RNA–Protein interactions for RNA: ENST00000560502.5

LDLR-213, Transcript of low density lipoprotein receptor, humanhuman

TSL 2

Gene LDLR, Length 509 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-213ENST00000560502 LRRIQ1Q96JM4 1722 aa23.04■■□□□ 1.28
LDLR-213ENST00000560502 KIF14Q15058 1648 aa23.04■■□□□ 1.28
LDLR-213ENST00000560502 SCAPERQ9BY12 1400 aa23.02■■□□□ 1.28
LDLR-213ENST00000560502 UBTFP17480 764 aaKnown RBP23.02■■□□□ 1.28
LDLR-213ENST00000560502 FER1L4A9Z1Z3 1794 aa22.99■■□□□ 1.27
LDLR-213ENST00000560502 TROQ12816 1431 aaPredicted RBP22.98■■□□□ 1.27
LDLR-213ENST00000560502 EHMT2Q96KQ7 1210 aa22.97■■□□□ 1.27
LDLR-213ENST00000560502 KDM5CP41229 1560 aa22.93■■□□□ 1.26
LDLR-213ENST00000560502 ARHGEF12Q9NZN5 1544 aa22.93■■□□□ 1.26
LDLR-213ENST00000560502 ATP10AO60312 1499 aa22.93■■□□□ 1.26
LDLR-213ENST00000560502 EFCAB2Q5VUJ9 269 aa22.93■■□□□ 1.26
LDLR-213ENST00000560502 CDK11AQ9UQ88 783 aaPredicted RBP22.93■■□□□ 1.26
LDLR-213ENST00000560502 C9orf84Q5VXU9 1444 aa22.92■■□□□ 1.26
LDLR-213ENST00000560502 ATP1B4Q9UN42 357 aaPredicted RBP22.92■■□□□ 1.26
LDLR-213ENST00000560502 CDC42BPBQ9Y5S2 1711 aa22.91■■□□□ 1.26
LDLR-213ENST00000560502 ARHGAP5Q13017 1502 aa22.9■■□□□ 1.26
LDLR-213ENST00000560502 ZNF518AQ6AHZ1 1483 aa22.9■■□□□ 1.26
LDLR-213ENST00000560502 CLIP1P30622 1438 aa22.9■■□□□ 1.26
LDLR-213ENST00000560502 FBXO41Q8TF61 875 aa22.89■■□□□ 1.25
LDLR-213ENST00000560502 PREX2Q70Z35 1606 aa22.87■■□□□ 1.25
LDLR-213ENST00000560502 DIP2CQ9Y2E4 1556 aa22.85■■□□□ 1.25
LDLR-213ENST00000560502 CASKIN1Q8WXD9 1431 aa22.85■■□□□ 1.25
LDLR-213ENST00000560502 MLECQ14165 292 aa22.85■■□□□ 1.25
LDLR-213ENST00000560502 CCDC18Q5T9S5 1454 aa22.85■■□□□ 1.25
LDLR-213ENST00000560502 REREQ9P2R6 1566 aa22.84■■□□□ 1.25
LDLR-213ENST00000560502 ABCC1P33527 1531 aa22.82■■□□□ 1.24
LDLR-213ENST00000560502 ABCA6Q8N139 1617 aa22.82■■□□□ 1.24
LDLR-213ENST00000560502 PREX1Q8TCU6 1659 aa22.82■■□□□ 1.24
LDLR-213ENST00000560502 HSPA2P54652 639 aa22.82■■□□□ 1.24
LDLR-213ENST00000560502 ITSN2Q9NZM3 1697 aa22.81■■□□□ 1.24
LDLR-213ENST00000560502 MLH3Q9UHC1 1453 aa22.8■■□□□ 1.24
LDLR-213ENST00000560502 PLPPR3Q6T4P5 718 aa22.8■■□□□ 1.24
