RNA–Protein interactions for RNA: ENST00000563911.5

HERPUD1-208, Transcript of homocysteine inducible ER protein with ubiquitin like domain 1, humanhuman

TSL 3

Gene HERPUD1, Length 844 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HERPUD1-208ENST00000563911 OCEL1Q9H607 264 aa12.18□□□□□ -0.46
HERPUD1-208ENST00000563911 IRX5P78411 483 aaPredicted RBP12.17□□□□□ -0.46
HERPUD1-208ENST00000563911 DCBLD2Q96PD2 775 aa12.17□□□□□ -0.46
HERPUD1-208ENST00000563911 MICALL2Q8IY33 904 aa12.15□□□□□ -0.46
HERPUD1-208ENST00000563911 G3V3G9 751 aa12.14□□□□□ -0.47
HERPUD1-208ENST00000563911 PLCG2P16885 1265 aa12.14□□□□□ -0.47
HERPUD1-208ENST00000563911 GPHNQ9NQX3 736 aaPredicted RBP12.14□□□□□ -0.47
HERPUD1-208ENST00000563911 BOLA1Q9Y3E2 137 aa12.12□□□□□ -0.47
HERPUD1-208ENST00000563911 TULP1O00294 542 aaPredicted RBP12.1□□□□□ -0.47
HERPUD1-208ENST00000563911 SEC24BO95487 1268 aa12.1□□□□□ -0.47
HERPUD1-208ENST00000563911 PPP1R15BQ5SWA1 713 aa12.1□□□□□ -0.47
HERPUD1-208ENST00000563911 TMC2Q8TDI7 906 aa12.1□□□□□ -0.47
HERPUD1-208ENST00000563911 MYO15BQ96JP2 1530 aa12.1□□□□□ -0.47
HERPUD1-208ENST00000563911 CECR2Q9BXF3 1484 aa12.09□□□□□ -0.47
HERPUD1-208ENST00000563911 PELP1Q8IZL8 1130 aaKnown RBP12.09□□□□□ -0.47
HERPUD1-208ENST00000563911 CC2D2AQ9P2K1 1620 aa12.08□□□□□ -0.48
HERPUD1-208ENST00000563911 CAMK2BQ13554 666 aa12.08□□□□□ -0.48
HERPUD1-208ENST00000563911 SEMA3EO15041 775 aa12.07□□□□□ -0.48
HERPUD1-208ENST00000563911 DHX30Q7L2E3 1194 aaKnown RBP eCLIP12.07□□□□□ -0.48
HERPUD1-208ENST00000563911 TMEM121BQ9BXQ6 578 aaPredicted RBP12.07□□□□□ -0.48
HERPUD1-208ENST00000563911 LMOD2Q6P5Q4 547 aa12.06□□□□□ -0.48
HERPUD1-208ENST00000563911 L3MBTL3Q96JM7 780 aaPredicted RBP12.06□□□□□ -0.48
HERPUD1-208ENST00000563911 DSG2Q14126 1118 aa12.05□□□□□ -0.48
HERPUD1-208ENST00000563911 SLC39A7Q92504 469 aa12.04□□□□□ -0.48
HERPUD1-208ENST00000563911 COLQQ9Y215 455 aaPredicted RBP12.04□□□□□ -0.48
HERPUD1-208ENST00000563911 ARIH1Q9Y4X5 557 aaPredicted RBP12.04□□□□□ -0.48
HERPUD1-208ENST00000563911 TESPA1A2RU30 521 aaPredicted RBP12.02□□□□□ -0.49
HERPUD1-208ENST00000563911 C7P10643 843 aa12.01□□□□□ -0.49
HERPUD1-208ENST00000563911 FOXK1P85037 733 aa12.01□□□□□ -0.49
HERPUD1-208ENST00000563911 C2orf72A6NCS6 295 aa12□□□□□ -0.49
HERPUD1-208ENST00000563911 SMYD5Q6GMV2 418 aa11.98□□□□□ -0.49
