■□□□□ 0.02
CDH1-210ENST00000566612 ABCC5O15440 1437 aa15.19■□□□□ 0.02
CDH1-210ENST00000566612 STK26Q9P289 416 aa15.19■□□□□ 0.02
CDH1-210ENST00000566612 ANKRD30BQ9BXX2 1392 aa15.17■□□□□ 0.02
CDH1-210ENST00000566612 CCDC146Q8IYE0 955 aa15.17■□□□□ 0.02
CDH1-210ENST00000566612 CFAP53Q96M91 514 aa15.17■□□□□ 0.02
CDH1-210ENST00000566612 POGKQ9P215 609 aa15.16■□□□□ 0.02
CDH1-210ENST00000566612 KIAA1107Q9UPP5 1409 aa15.16■□□□□ 0.02
CDH1-210ENST00000566612 MORC1Q86VD1 984 aa15.16■□□□□ 0.02
CDH1-210ENST00000566612 C9orf84Q5VXU9 1444 aa15.16■□□□□ 0.02
CDH1-210ENST00000566612 PLIN1O60240 522 aa15.15■□□□□ 0.02
CDH1-210ENST00000566612 MLECQ14165 292 aa15.15■□□□□ 0.02
CDH1-210ENST00000566612 U2SURPO15042 1029 aaKnown RBP15.14■□□□□ 0.01
CDH1-210ENST00000566612 TRAK1Q9UPV9 953 aa15.14■□□□□ 0.01
CDH1-210ENST00000566612 NOP58Q9Y2X3 529 aaKnown RBP15.13■□□□□ 0.01
CDH1-210ENST00000566612 THOC2Q8NI27 1593 aaKnown RBP15.13■□□□□ 0.01
CDH1-210ENST00000566612 GRIN2AQ12879 1464 aa15.13■□□□□ 0.01
CDH1-210ENST00000566612 ROCK1Q13464 1354 aa15.12■□□□□ 0.01
CDH1-210ENST00000566612 SRPK2P78362 688 aaKnown RBP15.12■□□□□ 0.01
CDH1-210ENST00000566612 LAS1LQ9Y4W2 734 aaKnown RBP15.12■□□□□ 0.01
CDH1-210ENST00000566612 SYNJ2O15056 1496 aa15.11■□□□□ 0.01
CDH1-210ENST00000566612 EXOC6Q8TAG9 804 aa15.11■□□□□ 0.01
Retrieved 100 of 20,778 RNA–protein pairs in 91.2 ms