RNA–Protein interactions for RNA: ENST00000559496.5

ZEB1-216, Transcript of zinc finger E-box binding homeobox 1, humanhuman

TSL 1 (best)

Gene ZEB1, Length 1,381 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ZEB1-216ENST00000559496 MARVELD3Q96A59 401 aa13.25□□□□□ -0.29
ZEB1-216ENST00000559496 NKX1-1Q15270 411 aaPredicted RBP13.24□□□□□ -0.29
ZEB1-216ENST00000559496 DOK7Q18PE1 504 aa13.24□□□□□ -0.29
ZEB1-216ENST00000559496 RTN4Q9NQC3 1192 aaKnown RBP13.24□□□□□ -0.29
ZEB1-216ENST00000559496 KIF3CO14782 793 aa13.23□□□□□ -0.29
ZEB1-216ENST00000559496 RYDENQ9NUL5 291 aaKnown RBP13.22□□□□□ -0.29
ZEB1-216ENST00000559496 CDAN1Q8IWY9 1227 aa13.21□□□□□ -0.29
ZEB1-216ENST00000559496 HOXB1P14653 301 aaPredicted RBP13.2□□□□□ -0.3
ZEB1-216ENST00000559496 EMP3P54852 163 aa13.19□□□□□ -0.3
ZEB1-216ENST00000559496 ZNF710Q8N1W2 664 aa13.19□□□□□ -0.3
ZEB1-216ENST00000559496 C2orf72A6NCS6 295 aa13.17□□□□□ -0.3
ZEB1-216ENST00000559496 RIMBP2O15034 1052 aa13.16□□□□□ -0.3
ZEB1-216ENST00000559496 ZSWIM6Q9HCJ5 1215 aa13.16□□□□□ -0.3
ZEB1-216ENST00000559496 ZCCHC6Q5VYS8 1495 aaKnown RBP13.15□□□□□ -0.3
ZEB1-216ENST00000559496 PLSCR2Q9NRY7 297 aa13.15□□□□□ -0.3
ZEB1-216ENST00000559496 POTEB3A0JP26 581 aa13.12□□□□□ -0.31
ZEB1-216ENST00000559496 POTEBQ6S5H4 581 aa13.12□□□□□ -0.31
ZEB1-216ENST00000559496 GTPBP6O43824 516 aaPredicted RBP13.11□□□□□ -0.31
ZEB1-216ENST00000559496 GPR153Q6NV75 609 aa13.11□□□□□ -0.31
ZEB1-216ENST00000559496 HS3ST6Q96QI5 342 aa13.11□□□□□ -0.31
ZEB1-216ENST00000559496 FAM205CA6NFA0 338 aa13.1□□□□□ -0.31
ZEB1-216ENST00000559496 TMC2Q8TDI7 906 aa13.1□□□□□ -0.31
ZEB1-216ENST00000559496 ABCC9O60706 1549 aa13.07□□□□□ -0.32
ZEB1-216ENST00000559496 BBXQ8WY36 941 aaPredicted RBP13.05□□□□□ -0.32
ZEB1-216ENST00000559496 SLC34A2O95436 690 aa13.04□□□□□ -0.32
ZEB1-216ENST00000559496 ARSIQ5FYB1 569 aa13.02□□□□□ -0.33
ZEB1-216ENST00000559496 GPHNQ9NQX3 736 aaPredicted RBP13.01□□□□□ -0.33
ZEB1-216ENST00000559496 ERBB3P21860 1342 aa13□□□□□ -0.33
ZEB1-216ENST00000559496 FOXK1P85037 733 aa13□□□□□ -0.33
ZEB1-216ENST00000559496 KRTAP3-3Q9BYR6 98 aa13□□□□□ -0.33
ZEB1-216ENST00000559496 KRTAP3-2Q9BYR7 98 aa13□□□□□ -0.33
