RNA–Protein interactions for RNA: ENST00000555774.5

SHMT2-222, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 1 (best)

Gene SHMT2, Length 2,311 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-222ENST00000555774 SYNJ2O15056 1496 aa18.9■□□□□ 0.62
SHMT2-222ENST00000555774 RPRD2Q5VT52 1461 aaKnown RBP18.9■□□□□ 0.62
SHMT2-222ENST00000555774 ADCY10Q96PN6 1610 aa18.9■□□□□ 0.62
SHMT2-222ENST00000555774 ANKRD30BQ9BXX2 1392 aa18.89■□□□□ 0.61
SHMT2-222ENST00000555774 EIF4G2P78344 907 aaKnown RBP eCLIP18.88■□□□□ 0.61
SHMT2-222ENST00000555774 HSPA5P11021 654 aaKnown RBP18.88■□□□□ 0.61
SHMT2-222ENST00000555774 CEP170Q5SW79 1584 aa18.87■□□□□ 0.61
SHMT2-222ENST00000555774 ARID3CA6NKF2 412 aa18.86■□□□□ 0.61
SHMT2-222ENST00000555774 ADGBQ8N7X0 1667 aa18.85■□□□□ 0.61
SHMT2-222ENST00000555774 CAMSAP2Q08AD1 1489 aa18.85■□□□□ 0.61
SHMT2-222ENST00000555774 TEX14Q8IWB6 1497 aa18.85■□□□□ 0.61
SHMT2-222ENST00000555774 CARMIL2Q6F5E8 1435 aa18.85■□□□□ 0.61
SHMT2-222ENST00000555774 WASHC2AQ641Q2 1341 aa18.84■□□□□ 0.61
SHMT2-222ENST00000555774 ADGRL2O95490 1459 aa18.84■□□□□ 0.61
SHMT2-222ENST00000555774 ERCC6Q03468 1493 aa18.84■□□□□ 0.61
SHMT2-222ENST00000555774 L3MBTL2Q969R5 705 aa18.84■□□□□ 0.61
SHMT2-222ENST00000555774 NUP160Q12769 1436 aa18.84■□□□□ 0.61
SHMT2-222ENST00000555774 CNTLNQ9NXG0 1405 aa18.83■□□□□ 0.6
SHMT2-222ENST00000555774 PRG4Q92954 1404 aaPredicted RBP18.82■□□□□ 0.6
SHMT2-222ENST00000555774 GPATCH8Q9UKJ3 1502 aaKnown RBP18.82■□□□□ 0.6
SHMT2-222ENST00000555774 NEFLP07196 543 aa18.82■□□□□ 0.6
SHMT2-222ENST00000555774 NCOA1Q15788 1441 aa18.81■□□□□ 0.6
SHMT2-222ENST00000555774 CHMP7Q8WUX9 453 aaPredicted RBP18.8■□□□□ 0.6
SHMT2-222ENST00000555774 CROCC2H7BZ55 1655 aa18.8■□□□□ 0.6
SHMT2-222ENST00000555774 ZNF644Q9H582 1327 aaPredicted RBP18.8■□□□□ 0.6
SHMT2-222ENST00000555774 PLB1Q6P1J6 1458 aa18.79■□□□□ 0.6
SHMT2-222ENST00000555774 FKBP8Q14318 412 aa18.79■□□□□ 0.6
SHMT2-222ENST00000555774 PZPP20742 1482 aa18.79■□□□□ 0.6
SHMT2-222ENST00000555774 CFDP1Q9UEE9 299 aaPredicted RBP18.78■□□□□ 0.6
SHMT2-222ENST00000555774 SLC4A1APQ9BWU0 796 aaKnown RBP18.78■□□□□ 0.6
SHMT2-222ENST00000555774 TSHZ2Q9NRE2 1034 aa18.77■□□□□ 0.59
SHMT2-222ENST00000555774 CCDC7Q96M83 1385 aa18.76■□□□□ 0.59
SHMT2-222ENST00000555774 KIF14Q15058 1648 aa18.76■□□□□ 0.59
SHMT2-222ENST00000555774 FOXD1Q16676 465 aa18.75■□□□□ 0.59
SHMT2-222ENST00000555774 ABCA8O94911 1581 aa18.75■□□□□ 0.59
SHMT2-222ENST00000555774 SHANK2Q9UPX8 1470 aa18.74■□□□□ 0.59
SHMT2-222ENST00000555774 SPATA31E1Q6ZUB1 1445 aa18.74■□□□□ 0.59
SHMT2-222ENST00000555774 ANKRD30AQ9BXX3 1397 aa18.74■□□□□ 0.59