HERPUD1-208ENST00000563911 PLPP6Q8IY26 295 aa11.98□□□□□ -0.49
HERPUD1-208ENST00000563911 EIF4G1Q04637 1599 aaKnown RBP11.97□□□□□ -0.49
HERPUD1-208ENST00000563911 EMILIN3Q9NT22 766 aa11.97□□□□□ -0.49
HERPUD1-208ENST00000563911 METRNQ9UJH8 293 aa11.97□□□□□ -0.49
HERPUD1-208ENST00000563911 DPYSL4O14531 572 aa11.96□□□□□ -0.49
HERPUD1-208ENST00000563911 SP7Q8TDD2 431 aaPredicted RBP11.96□□□□□ -0.49
HERPUD1-208ENST00000563911 KIF3CO14782 793 aa11.95□□□□□ -0.5
HERPUD1-208ENST00000563911 POTEFA5A3E0 1075 aa11.94□□□□□ -0.5
HERPUD1-208ENST00000563911 POTEIP0CG38 1075 aa11.94□□□□□ -0.5
HERPUD1-208ENST00000563911 SHROOM4Q9ULL8 1493 aa11.91□□□□□ -0.5
HERPUD1-208ENST00000563911 TMEM92Q6UXU6 159 aa11.91□□□□□ -0.5
HERPUD1-208ENST00000563911 SCRIBQ14160 1630 aa11.9□□□□□ -0.5
HERPUD1-208ENST00000563911 ZCCHC6Q5VYS8 1495 aaKnown RBP11.89□□□□□ -0.51
HERPUD1-208ENST00000563911 SPDYE16A6NNV3 312 aaPredicted RBP11.89□□□□□ -0.51
HERPUD1-208ENST00000563911 MLLT3P42568 568 aaPredicted RBP11.89□□□□□ -0.51
HERPUD1-208ENST00000563911 C3orf67Q6ZVT6 689 aa11.89□□□□□ -0.51
HERPUD1-208ENST00000563911 MAP3K9P80192 1104 aa11.88□□□□□ -0.51
HERPUD1-208ENST00000563911 ZC3H15Q8WU90 426 aaKnown RBP11.88□□□□□ -0.51
HERPUD1-208ENST00000563911 PDIA6Q15084 440 aa11.87□□□□□ -0.51
HERPUD1-208ENST00000563911 UPF1Q92900 1129 aaKnown RBP eCLIP11.85□□□□□ -0.51
HERPUD1-208ENST00000563911 DCAF1Q9Y4B6 1507 aa11.85□□□□□ -0.51
HERPUD1-208ENST00000563911 RBM26Q5T8P6 1007 aaKnown RBP11.83□□□□□ -0.52
HERPUD1-208ENST00000563911 OXER1Q8TDS5 423 aa11.79□□□□□ -0.52
HERPUD1-208ENST00000563911 EIF2AK3Q9NZJ5 1116 aaKnown RBP11.79□□□□□ -0.52
HERPUD1-208ENST00000563911 TBC1D12O60347 775 aa11.78□□□□□ -0.52
HERPUD1-208ENST00000563911 GRXCR2A6NFK2 248 aa11.77□□□□□ -0.53
HERPUD1-208ENST00000563911 GPIHBP1Q8IV16 184 aa11.77□□□□□ -0.53
HERPUD1-208ENST00000563911 ZMYND10O75800 440 aa11.76□□□□□ -0.53
HERPUD1-208ENST00000563911 SLC24A3Q9HC58 644 aa11.75□□□□□ -0.53
HERPUD1-208ENST00000563911 EVI5O60447 810 aa11.72□□□□□ -0.53
HERPUD1-208ENST00000563911 PTCD2Q8WV60 388 aaKnown RBP11.72□□□□□ -0.53
HERPUD1-208ENST00000563911 DDX12PQ92771 950 aa11.71□□□□□ -0.53
HERPUD1-208ENST00000563911 ZNF316A6NFI3 1004 aaPredicted RBP11.7□□□□□ -0.54
HERPUD1-208ENST00000563911 BARGINQ6ZT62 677 aa11.7□□□□□ -0.54