ZEB1-216ENST00000559496 KHSRPQ92945 711 aaKnown RBP eCLIP12.97□□□□□ -0.336e-7■■■■□ 21.8
ZEB1-216ENST00000559496 VARS2Q5ST30 1063 aaKnown RBP12.96□□□□□ -0.33
ZEB1-216ENST00000559496 DCAF1Q9Y4B6 1507 aa12.96□□□□□ -0.33
ZEB1-216ENST00000559496 CRISPLD2Q9H0B8 497 aa12.95□□□□□ -0.34
ZEB1-216ENST00000559496 DSG2Q14126 1118 aa12.94□□□□□ -0.34
ZEB1-216ENST00000559496 PCDHGA4Q9Y5G9 962 aa12.94□□□□□ -0.34
ZEB1-216ENST00000559496 PLPP6Q8IY26 295 aa12.94□□□□□ -0.34
ZEB1-216ENST00000559496 ZBTB4Q9P1Z0 1013 aaPredicted RBP12.93□□□□□ -0.34
ZEB1-216ENST00000559496 ZNF316A6NFI3 1004 aaPredicted RBP12.92□□□□□ -0.34
ZEB1-216ENST00000559496 PDE4AP27815 886 aa12.92□□□□□ -0.34
ZEB1-216ENST00000559496 SPNS2Q8IVW8 549 aa12.92□□□□□ -0.34
ZEB1-216ENST00000559496 PTCD2Q8WV60 388 aaKnown RBP12.91□□□□□ -0.34
ZEB1-216ENST00000559496 NUDT7P0C024 238 aa12.9□□□□□ -0.34
ZEB1-216ENST00000559496 ZNF687Q8N1G0 1237 aa12.9□□□□□ -0.34
ZEB1-216ENST00000559496 NCKAP5LQ9HCH0 1330 aa12.89□□□□□ -0.35
ZEB1-216ENST00000559496 SPRYD3Q8NCJ5 442 aa12.89□□□□□ -0.35
ZEB1-216ENST00000559496 KDM4FA0A1W2PPD8 638 aa12.87□□□□□ -0.35
ZEB1-216ENST00000559496 MYO15BQ96JP2 1530 aa12.85□□□□□ -0.35
ZEB1-216ENST00000559496 MMRN1Q13201 1228 aa12.83□□□□□ -0.36
ZEB1-216ENST00000559496 PPP1R15BQ5SWA1 713 aa12.83□□□□□ -0.36
ZEB1-216ENST00000559496 LHX6Q9UPM6 363 aa12.83□□□□□ -0.36
ZEB1-216ENST00000559496 LARP6Q9BRS8 491 aaKnown RBP12.82□□□□□ -0.36
ZEB1-216ENST00000559496 NACADO15069 1562 aa12.81□□□□□ -0.36
ZEB1-216ENST00000559496 TBC1D12O60347 775 aa12.81□□□□□ -0.36
ZEB1-216ENST00000559496 CADPS2Q86UW7 1296 aa12.81□□□□□ -0.36
ZEB1-216ENST00000559496 OXER1Q8TDS5 423 aa12.8□□□□□ -0.36
ZEB1-216ENST00000559496 DDX27Q96GQ7 796 aaKnown RBP12.8□□□□□ -0.36
ZEB1-216ENST00000559496 MFSD10Q14728 455 aa12.79□□□□□ -0.36
ZEB1-216ENST00000559496 PAXIP1Q6ZW49 1069 aaPredicted RBP12.79□□□□□ -0.36
ZEB1-216ENST00000559496 CFAP44Q96MT7 982 aa12.78□□□□□ -0.36
ZEB1-216ENST00000559496 PSDA5PKW4 1024 aaPredicted RBP12.74□□□□□ -0.37
ZEB1-216ENST00000559496 POTEEQ6S8J3 1075 aa12.73□□□□□ -0.37
ZEB1-216ENST00000559496 RB1CC1Q8TDY2 1594 aa12.73□□□□□ -0.37
ZEB1-216ENST00000559496 PBX2P40425 430 aa12.72□□□□□ -0.37
