RNA–Protein interactions for RNA: ENST00000559347.1

SPG11-216, Transcript of SPG11, spatacsin vesicle trafficking associated, humanhuman

TSL 5

Gene SPG11, Length 716 nt, Biotype processed transcript, Subcellular localisation Nucleus .

RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPG11-216ENST00000559347 DENND4BO75064 1496 aaPredicted RBP17.69■□□□□ 0.42
SPG11-216ENST00000559347 ARHGAP5Q13017 1502 aa17.68■□□□□ 0.42
SPG11-216ENST00000559347 KDM4FA0A1W2PPD8 638 aa17.68■□□□□ 0.42
SPG11-216ENST00000559347 RAPGEF3O95398 923 aa17.66■□□□□ 0.42
SPG11-216ENST00000559347 POGZQ7Z3K3 1410 aa17.65■□□□□ 0.42
SPG11-216ENST00000559347 ITSN2Q9NZM3 1697 aa17.65■□□□□ 0.42
SPG11-216ENST00000559347 EHBP1L1Q8N3D4 1523 aa17.64■□□□□ 0.41
SPG11-216ENST00000559347 ABCC1P33527 1531 aa17.63■□□□□ 0.41
SPG11-216ENST00000559347 ZFYVE16Q7Z3T8 1539 aa17.62■□□□□ 0.41
SPG11-216ENST00000559347 KDM5CP41229 1560 aa17.62■□□□□ 0.41
SPG11-216ENST00000559347 SIGLEC1Q9BZZ2 1709 aa17.62■□□□□ 0.41
SPG11-216ENST00000559347 BCORL1Q5H9F3 1711 aa17.61■□□□□ 0.41
SPG11-216ENST00000559347 SCAPERQ9BY12 1400 aa17.61■□□□□ 0.41
SPG11-216ENST00000559347 LOC105371045A0A1W2PR82 267 aa17.6■□□□□ 0.41
SPG11-216ENST00000559347 ADAMTSL3P82987 1691 aa17.6■□□□□ 0.41
SPG11-216ENST00000559347 TIAM1Q13009 1591 aa17.59■□□□□ 0.41
SPG11-216ENST00000559347 SAMD9LQ8IVG5 1584 aa17.59■□□□□ 0.41
SPG11-216ENST00000559347 ZNF518AQ6AHZ1 1483 aa17.59■□□□□ 0.41
SPG11-216ENST00000559347 MAGI2Q86UL8 1455 aa17.59■□□□□ 0.41
SPG11-216ENST00000559347 HECW2Q9P2P5 1572 aa17.58■□□□□ 0.41
SPG11-216ENST00000559347 VPS8Q8N3P4 1428 aa17.58■□□□□ 0.41
SPG11-216ENST00000559347 EFCAB2Q5VUJ9 269 aa17.57■□□□□ 0.4
SPG11-216ENST00000559347 YEATS2Q9ULM3 1422 aa17.56■□□□□ 0.4
SPG11-216ENST00000559347 SUPT6HQ7KZ85 1726 aaKnown RBP17.55■□□□□ 0.4
SPG11-216ENST00000559347 MTUS2Q5JR59 1369 aa17.55■□□□□ 0.4
SPG11-216ENST00000559347 GPATCH8Q9UKJ3 1502 aaKnown RBP17.55■□□□□ 0.4
SPG11-216ENST00000559347 MADDQ8WXG6 1647 aa17.54■□□□□ 0.4
SPG11-216ENST00000559347 FOXD1Q16676 465 aa17.54■□□□□ 0.4
SPG11-216ENST00000559347 ABCA6Q8N139 1617 aa17.54■□□□□ 0.4
SPG11-216ENST00000559347 DIP2CQ9Y2E4 1556 aa17.53■□□□□ 0.4
SPG11-216ENST00000559347 SYCP2Q9BX26 1530 aa17.53■□□□□ 0.4