HERPUD1-208ENST00000563911 SLC34A2O95436 690 aa11.69□□□□□ -0.54
HERPUD1-208ENST00000563911 PTGER2P43116 358 aa11.69□□□□□ -0.54
HERPUD1-208ENST00000563911 KRI1Q8N9T8 703 aaKnown RBP11.69□□□□□ -0.54
HERPUD1-208ENST00000563911 NUTM2FA1L443 756 aa11.67□□□□□ -0.54
HERPUD1-208ENST00000563911 OSBPP22059 807 aa11.66□□□□□ -0.54
HERPUD1-208ENST00000563911 BRPF1P55201 1214 aaPredicted RBP11.63□□□□□ -0.55
HERPUD1-208ENST00000563911 NEUROD2Q15784 382 aa11.62□□□□□ -0.55
HERPUD1-208ENST00000563911 ANO8Q9HCE9 1232 aaPredicted RBP11.62□□□□□ -0.55
HERPUD1-208ENST00000563911 PCDHGA4Q9Y5G9 962 aa11.62□□□□□ -0.55
HERPUD1-208ENST00000563911 POTEJP0CG39 1038 aa11.61□□□□□ -0.55
HERPUD1-208ENST00000563911 AK7Q96M32 723 aa11.61□□□□□ -0.55
HERPUD1-208ENST00000563911 CUX2O14529 1486 aa11.59□□□□□ -0.55
HERPUD1-208ENST00000563911 POTEB2H3BUK9 544 aa11.59□□□□□ -0.55
HERPUD1-208ENST00000563911 GPR37O15354 613 aa11.58□□□□□ -0.56
HERPUD1-208ENST00000563911 SLAIN1Q8ND83 568 aa11.58□□□□□ -0.56
HERPUD1-208ENST00000563911 TMEM132AQ24JP5 1023 aa11.57□□□□□ -0.56
HERPUD1-208ENST00000563911 FCHSD2O94868 740 aa11.56□□□□□ -0.56
HERPUD1-208ENST00000563911 PRIM1P49642 420 aaKnown RBP11.56□□□□□ -0.56
HERPUD1-208ENST00000563911 SCUBE2Q9NQ36 999 aa11.56□□□□□ -0.56
HERPUD1-208ENST00000563911 PHF14O94880 888 aa11.55□□□□□ -0.56
HERPUD1-208ENST00000563911 MAMSTRQ6ZN01 415 aa11.55□□□□□ -0.56
HERPUD1-208ENST00000563911 DOK7Q18PE1 504 aa11.54□□□□□ -0.56
HERPUD1-208ENST00000563911 EPAS1Q99814 870 aa11.54□□□□□ -0.56
HERPUD1-208ENST00000563911 GNPATO15228 680 aa11.53□□□□□ -0.56
HERPUD1-208ENST00000563911 HIC1Q14526 733 aa11.53□□□□□ -0.56
HERPUD1-208ENST00000563911 RBM33Q96EV2 1170 aaKnown RBP11.52□□□□□ -0.57
HERPUD1-208ENST00000563911 PCDHGA10Q9Y5H3 936 aa11.52□□□□□ -0.57
HERPUD1-208ENST00000563911 MINK1Q8N4C8 1332 aaPredicted RBP11.52□□□□□ -0.57
HERPUD1-208ENST00000563911 RIMBP2O15034 1052 aa11.51□□□□□ -0.57
HERPUD1-208ENST00000563911 MAP3K7O43318 606 aa11.51□□□□□ -0.57
HERPUD1-208ENST00000563911 EN1Q05925 392 aaPredicted RBP11.51□□□□□ -0.57
HERPUD1-208ENST00000563911 NCAPD3P42695 1498 aa11.51□□□□□ -0.57
HERPUD1-208ENST00000563911 ERCC6Q03468 1493 aa11.51□□□□□ -0.57
HERPUD1-208ENST00000563911 NESP48681 1621 aa11.5□□□□□ -0.57
HERPUD1-208ENST00000563911 TRIM66O15016 1216 aa11.5□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 13.2 ms