RNA–Protein interactions for RNA: ENST00000559460.5

SMAD3-211, Transcript of SMAD family member 3, humanhuman

TSL 4

Gene SMAD3, Length 568 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMAD3-211ENST00000559460 CEBPAP49715 358 aaPredicted RBP16.72■□□□□ 0.27
SMAD3-211ENST00000559460 PLEKHD1A6NEE1 506 aa16.71■□□□□ 0.27
SMAD3-211ENST00000559460 ARHGEF12Q9NZN5 1544 aa16.7■□□□□ 0.26
SMAD3-211ENST00000559460 SIGLEC1Q9BZZ2 1709 aa16.7■□□□□ 0.26
SMAD3-211ENST00000559460 C9orf84Q5VXU9 1444 aa16.68■□□□□ 0.26
SMAD3-211ENST00000559460 HECW1Q76N89 1606 aa16.67■□□□□ 0.26
SMAD3-211ENST00000559460 UBAP1LF5GYI3 381 aa16.66■□□□□ 0.26
SMAD3-211ENST00000559460 ATP10AO60312 1499 aa16.66■□□□□ 0.26
SMAD3-211ENST00000559460 ESF1Q9H501 851 aaKnown RBP16.65■□□□□ 0.26
SMAD3-211ENST00000559460 LTBP4Q8N2S1 1624 aa16.64■□□□□ 0.25
SMAD3-211ENST00000559460 SCAPERQ9BY12 1400 aa16.63■□□□□ 0.25
SMAD3-211ENST00000559460 MYT1LQ9UL68 1186 aa16.63■□□□□ 0.25
SMAD3-211ENST00000559460 NUP153P49790 1475 aaKnown RBP16.62■□□□□ 0.25
SMAD3-211ENST00000559460 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP16.62■□□□□ 0.252e-6■■□□□ 13.3
SMAD3-211ENST00000559460 PRXQ9BXM0 1461 aa16.6■□□□□ 0.25
SMAD3-211ENST00000559460 SAMD9Q5K651 1589 aa16.59■□□□□ 0.25
SMAD3-211ENST00000559460 SETD1BQ9UPS6 1966 aaKnown RBP16.58■□□□□ 0.24
SMAD3-211ENST00000559460 SCAF1Q9H7N4 1312 aaKnown RBP16.57■□□□□ 0.24
SMAD3-211ENST00000559460 PHF23Q9BUL5 403 aaPredicted RBP16.57■□□□□ 0.24
SMAD3-211ENST00000559460 NCOA1Q15788 1441 aa16.56■□□□□ 0.24
SMAD3-211ENST00000559460 TRAPPC8Q9Y2L5 1435 aa16.54■□□□□ 0.24
SMAD3-211ENST00000559460 MED1Q15648 1581 aaPredicted RBP16.54■□□□□ 0.24
SMAD3-211ENST00000559460 RANGAP1P46060 587 aaPredicted RBP16.53■□□□□ 0.24
SMAD3-211ENST00000559460 PLCH2O75038 1416 aa16.53■□□□□ 0.24
SMAD3-211ENST00000559460 EFCAB2Q5VUJ9 269 aa16.52■□□□□ 0.24
SMAD3-211ENST00000559460 ZNF518AQ6AHZ1 1483 aa16.52■□□□□ 0.23
SMAD3-211ENST00000559460 C3P01024 1663 aa16.52■□□□□ 0.23
SMAD3-211ENST00000559460 ZNF335Q9H4Z2 1342 aaPredicted RBP16.51■□□□□ 0.23
SMAD3-211ENST00000559460 CAMSAP1Q5T5Y3 1602 aa16.49■□□□□ 0.23
SMAD3-211ENST00000559460 PIP4K2BP78356 416 aa16.47■□□□□ 0.23
SMAD3-211ENST00000559460 CNTLNQ9NXG0 1405 aa16.46■□□□□ 0.23