SPG11-216ENST00000559347 ARHGEF12Q9NZN5 1544 aa17.53■□□□□ 0.4
SPG11-216ENST00000559347 KIDINS220Q9ULH0 1771 aa17.51■□□□□ 0.39
SPG11-216ENST00000559347 RIMS1Q86UR5 1692 aaKnown RBP17.5■□□□□ 0.39
SPG11-216ENST00000559347 REREQ9P2R6 1566 aa17.49■□□□□ 0.39
SPG11-216ENST00000559347 FER1L4A9Z1Z3 1794 aa17.49■□□□□ 0.39
SPG11-216ENST00000559347 C9orf84Q5VXU9 1444 aa17.48■□□□□ 0.39
SPG11-216ENST00000559347 TRAPPC8Q9Y2L5 1435 aa17.48■□□□□ 0.39
SPG11-216ENST00000559347 CCNB3Q8WWL7 1395 aa17.48■□□□□ 0.39
SPG11-216ENST00000559347 MLH3Q9UHC1 1453 aa17.48■□□□□ 0.39
SPG11-216ENST00000559347 MAP3K1Q13233 1512 aa17.47■□□□□ 0.39
SPG11-216ENST00000559347 NCOA2Q15596 1464 aa17.47■□□□□ 0.39
SPG11-216ENST00000559347 INO80Q9ULG1 1556 aaPredicted RBP17.47■□□□□ 0.39
SPG11-216ENST00000559347 ATP10AO60312 1499 aa17.46■□□□□ 0.39
SPG11-216ENST00000559347 LRRC9Q6ZRR7 1453 aa17.45■□□□□ 0.38
SPG11-216ENST00000559347 PLEKHH2Q8IVE3 1493 aa17.45■□□□□ 0.38
SPG11-216ENST00000559347 PTPRMP28827 1452 aa17.44■□□□□ 0.38
SPG11-216ENST00000559347 AFAP1Q8N556 730 aa17.43■□□□□ 0.38
SPG11-216ENST00000559347 ARID4BQ4LE39 1312 aaPredicted RBP17.43■□□□□ 0.38
SPG11-216ENST00000559347 KIAA1107Q9UPP5 1409 aa17.42■□□□□ 0.38
SPG11-216ENST00000559347 ATP7AQ04656 1500 aa17.42■□□□□ 0.38
SPG11-216ENST00000559347 CFDP1Q9UEE9 299 aaPredicted RBP17.4■□□□□ 0.38
SPG11-216ENST00000559347 ZNF777Q9ULD5 760 aaPredicted RBP17.4■□□□□ 0.38
SPG11-216ENST00000559347 CAMSAP2Q08AD1 1489 aa17.39■□□□□ 0.37
SPG11-216ENST00000559347 AGLP35573 1532 aa17.38■□□□□ 0.37
SPG11-216ENST00000559347 ADGBQ8N7X0 1667 aa17.38■□□□□ 0.37
SPG11-216ENST00000559347 PLXNC1O60486 1568 aa17.37■□□□□ 0.37
SPG11-216ENST00000559347 MBD5Q9P267 1494 aa17.37■□□□□ 0.37
SPG11-216ENST00000559347 ARHGEF5Q12774 1597 aa17.35■□□□□ 0.37
SPG11-216ENST00000559347 HNRNPMP52272 730 aaKnown RBP eCLIP17.33■□□□□ 0.36
SPG11-216ENST00000559347 CCDC141Q6ZP82 1450 aa17.32■□□□□ 0.36
SPG11-216ENST00000559347 ZNF644Q9H582 1327 aaPredicted RBP17.32■□□□□ 0.36
SPG11-216ENST00000559347 MYT1LQ9UL68 1186 aa17.32■□□□□ 0.36
SPG11-216ENST00000559347 SPAG9O60271 1321 aaKnown RBP17.31■□□□□ 0.36
SPG11-216ENST00000559347 KANK4Q5T7N3 995 aaPredicted RBP17.31■□□□□ 0.36
SPG11-216ENST00000559347 MYOM3Q5VTT5 1437 aa17.3■□□□□ 0.36
