RNA–Protein interactions for RNA: ENST00000556083.1

ACTN1-216, Transcript of actinin alpha 1, humanhuman

TSL 1 (best)

Gene ACTN1, Length 4,674 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ACTN1-216ENST00000556083 SRPK2P78362 688 aaKnown RBP13.63□□□□□ -0.23
ACTN1-216ENST00000556083 NBR1Q14596 966 aa13.63□□□□□ -0.23
ACTN1-216ENST00000556083 ARXQ96QS3 562 aa13.63□□□□□ -0.23
ACTN1-216ENST00000556083 EIF4G1Q04637 1599 aaKnown RBP13.63□□□□□ -0.23
ACTN1-216ENST00000556083 PDE3BQ13370 1112 aa13.62□□□□□ -0.23
ACTN1-216ENST00000556083 LMOD2Q6P5Q4 547 aa13.61□□□□□ -0.23
ACTN1-216ENST00000556083 STAC3Q96MF2 364 aa13.61□□□□□ -0.23
ACTN1-216ENST00000556083 TERF2IPQ9NYB0 399 aa13.61□□□□□ -0.23
ACTN1-216ENST00000556083 UACAQ9BZF9 1416 aa13.61□□□□□ -0.23
ACTN1-216ENST00000556083 CCDC18Q5T9S5 1454 aa13.61□□□□□ -0.23
ACTN1-216ENST00000556083 LAS1LQ9Y4W2 734 aaKnown RBP13.61□□□□□ -0.23
ACTN1-216ENST00000556083 SOGA1O94964 1423 aa13.61□□□□□ -0.23
ACTN1-216ENST00000556083 CHAF1AQ13111 956 aaPredicted RBP13.61□□□□□ -0.23
ACTN1-216ENST00000556083 NGEFQ8N5V2 710 aa13.61□□□□□ -0.23
ACTN1-216ENST00000556083 DNTTIP2Q5QJE6 756 aaKnown RBP13.59□□□□□ -0.23
ACTN1-216ENST00000556083 SPAG9O60271 1321 aaKnown RBP13.59□□□□□ -0.23
ACTN1-216ENST00000556083 FRAT1Q92837 279 aaPredicted RBP13.59□□□□□ -0.23
ACTN1-216ENST00000556083 KIAA1211Q6ZU35 1233 aa13.58□□□□□ -0.23
ACTN1-216ENST00000556083 RWDD1Q9H446 243 aaPredicted RBP13.58□□□□□ -0.23
ACTN1-216ENST00000556083 SUPT16HQ9Y5B9 1047 aaKnown RBP13.58□□□□□ -0.23
ACTN1-216ENST00000556083 TMX4Q9H1E5 349 aaPredicted RBP13.58□□□□□ -0.24
ACTN1-216ENST00000556083 HMMRO75330 724 aa13.58□□□□□ -0.24
ACTN1-216ENST00000556083 EID1Q9Y6B2 187 aa13.58□□□□□ -0.24
ACTN1-216ENST00000556083 NEUROD2Q15784 382 aa13.57□□□□□ -0.24
ACTN1-216ENST00000556083 PMFBP1Q8TBY8 1022 aa13.56□□□□□ -0.24
ACTN1-216ENST00000556083 GPATCH3Q96I76 525 aa13.56□□□□□ -0.24
ACTN1-216ENST00000556083 PKD2Q13563 968 aa13.56□□□□□ -0.24
ACTN1-216ENST00000556083 SYAP1Q96A49 352 aaPredicted RBP13.55□□□□□ -0.24
ACTN1-216ENST00000556083 HIRIP3Q9BW71 556 aaPredicted RBP13.55□□□□□ -0.24
ACTN1-216ENST00000556083 USP35Q9P2H5 1018 aa13.55□□□□□ -0.24
ACTN1-216ENST00000556083 CSPP1Q1MSJ5 1256 aa13.54□□□□□ -0.24