LDLR-213ENST00000560502 AFAP1Q8N556 730 aa22.8■■□□□ 1.24
LDLR-213ENST00000560502 CDC42BPAQ5VT25 1732 aa22.79■■□□□ 1.24
LDLR-213ENST00000560502 FYCO1Q9BQS8 1478 aa22.77■■□□□ 1.24
LDLR-213ENST00000560502 TRAPPC8Q9Y2L5 1435 aa22.75■■□□□ 1.23
LDLR-213ENST00000560502 AGLP35573 1532 aa22.75■■□□□ 1.23
LDLR-213ENST00000560502 KIDINS220Q9ULH0 1771 aa22.73■■□□□ 1.23
LDLR-213ENST00000560502 SETD1BQ9UPS6 1966 aaKnown RBP22.72■■□□□ 1.23
LDLR-213ENST00000560502 C3P01024 1663 aa22.71■■□□□ 1.23
LDLR-213ENST00000560502 CEBPAP49715 358 aaPredicted RBP22.7■■□□□ 1.22
LDLR-213ENST00000560502 STRCQ7RTU9 1775 aa22.69■■□□□ 1.22
LDLR-213ENST00000560502 SAMD9LQ8IVG5 1584 aa22.69■■□□□ 1.22
LDLR-213ENST00000560502 MYT1LQ9UL68 1186 aa22.65■■□□□ 1.22
LDLR-213ENST00000560502 UHRF1BP1Q6BDS2 1440 aa22.65■■□□□ 1.22
LDLR-213ENST00000560502 GPATCH8Q9UKJ3 1502 aaKnown RBP22.64■■□□□ 1.21
LDLR-213ENST00000560502 SYCP2Q9BX26 1530 aa22.63■■□□□ 1.21
LDLR-213ENST00000560502 CERKQ8TCT0 537 aa22.61■■□□□ 1.21
LDLR-213ENST00000560502 MROH2AA6NES4 1674 aa22.59■■□□□ 1.21
LDLR-213ENST00000560502 INO80Q9ULG1 1556 aaPredicted RBP22.59■■□□□ 1.21
LDLR-213ENST00000560502 CNTLNQ9NXG0 1405 aa22.58■■□□□ 1.21
LDLR-213ENST00000560502 KIAA1107Q9UPP5 1409 aa22.57■■□□□ 1.2
LDLR-213ENST00000560502 PLXNC1O60486 1568 aa22.56■■□□□ 1.2
LDLR-213ENST00000560502 ATP7AQ04656 1500 aa22.56■■□□□ 1.2
LDLR-213ENST00000560502 PLEKHH2Q8IVE3 1493 aa22.55■■□□□ 1.2
LDLR-213ENST00000560502 SUPT6HQ7KZ85 1726 aaKnown RBP22.54■■□□□ 1.2
LDLR-213ENST00000560502 ZNF777Q9ULD5 760 aaPredicted RBP22.53■■□□□ 1.2
LDLR-213ENST00000560502 DMRT2Q9Y5R5 561 aa22.52■■□□□ 1.2
LDLR-213ENST00000560502 SPAG9O60271 1321 aaKnown RBP22.52■■□□□ 1.2
LDLR-213ENST00000560502 PTPRTO14522 1441 aa22.51■■□□□ 1.19
LDLR-213ENST00000560502 ESF1Q9H501 851 aaKnown RBP22.51■■□□□ 1.19
LDLR-213ENST00000560502 TIAM1Q13009 1591 aa22.5■■□□□ 1.19
LDLR-213ENST00000560502 NPATQ14207 1427 aa22.5■■□□□ 1.19
LDLR-213ENST00000560502 HNRNPMP52272 730 aaKnown RBP eCLIP22.5■■□□□ 1.19
LDLR-213ENST00000560502 CCNB3Q8WWL7 1395 aa22.5■■□□□ 1.19
LDLR-213ENST00000560502 CFDP1Q9UEE9 299 aaPredicted RBP22.49■■□□□ 1.19