SMAD3-211ENST00000559460 HSPA1LP34931 641 aa16.46■□□□□ 0.23
SMAD3-211ENST00000559460 NCKAP5LQ9HCH0 1330 aa16.45■□□□□ 0.22
SMAD3-211ENST00000559460 MYO5CQ9NQX4 1742 aa16.45■□□□□ 0.22
SMAD3-211ENST00000559460 DIP2CQ9Y2E4 1556 aa16.44■□□□□ 0.22
SMAD3-211ENST00000559460 TOM1O60784 492 aa16.44■□□□□ 0.22
SMAD3-211ENST00000559460 REREQ9P2R6 1566 aa16.43■□□□□ 0.22
SMAD3-211ENST00000559460 PKD2Q13563 968 aa16.43■□□□□ 0.22
SMAD3-211ENST00000559460 AFAP1Q8N556 730 aa16.43■□□□□ 0.22
SMAD3-211ENST00000559460 KDM5CP41229 1560 aa16.43■□□□□ 0.22
SMAD3-211ENST00000559460 AGLP35573 1532 aa16.42■□□□□ 0.22
SMAD3-211ENST00000559460 ARHGAP5Q13017 1502 aa16.42■□□□□ 0.22
SMAD3-211ENST00000559460 CDK13Q14004 1512 aaKnown RBP16.42■□□□□ 0.22
SMAD3-211ENST00000559460 NPATQ14207 1427 aa16.41■□□□□ 0.22
SMAD3-211ENST00000559460 ATP1B4Q9UN42 357 aaPredicted RBP16.4■□□□□ 0.22
SMAD3-211ENST00000559460 PPP6R1Q9UPN7 881 aa16.4■□□□□ 0.22
SMAD3-211ENST00000559460 CDK11AQ9UQ88 783 aaPredicted RBP16.4■□□□□ 0.22
SMAD3-211ENST00000559460 PLA2R1Q13018 1463 aa16.38■□□□□ 0.21
SMAD3-211ENST00000559460 ABCA6Q8N139 1617 aa16.37■□□□□ 0.21
SMAD3-211ENST00000559460 MLH3Q9UHC1 1453 aa16.36■□□□□ 0.21
SMAD3-211ENST00000559460 KIF14Q15058 1648 aa16.36■□□□□ 0.21
SMAD3-211ENST00000559460 CSRNP3Q8WYN3 585 aa16.35■□□□□ 0.21
SMAD3-211ENST00000559460 SUPT6HQ7KZ85 1726 aaKnown RBP16.35■□□□□ 0.21
SMAD3-211ENST00000559460 CLIP1P30622 1438 aa16.34■□□□□ 0.21
SMAD3-211ENST00000559460 MROH2AA6NES4 1674 aa16.34■□□□□ 0.21
SMAD3-211ENST00000559460 ZMYM3Q14202 1370 aa16.33■□□□□ 0.2
SMAD3-211ENST00000559460 CPS1P31327 1500 aa16.32■□□□□ 0.2
SMAD3-211ENST00000559460 ZNF142P52746 1687 aaPredicted RBP16.31■□□□□ 0.2
SMAD3-211ENST00000559460 MYO3AQ8NEV4 1616 aa16.31■□□□□ 0.2
SMAD3-211ENST00000559460 TCOF1Q13428 1488 aaKnown RBP16.31■□□□□ 0.2
SMAD3-211ENST00000559460 CEP170BQ9Y4F5 1589 aaPredicted RBP16.3■□□□□ 0.2
SMAD3-211ENST00000559460 PTPRKQ15262 1439 aa16.3■□□□□ 0.2
SMAD3-211ENST00000559460 SENP3Q9H4L4 574 aaPredicted RBP16.28■□□□□ 0.2
SMAD3-211ENST00000559460 TROQ12816 1431 aaPredicted RBP16.27■□□□□ 0.19
SMAD3-211ENST00000559460 FMN1Q68DA7 1419 aa16.25■□□□□ 0.19
SMAD3-211ENST00000559460 ABCC1P33527 1531 aa16.24■□□□□ 0.19
SMAD3-211ENST00000559460 SHANK2Q9UPX8 1470 aa16.23■□□□□ 0.19