ACTN1-216ENST00000556083 GBP4Q96PP9 640 aa13.54□□□□□ -0.24
ACTN1-216ENST00000556083 CADPSQ9ULU8 1353 aa13.54□□□□□ -0.24
ACTN1-216ENST00000556083 STK31Q9BXU1 1019 aa13.54□□□□□ -0.24
ACTN1-216ENST00000556083 RAPGEF2Q9Y4G8 1499 aa13.54□□□□□ -0.24
ACTN1-216ENST00000556083 NOP58Q9Y2X3 529 aaKnown RBP13.53□□□□□ -0.24
ACTN1-216ENST00000556083 KIF3AQ9Y496 699 aa13.53□□□□□ -0.24
ACTN1-216ENST00000556083 NUP155O75694 1391 aa13.53□□□□□ -0.24
ACTN1-216ENST00000556083 CC2D1BQ5T0F9 858 aaKnown RBP13.53□□□□□ -0.24
ACTN1-216ENST00000556083 TCERG1O14776 1098 aaKnown RBP13.52□□□□□ -0.24
ACTN1-216ENST00000556083 TOP2AP11388 1531 aaKnown RBP13.52□□□□□ -0.25
ACTN1-216ENST00000556083 IRX6P78412 446 aaPredicted RBP13.52□□□□□ -0.25
ACTN1-216ENST00000556083 CCDC88BA6NC98 1476 aa13.51□□□□□ -0.25
ACTN1-216ENST00000556083 ANO8Q9HCE9 1232 aaPredicted RBP13.51□□□□□ -0.25
ACTN1-216ENST00000556083 RGS3P49796 1198 aa13.5□□□□□ -0.25
ACTN1-216ENST00000556083 SIN3AQ96ST3 1273 aa13.5□□□□□ -0.25
ACTN1-216ENST00000556083 GGT6Q6P531 493 aa13.5□□□□□ -0.25
ACTN1-216ENST00000556083 KIAA2012Q0VF49 1180 aa13.5□□□□□ -0.25
ACTN1-216ENST00000556083 MPHOSPH9Q99550 1183 aa13.5□□□□□ -0.25
ACTN1-216ENST00000556083 TRHP20396 242 aaPredicted RBP13.49□□□□□ -0.25
ACTN1-216ENST00000556083 TPM4P67936 248 aa13.49□□□□□ -0.25
ACTN1-216ENST00000556083 CECR2Q9BXF3 1484 aa13.49□□□□□ -0.25
ACTN1-216ENST00000556083 NLRP13Q86W25 1043 aa13.49□□□□□ -0.25
ACTN1-216ENST00000556083 HSPA5P11021 654 aaKnown RBP13.48□□□□□ -0.25
ACTN1-216ENST00000556083 GNL2Q13823 731 aaKnown RBP13.47□□□□□ -0.25
ACTN1-216ENST00000556083 LRRFIP1Q32MZ4 808 aaKnown RBP13.46□□□□□ -0.25
ACTN1-216ENST00000556083 U2AF1L5P0DN76 240 aaPredicted RBP13.45□□□□□ -0.26
ACTN1-216ENST00000556083 MSNP26038 577 aaKnown RBP13.45□□□□□ -0.26
ACTN1-216ENST00000556083 U2AF1Q01081 240 aaKnown RBP eCLIP13.45□□□□□ -0.26
ACTN1-216ENST00000556083 WWC1Q8IX03 1113 aa13.45□□□□□ -0.26
ACTN1-216ENST00000556083 RCAN3Q9UKA8 241 aa13.44□□□□□ -0.26
ACTN1-216ENST00000556083 CSB-PGBD3P0DP91 1061 aa13.44□□□□□ -0.26
ACTN1-216ENST00000556083 VGFO15240 615 aaPredicted RBP13.43□□□□□ -0.26
ACTN1-216ENST00000556083 NAP1L2Q9ULW6 460 aaPredicted RBP13.43□□□□□ -0.26
ACTN1-216ENST00000556083 PLEKHG5O94827 1062 aa13.43□□□□□ -0.26
ACTN1-216ENST00000556083 KIF3BO15066 747 aa13.41□□□□□ -0.26