LDLR-213ENST00000560502 EHBP1L1Q8N3D4 1523 aa22.48■■□□□ 1.19
LDLR-213ENST00000560502 CLTCQ00610 1675 aaKnown RBP22.48■■□□□ 1.19
LDLR-213ENST00000560502 MTUS2Q5JR59 1369 aa22.48■■□□□ 1.19
LDLR-213ENST00000560502 NCOA1Q15788 1441 aa22.48■■□□□ 1.19
LDLR-213ENST00000560502 A2MP01023 1474 aa22.47■■□□□ 1.19
LDLR-213ENST00000560502 ADGBQ8N7X0 1667 aa22.47■■□□□ 1.19
LDLR-213ENST00000560502 ZNF142P52746 1687 aaPredicted RBP22.44■■□□□ 1.18
LDLR-213ENST00000560502 ZMYM3Q14202 1370 aa22.44■■□□□ 1.18
LDLR-213ENST00000560502 LTBP4Q8N2S1 1624 aa22.43■■□□□ 1.18
LDLR-213ENST00000560502 MBD5Q9P267 1494 aa22.43■■□□□ 1.18
LDLR-213ENST00000560502 MYO3AQ8NEV4 1616 aa22.42■■□□□ 1.18
LDLR-213ENST00000560502 CAMSAP1Q5T5Y3 1602 aa22.42■■□□□ 1.18
LDLR-213ENST00000560502 CEP162Q5TB80 1403 aa22.41■■□□□ 1.18
LDLR-213ENST00000560502 PTPRKQ15262 1439 aa22.39■■□□□ 1.17
LDLR-213ENST00000560502 ZNF644Q9H582 1327 aaPredicted RBP22.38■■□□□ 1.17
LDLR-213ENST00000560502 RTEL1-TNFRSF6BF6WH68 1400 aa22.36■■□□□ 1.17
LDLR-213ENST00000560502 CEP170BQ9Y4F5 1589 aaPredicted RBP22.36■■□□□ 1.17
LDLR-213ENST00000560502 IQSEC2Q5JU85 1478 aa22.35■■□□□ 1.17
LDLR-213ENST00000560502 PLA2R1Q13018 1463 aa22.34■■□□□ 1.17
LDLR-213ENST00000560502 PPP6R1Q9UPN7 881 aa22.32■■□□□ 1.16
LDLR-213ENST00000560502 NCOA2Q15596 1464 aa22.32■■□□□ 1.16
LDLR-213ENST00000560502 TCOF1Q13428 1488 aaKnown RBP22.31■■□□□ 1.16
LDLR-213ENST00000560502 GGT6Q6P531 493 aa22.31■■□□□ 1.16
LDLR-213ENST00000560502 CAMSAP2Q08AD1 1489 aa22.3■■□□□ 1.16
LDLR-213ENST00000560502 CCDC141Q6ZP82 1450 aa22.3■■□□□ 1.16
LDLR-213ENST00000560502 DHX29Q7Z478 1369 aaKnown RBP22.29■■□□□ 1.16
LDLR-213ENST00000560502 FAM135AQ9P2D6 1515 aa22.28■■□□□ 1.16
LDLR-213ENST00000560502 ARHGEF5Q12774 1597 aa22.26■■□□□ 1.15
LDLR-213ENST00000560502 NCKAP5LQ9HCH0 1330 aa22.26■■□□□ 1.15
LDLR-213ENST00000560502 DNMT1P26358 1616 aaKnown RBP22.25■■□□□ 1.15
LDLR-213ENST00000560502 A2ML1A8K2U0 1454 aa22.25■■□□□ 1.15
LDLR-213ENST00000560502 PKD2Q13563 968 aa22.24■■□□□ 1.15
LDLR-213ENST00000560502 KDM5DQ9BY66 1539 aa22.24■■□□□ 1.15
LDLR-213ENST00000560502 PZPP20742 1482 aa22.21■■□□□ 1.15
Retrieved 100 of 20,778 RNA–protein pairs in 90.7 ms