SMAD3-211ENST00000559460 CLTCQ00610 1675 aaKnown RBP16.22■□□□□ 0.19
SMAD3-211ENST00000559460 ITSN2Q9NZM3 1697 aa16.22■□□□□ 0.19
SMAD3-211ENST00000559460 KIDINS220Q9ULH0 1771 aa16.22■□□□□ 0.19
SMAD3-211ENST00000559460 A2ML1A8K2U0 1454 aa16.2■□□□□ 0.18
SMAD3-211ENST00000559460 GGT6Q6P531 493 aa16.19■□□□□ 0.18
SMAD3-211ENST00000559460 CDC42BPBQ9Y5S2 1711 aa16.19■□□□□ 0.18
SMAD3-211ENST00000559460 PREX2Q70Z35 1606 aa16.19■□□□□ 0.18
SMAD3-211ENST00000559460 POLR1AO95602 1720 aaPredicted RBP16.18■□□□□ 0.18
SMAD3-211ENST00000559460 EEA1Q15075 1411 aa16.18■□□□□ 0.18
SMAD3-211ENST00000559460 SPAG9O60271 1321 aaKnown RBP16.18■□□□□ 0.18
SMAD3-211ENST00000559460 ZNF777Q9ULD5 760 aaPredicted RBP16.16■□□□□ 0.18
SMAD3-211ENST00000559460 DNMT1P26358 1616 aaKnown RBP16.16■□□□□ 0.18
SMAD3-211ENST00000559460 ANKLE2Q86XL3 938 aa16.15■□□□□ 0.18
SMAD3-211ENST00000559460 SAMD9LQ8IVG5 1584 aa16.14■□□□□ 0.17
SMAD3-211ENST00000559460 A2MP01023 1474 aa16.13■□□□□ 0.17
SMAD3-211ENST00000559460 NEURL4Q96JN8 1562 aa16.12■□□□□ 0.17
SMAD3-211ENST00000559460 ATP7AQ04656 1500 aa16.11■□□□□ 0.17
SMAD3-211ENST00000559460 RGS17Q9UGC6 210 aaPredicted RBP16.11■□□□□ 0.17
SMAD3-211ENST00000559460 RNF17Q9BXT8 1623 aaKnown RBP16.11■□□□□ 0.17
SMAD3-211ENST00000559460 TNRQ92752 1358 aa16.1■□□□□ 0.17
SMAD3-211ENST00000559460 SYCP2Q9BX26 1530 aa16.09■□□□□ 0.17
SMAD3-211ENST00000559460 VWDEQ8N2E2 1590 aa16.09■□□□□ 0.17
SMAD3-211ENST00000559460 THEMISQ8N1K5 641 aaPredicted RBP16.09■□□□□ 0.17
SMAD3-211ENST00000559460 NPHP4O75161 1426 aaPredicted RBP16.09■□□□□ 0.17
SMAD3-211ENST00000559460 PLXNC1O60486 1568 aa16.09■□□□□ 0.17
SMAD3-211ENST00000559460 ALKQ9UM73 1620 aa16.08■□□□□ 0.17
SMAD3-211ENST00000559460 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP16.08■□□□□ 0.161e-7■□□□□ 10.3
SMAD3-211ENST00000559460 SYNMO15061 1565 aa16.06■□□□□ 0.16
SMAD3-211ENST00000559460 FAM135AQ9P2D6 1515 aa16.06■□□□□ 0.16
SMAD3-211ENST00000559460 UBTFP17480 764 aaKnown RBP16.06■□□□□ 0.16
SMAD3-211ENST00000559460 HNRNPMP52272 730 aaKnown RBP eCLIP16.06■□□□□ 0.167e-7■■■■□ 23.1
SMAD3-211ENST00000559460 CCDC18Q5T9S5 1454 aa16.05■□□□□ 0.16
SMAD3-211ENST00000559460 POTEAQ6S8J7 498 aa16.05■□□□□ 0.16
Retrieved 100 of 20,778 RNA–protein pairs in 33.5 ms