SPG11-216ENST00000559347 C3P01024 1663 aa17.3■□□□□ 0.36
SPG11-216ENST00000559347 CROCC2H7BZ55 1655 aa17.29■□□□□ 0.36
SPG11-216ENST00000559347 MLECQ14165 292 aa17.29■□□□□ 0.36
SPG11-216ENST00000559347 MROH2AA6NES4 1674 aa17.29■□□□□ 0.36
SPG11-216ENST00000559347 A2MP01023 1474 aa17.28■□□□□ 0.36
SPG11-216ENST00000559347 PREX1Q8TCU6 1659 aa17.28■□□□□ 0.36
SPG11-216ENST00000559347 MAST1Q9Y2H9 1570 aa17.28■□□□□ 0.36
SPG11-216ENST00000559347 RTEL1-TNFRSF6BF6WH68 1400 aa17.27■□□□□ 0.35
SPG11-216ENST00000559347 MIA2Q96PC5 1412 aa17.27■□□□□ 0.35
SPG11-216ENST00000559347 LMTK3Q96Q04 1460 aa17.26■□□□□ 0.35
SPG11-216ENST00000559347 PTPN23Q9H3S7 1636 aa17.25■□□□□ 0.35
SPG11-216ENST00000559347 CLTCQ00610 1675 aaKnown RBP17.24■□□□□ 0.35
SPG11-216ENST00000559347 PLPPR3Q6T4P5 718 aa17.24■□□□□ 0.35
SPG11-216ENST00000559347 APLP2Q06481 763 aa17.21■□□□□ 0.35
SPG11-216ENST00000559347 DNMT1P26358 1616 aaKnown RBP17.21■□□□□ 0.35
SPG11-216ENST00000559347 CNTLNQ9NXG0 1405 aa17.2■□□□□ 0.34
SPG11-216ENST00000559347 TCOF1Q13428 1488 aaKnown RBP17.18■□□□□ 0.34
SPG11-216ENST00000559347 FGD6Q6ZV73 1430 aa17.18■□□□□ 0.34
SPG11-216ENST00000559347 EIF2AK4Q9P2K8 1649 aaKnown RBP17.18■□□□□ 0.34
SPG11-216ENST00000559347 RSPH4AQ5TD94 716 aa17.17■□□□□ 0.34
SPG11-216ENST00000559347 RNF17Q9BXT8 1623 aaKnown RBP17.17■□□□□ 0.34
SPG11-216ENST00000559347 SHANK2Q9UPX8 1470 aa17.17■□□□□ 0.34
SPG11-216ENST00000559347 FAM135AQ9P2D6 1515 aa17.16■□□□□ 0.34
SPG11-216ENST00000559347 DHX29Q7Z478 1369 aaKnown RBP17.15■□□□□ 0.34
SPG11-216ENST00000559347 SETD1BQ9UPS6 1966 aaKnown RBP17.15■□□□□ 0.34
SPG11-216ENST00000559347 CEBPAP49715 358 aaPredicted RBP17.13■□□□□ 0.33
SPG11-216ENST00000559347 ZC3H13Q5T200 1668 aaKnown RBP17.13■□□□□ 0.33
SPG11-216ENST00000559347 KDM5DQ9BY66 1539 aa17.12■□□□□ 0.33
SPG11-216ENST00000559347 MYO3AQ8NEV4 1616 aa17.12■□□□□ 0.33
SPG11-216ENST00000559347 ZNF142P52746 1687 aaPredicted RBP17.12■□□□□ 0.33
SPG11-216ENST00000559347 ESF1Q9H501 851 aaKnown RBP17.11■□□□□ 0.33
SPG11-216ENST00000559347 DAPK1P53355 1430 aa17.11■□□□□ 0.33
SPG11-216ENST00000559347 MROH1Q8NDA8 1641 aa17.1■□□□□ 0.33
SPG11-216ENST00000559347 ABCC5O15440 1437 aa17.1■□□□□ 0.33
Retrieved 100 of 20,778 RNA–protein pairs in 15.5 ms