ACTN1-216ENST00000556083 AAMPQ13685 434 aa13.41□□□□□ -0.26
ACTN1-216ENST00000556083 RAB3GAP2Q9H2M9 1393 aa13.41□□□□□ -0.26
ACTN1-216ENST00000556083 WASHC2CQ9Y4E1 1318 aa13.41□□□□□ -0.26
ACTN1-216ENST00000556083 KIF15Q9NS87 1388 aa13.41□□□□□ -0.26
ACTN1-216ENST00000556083 MROH2BQ7Z745 1585 aa13.4□□□□□ -0.26
ACTN1-216ENST00000556083 PLCB2Q00722 1185 aa13.4□□□□□ -0.26
ACTN1-216ENST00000556083 PHF14O94880 888 aa13.4□□□□□ -0.26
ACTN1-216ENST00000556083 MLECQ14165 292 aa13.4□□□□□ -0.26
ACTN1-216ENST00000556083 GORABQ5T7V8 394 aa13.4□□□□□ -0.26
ACTN1-216ENST00000556083 CCDC144AA2RUR9 1427 aa13.38□□□□□ -0.27
ACTN1-216ENST00000556083 TDRD9Q8NDG6 1382 aaKnown RBP13.38□□□□□ -0.27
ACTN1-216ENST00000556083 JPH4Q96JJ6 628 aa13.38□□□□□ -0.27
ACTN1-216ENST00000556083 TAF7LQ5H9L4 462 aa13.37□□□□□ -0.27
ACTN1-216ENST00000556083 ABCF1Q8NE71 845 aaKnown RBP eCLIP13.37□□□□□ -0.27
ACTN1-216ENST00000556083 NGDNQ8NEJ9 315 aaKnown RBP13.37□□□□□ -0.27
ACTN1-216ENST00000556083 ATP6V1DQ9Y5K8 247 aa13.36□□□□□ -0.27
ACTN1-216ENST00000556083 DRC7Q8IY82 874 aa13.36□□□□□ -0.27
ACTN1-216ENST00000556083 ITPRIPQ8IWB1 547 aa13.36□□□□□ -0.27
ACTN1-216ENST00000556083 EVC2Q86UK5 1308 aa13.36□□□□□ -0.27
ACTN1-216ENST00000556083 STK26Q9P289 416 aa13.35□□□□□ -0.27
ACTN1-216ENST00000556083 CENPJQ9HC77 1338 aaPredicted RBP13.35□□□□□ -0.27
ACTN1-216ENST00000556083 PAK3O75914 559 aaPredicted RBP13.35□□□□□ -0.27
ACTN1-216ENST00000556083 NAP1L5Q96NT1 182 aaPredicted RBP13.35□□□□□ -0.27
ACTN1-216ENST00000556083 ST18O60284 1047 aa13.35□□□□□ -0.27
ACTN1-216ENST00000556083 CGNL1Q0VF96 1302 aa13.34□□□□□ -0.27
ACTN1-216ENST00000556083 AMPHP49418 695 aa13.34□□□□□ -0.27
ACTN1-216ENST00000556083 AEBP2Q6ZN18 517 aaPredicted RBP13.34□□□□□ -0.27
ACTN1-216ENST00000556083 SMC4Q9NTJ3 1288 aa13.34□□□□□ -0.27
ACTN1-216ENST00000556083 MYBBP1AQ9BQG0 1328 aaKnown RBP13.34□□□□□ -0.27
ACTN1-216ENST00000556083 PTPRGP23470 1445 aa13.33□□□□□ -0.28
ACTN1-216ENST00000556083 ROCK1Q13464 1354 aa13.33□□□□□ -0.28
ACTN1-216ENST00000556083 ATAD2BQ9ULI0 1458 aa13.32□□□□□ -0.28
ACTN1-216ENST00000556083 HMGB2P26583 209 aaKnown RBP13.31□□□□□ -0.28
ACTN1-216ENST00000556083 B4GALNT3Q6L9W6 998 aa13.31□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 99.6 ms