RNA–Protein interactions for RNA: ENST00000555953.1

SCFD1-217, Transcript of sec1 family domain containing 1, humanhuman

TSL 5

Gene SCFD1, Length 497 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-217ENST00000555953 ZNF710Q8N1W2 664 aa12.94□□□□□ -0.34
SCFD1-217ENST00000555953 POTEB3A0JP26 581 aa12.91□□□□□ -0.34
SCFD1-217ENST00000555953 HOXB1P14653 301 aaPredicted RBP12.91□□□□□ -0.34
SCFD1-217ENST00000555953 POTEBQ6S5H4 581 aa12.91□□□□□ -0.34
SCFD1-217ENST00000555953 FAM205CA6NFA0 338 aa12.9□□□□□ -0.34
SCFD1-217ENST00000555953 KIF3CO14782 793 aa12.88□□□□□ -0.35
SCFD1-217ENST00000555953 HS3ST6Q96QI5 342 aa12.88□□□□□ -0.35
SCFD1-217ENST00000555953 C2orf72A6NCS6 295 aa12.87□□□□□ -0.35
SCFD1-217ENST00000555953 RIMBP2O15034 1052 aa12.87□□□□□ -0.35
SCFD1-217ENST00000555953 NKX1-1Q15270 411 aaPredicted RBP12.86□□□□□ -0.35
SCFD1-217ENST00000555953 DNAJC5Q9H3Z4 198 aa12.85□□□□□ -0.35
SCFD1-217ENST00000555953 ZSWIM6Q9HCJ5 1215 aa12.84□□□□□ -0.35
SCFD1-217ENST00000555953 GPR153Q6NV75 609 aa12.82□□□□□ -0.36
SCFD1-217ENST00000555953 TMC2Q8TDI7 906 aa12.79□□□□□ -0.36
SCFD1-217ENST00000555953 ERBB3P21860 1342 aa12.79□□□□□ -0.36
SCFD1-217ENST00000555953 ARSIQ5FYB1 569 aa12.78□□□□□ -0.36
SCFD1-217ENST00000555953 KRTAP3-3Q9BYR6 98 aa12.77□□□□□ -0.37
SCFD1-217ENST00000555953 KRTAP3-2Q9BYR7 98 aa12.77□□□□□ -0.37
SCFD1-217ENST00000555953 KHSRPQ92945 711 aaKnown RBP eCLIP12.75□□□□□ -0.37
SCFD1-217ENST00000555953 DCAF8L2P0C7V8 631 aa12.74□□□□□ -0.37
SCFD1-217ENST00000555953 VARS2Q5ST30 1063 aaKnown RBP12.74□□□□□ -0.37
SCFD1-217ENST00000555953 SPNS2Q8IVW8 549 aa12.72□□□□□ -0.37
SCFD1-217ENST00000555953 RYDENQ9NUL5 291 aaKnown RBP12.7□□□□□ -0.38
SCFD1-217ENST00000555953 SLC34A2O95436 690 aa12.69□□□□□ -0.38
SCFD1-217ENST00000555953 GPHNQ9NQX3 736 aaPredicted RBP12.67□□□□□ -0.38
SCFD1-217ENST00000555953 GTPBP6O43824 516 aaPredicted RBP12.66□□□□□ -0.38
SCFD1-217ENST00000555953 PCDHGA4Q9Y5G9 962 aa12.66□□□□□ -0.38
SCFD1-217ENST00000555953 ZNF316A6NFI3 1004 aaPredicted RBP12.65□□□□□ -0.38
SCFD1-217ENST00000555953 NUDT7P0C024 238 aa12.65□□□□□ -0.38
SCFD1-217ENST00000555953 FOXK1P85037 733 aa12.65□□□□□ -0.38
SCFD1-217ENST00000555953 MMRN1Q13201 1228 aa12.65□□□□□ -0.38