ZEB1-216ENST00000559496 UPF1Q92900 1129 aaKnown RBP eCLIP12.71□□□□□ -0.37
ZEB1-216ENST00000559496 SHROOM4Q9ULL8 1493 aa12.71□□□□□ -0.37
ZEB1-216ENST00000559496 LSM11P83369 360 aaKnown RBP eCLIP12.68□□□□□ -0.38
ZEB1-216ENST00000559496 EMILIN3Q9NT22 766 aa12.65□□□□□ -0.38
ZEB1-216ENST00000559496 ANO8Q9HCE9 1232 aaPredicted RBP12.64□□□□□ -0.39
ZEB1-216ENST00000559496 AXIN2Q9Y2T1 843 aa12.64□□□□□ -0.39
ZEB1-216ENST00000559496 MAP3K9P80192 1104 aa12.63□□□□□ -0.39
ZEB1-216ENST00000559496 PPP4R3BQ5MIZ7 849 aa12.63□□□□□ -0.39
ZEB1-216ENST00000559496 ARHGAP33O14559 1287 aa12.62□□□□□ -0.39
ZEB1-216ENST00000559496 PTGER2P43116 358 aa12.62□□□□□ -0.39
ZEB1-216ENST00000559496 CAMK2BQ13554 666 aa12.62□□□□□ -0.39
ZEB1-216ENST00000559496 SCRIBQ14160 1630 aa12.62□□□□□ -0.39
ZEB1-216ENST00000559496 ANKRD13DQ6ZTN6 518 aa12.61□□□□□ -0.39
ZEB1-216ENST00000559496 EVI5O60447 810 aa12.59□□□□□ -0.39
ZEB1-216ENST00000559496 MYT1LQ9UL68 1186 aa12.58□□□□□ -0.4
ZEB1-216ENST00000559496 FOSBP53539 338 aa12.57□□□□□ -0.4
ZEB1-216ENST00000559496 RNF166Q96A37 237 aaPredicted RBP12.56□□□□□ -0.4
ZEB1-216ENST00000559496 ZNF454Q8N9F8 522 aa12.56□□□□□ -0.4
ZEB1-216ENST00000559496 PSEN2P49810 448 aa12.55□□□□□ -0.4
ZEB1-216ENST00000559496 JPH4Q96JJ6 628 aa12.55□□□□□ -0.4
ZEB1-216ENST00000559496 WDR70Q9NW82 654 aa12.55□□□□□ -0.4
ZEB1-216ENST00000559496 DMRTA1Q5VZB9 504 aa12.54□□□□□ -0.4
ZEB1-216ENST00000559496 ADGRD1Q6QNK2 874 aa12.53□□□□□ -0.4
ZEB1-216ENST00000559496 BCL2L12Q9HB09 334 aa12.53□□□□□ -0.4
ZEB1-216ENST00000559496 TK2O00142 265 aa12.52□□□□□ -0.41
ZEB1-216ENST00000559496 TSHZ2Q9NRE2 1034 aa12.51□□□□□ -0.41
ZEB1-216ENST00000559496 DPYSL4O14531 572 aa12.49□□□□□ -0.41
ZEB1-216ENST00000559496 E2F4Q16254 413 aa12.49□□□□□ -0.41
ZEB1-216ENST00000559496 KCNK17Q96T54 332 aa12.49□□□□□ -0.41
ZEB1-216ENST00000559496 HRO43593 1189 aa12.47□□□□□ -0.41
ZEB1-216ENST00000559496 ZDHHC16Q969W1 377 aa12.47□□□□□ -0.41
ZEB1-216ENST00000559496 KCNH8Q96L42 1107 aa12.45□□□□□ -0.42
ZEB1-216ENST00000559496 ADAM33Q9BZ11 813 aa12.45□□□□□ -0.42
ZEB1-216ENST00000559496 UNC13AQ9UPW8 1703 aa12.45□□□□□ -0.42
ZEB1-216ENST00000559496 PCDHGA10Q9Y5H3 936 aa12.45□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 767.3 ms