SCFD1-217ENST00000555953 DSG2Q14126 1118 aa12.63□□□□□ -0.39
SCFD1-217ENST00000555953 PLPP6Q8IY26 295 aa12.63□□□□□ -0.39
SCFD1-217ENST00000555953 ZNF687Q8N1G0 1237 aa12.62□□□□□ -0.39
SCFD1-217ENST00000555953 PTCD2Q8WV60 388 aaKnown RBP12.58□□□□□ -0.4
SCFD1-217ENST00000555953 CRISPLD2Q9H0B8 497 aa12.58□□□□□ -0.4
SCFD1-217ENST00000555953 LHX6Q9UPM6 363 aa12.57□□□□□ -0.4
SCFD1-217ENST00000555953 NCKAP5LQ9HCH0 1330 aa12.55□□□□□ -0.4
SCFD1-217ENST00000555953 KDM4FA0A1W2PPD8 638 aa12.54□□□□□ -0.4
SCFD1-217ENST00000555953 AMER1Q5JTC6 1135 aaPredicted RBP12.51□□□□□ -0.41
SCFD1-217ENST00000555953 PPP1R15BQ5SWA1 713 aa12.5□□□□□ -0.41
SCFD1-217ENST00000555953 RTN4Q9NQC3 1192 aaKnown RBP12.5□□□□□ -0.41
SCFD1-217ENST00000555953 PDE4AP27815 886 aa12.49□□□□□ -0.41
SCFD1-217ENST00000555953 POTEEQ6S8J3 1075 aa12.47□□□□□ -0.41
SCFD1-217ENST00000555953 OXER1Q8TDS5 423 aa12.47□□□□□ -0.41
SCFD1-217ENST00000555953 UPF1Q92900 1129 aaKnown RBP eCLIP12.46□□□□□ -0.41
SCFD1-217ENST00000555953 TBC1D12O60347 775 aa12.45□□□□□ -0.42
SCFD1-217ENST00000555953 CADPS2Q86UW7 1296 aa12.45□□□□□ -0.42
SCFD1-217ENST00000555953 LARP6Q9BRS8 491 aaKnown RBP12.45□□□□□ -0.42
SCFD1-217ENST00000555953 LSM11P83369 360 aaKnown RBP eCLIP12.44□□□□□ -0.42
SCFD1-217ENST00000555953 ANKRD13DQ6ZTN6 518 aa12.44□□□□□ -0.42
SCFD1-217ENST00000555953 AXIN2Q9Y2T1 843 aa12.44□□□□□ -0.42
SCFD1-217ENST00000555953 PBX2P40425 430 aa12.43□□□□□ -0.42
SCFD1-217ENST00000555953 BBXQ8WY36 941 aaPredicted RBP12.43□□□□□ -0.42
SCFD1-217ENST00000555953 PSDA5PKW4 1024 aaPredicted RBP12.42□□□□□ -0.42
SCFD1-217ENST00000555953 DDX27Q96GQ7 796 aaKnown RBP12.42□□□□□ -0.42
SCFD1-217ENST00000555953 MFSD10Q14728 455 aa12.41□□□□□ -0.42
SCFD1-217ENST00000555953 MYT1LQ9UL68 1186 aa12.38□□□□□ -0.43
SCFD1-217ENST00000555953 RNF166Q96A37 237 aaPredicted RBP12.37□□□□□ -0.43
SCFD1-217ENST00000555953 ARHGAP33O14559 1287 aa12.35□□□□□ -0.43
SCFD1-217ENST00000555953 PPP4R3BQ5MIZ7 849 aa12.35□□□□□ -0.43
SCFD1-217ENST00000555953 PTGER2P43116 358 aa12.34□□□□□ -0.43
SCFD1-217ENST00000555953 EMILIN3Q9NT22 766 aa12.32□□□□□ -0.44
SCFD1-217ENST00000555953 PSEN2P49810 448 aa12.31□□□□□ -0.44
SCFD1-217ENST00000555953 EVI5O60447 810 aa12.3□□□□□ -0.44
SCFD1-217ENST00000555953 DMRTA1Q5VZB9 504 aa12.3□□□□□ -0.44
SCFD1-217ENST00000555953 ZNF454Q8N9F8 522 aa12.29□□□□□ -0.44
SCFD1-217ENST00000555953 SPRYD3Q8NCJ5 442 aa12.29□□□□□ -0.44
SCFD1-217ENST00000555953 ANO8Q9HCE9 1232 aaPredicted RBP12.29□□□□□ -0.44
SCFD1-217ENST00000555953 ADGRD1Q6QNK2 874 aa12.28□□□□□ -0.44
SCFD1-217ENST00000555953 ZBTB4Q9P1Z0 1013 aaPredicted RBP12.28□□□□□ -0.44
SCFD1-217ENST00000555953 FOSBP53539 338 aa12.27□□□□□ -0.45
SCFD1-217ENST00000555953 MAP3K9P80192 1104 aa12.27□□□□□ -0.45
SCFD1-217ENST00000555953 KCNK17Q96T54 332 aa12.26□□□□□ -0.45
SCFD1-217ENST00000555953 TK2O00142 265 aa12.23□□□□□ -0.45
SCFD1-217ENST00000555953 CAMK2BQ13554 666 aa12.23□□□□□ -0.45
SCFD1-217ENST00000555953 JPH4Q96JJ6 628 aa12.23□□□□□ -0.45
SCFD1-217ENST00000555953 PAXIP1Q6ZW49 1069 aaPredicted RBP12.22□□□□□ -0.45
SCFD1-217ENST00000555953 BCL2L12Q9HB09 334 aa12.22□□□□□ -0.45
SCFD1-217ENST00000555953 CFAP44Q96MT7 982 aa12.21□□□□□ -0.45
SCFD1-217ENST00000555953 HRO43593 1189 aa12.2□□□□□ -0.46
SCFD1-217ENST00000555953 KCNH8Q96L42 1107 aa12.19□□□□□ -0.46
SCFD1-217ENST00000555953 ZDHHC16Q969W1 377 aa12.17□□□□□ -0.46
SCFD1-217ENST00000555953 ADAM33Q9BZ11 813 aa12.17□□□□□ -0.46
SCFD1-217ENST00000555953 DPYSL4O14531 572 aa12.16□□□□□ -0.46
SCFD1-217ENST00000555953 PTPREP23469 700 aa12.15□□□□□ -0.46
SCFD1-217ENST00000555953 VPS9D1Q9Y2B5 631 aa12.15□□□□□ -0.46
SCFD1-217ENST00000555953 PCDHGA10Q9Y5H3 936 aa12.15□□□□□ -0.46
SCFD1-217ENST00000555953 ZBED2Q9BTP6 218 aa12.1□□□□□ -0.47
SCFD1-217ENST00000555953 SLC4A5Q9BY07 1137 aa12.1□□□□□ -0.47
SCFD1-217ENST00000555953 PHF14O94880 888 aa12.09□□□□□ -0.47
SCFD1-217ENST00000555953 TYW1BQ6NUM6 668 aa12.08□□□□□ -0.48
SCFD1-217ENST00000555953 FBXW7Q969H0 707 aa12.06□□□□□ -0.48
SCFD1-217ENST00000555953 STAC3Q96MF2 364 aa12.06□□□□□ -0.48
SCFD1-217ENST00000555953 KCTD12Q96CX2 325 aaKnown RBP12.05□□□□□ -0.48
SCFD1-217ENST00000555953 BHMG1C9JSJ3 638 aaPredicted RBP12.04□□□□□ -0.48
SCFD1-217ENST00000555953 COL9A1P20849 921 aa12.04□□□□□ -0.48
SCFD1-217ENST00000555953 HCSTQ9UBK5 93 aa12.04□□□□□ -0.48
SCFD1-217ENST00000555953 PPP1R3GB7ZBB8 358 aa12.03□□□□□ -0.48
SCFD1-217ENST00000555953 PDIA6Q15084 440 aa12.03□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 13.9 ms