SHMT2-222ENST00000555774 POLR1AO95602 1720 aaPredicted RBP18.73■□□□□ 0.59
SHMT2-222ENST00000555774 KIAA1107Q9UPP5 1409 aa18.73■□□□□ 0.59
SHMT2-222ENST00000555774 MBD5Q9P267 1494 aa18.72■□□□□ 0.59
SHMT2-222ENST00000555774 JPH4Q96JJ6 628 aa18.72■□□□□ 0.59
SHMT2-222ENST00000555774 NBPF8Q3BBV2 869 aa18.71■□□□□ 0.59
SHMT2-222ENST00000555774 ABCC10Q5T3U5 1492 aa18.7■□□□□ 0.58
SHMT2-222ENST00000555774 HNRNPUQ00839 825 aaKnown RBP eCLIP18.67■□□□□ 0.58
SHMT2-222ENST00000555774 CDC42BPAQ5VT25 1732 aa18.67■□□□□ 0.58
SHMT2-222ENST00000555774 ANKRD50Q9ULJ7 1429 aa18.66■□□□□ 0.58
SHMT2-222ENST00000555774 PLEKHD1A6NEE1 506 aa18.66■□□□□ 0.58
SHMT2-222ENST00000555774 BCANQ96GW7 911 aa18.66■□□□□ 0.58
SHMT2-222ENST00000555774 KDM5DQ9BY66 1539 aa18.66■□□□□ 0.58
SHMT2-222ENST00000555774 ATP10BO94823 1461 aa18.65■□□□□ 0.58
SHMT2-222ENST00000555774 C11orf95C9JLR9 678 aaPredicted RBP18.65■□□□□ 0.58
SHMT2-222ENST00000555774 PRKRIP1Q9H875 184 aaPredicted RBP18.65■□□□□ 0.58
SHMT2-222ENST00000555774 FBLN2P98095 1184 aa18.63■□□□□ 0.57
SHMT2-222ENST00000555774 KIF7Q2M1P5 1343 aa18.63■□□□□ 0.57
SHMT2-222ENST00000555774 ARHGEF5Q12774 1597 aa18.63■□□□□ 0.57
SHMT2-222ENST00000555774 C9orf84Q5VXU9 1444 aa18.63■□□□□ 0.57
SHMT2-222ENST00000555774 ZNF777Q9ULD5 760 aaPredicted RBP18.62■□□□□ 0.57
SHMT2-222ENST00000555774 UHRF1BP1Q6BDS2 1440 aa18.62■□□□□ 0.57
SHMT2-222ENST00000555774 ARID4BQ4LE39 1312 aaPredicted RBP18.61■□□□□ 0.57
SHMT2-222ENST00000555774 ARHGEF12Q9NZN5 1544 aa18.61■□□□□ 0.57
SHMT2-222ENST00000555774 PKD2Q13563 968 aa18.6■□□□□ 0.57
SHMT2-222ENST00000555774 ERICH6BQ5W0A0 696 aa18.6■□□□□ 0.57
SHMT2-222ENST00000555774 PTPRGP23470 1445 aa18.58■□□□□ 0.56
SHMT2-222ENST00000555774 RALGAPBQ86X10 1494 aa18.57■□□□□ 0.56
SHMT2-222ENST00000555774 KDM5CP41229 1560 aa18.56■□□□□ 0.56
SHMT2-222ENST00000555774 USP47Q96K76 1375 aa18.56■□□□□ 0.56
SHMT2-222ENST00000555774 TSPY4P0CV99 314 aa18.55■□□□□ 0.56
SHMT2-222ENST00000555774 TSPY10P0CW01 314 aa18.55■□□□□ 0.56
SHMT2-222ENST00000555774 NUP155O75694 1391 aa18.55■□□□□ 0.56
SHMT2-222ENST00000555774 ZBED9Q6R2W3 1325 aa18.54■□□□□ 0.56
SHMT2-222ENST00000555774 MRS2Q9HD23 443 aa18.54■□□□□ 0.56
SHMT2-222ENST00000555774 ROCK2O75116 1388 aaKnown RBP18.53■□□□□ 0.56
SHMT2-222ENST00000555774 CCDC141Q6ZP82 1450 aa18.53■□□□□ 0.56
SHMT2-222ENST00000555774 CCDC184Q52MB2 194 aa18.52■□□□□ 0.56
SHMT2-222ENST00000555774 RSPH4AQ5TD94 716 aa18.52■□□□□ 0.56
SHMT2-222ENST00000555774 PREX2Q70Z35 1606 aa18.52■□□□□ 0.56
SHMT2-222ENST00000555774 KIF15Q9NS87 1388 aa18.52■□□□□ 0.56
SHMT2-222ENST00000555774 DHX29Q7Z478 1369 aaKnown RBP18.51■□□□□ 0.55
SHMT2-222ENST00000555774 BCORL1Q5H9F3 1711 aa18.5■□□□□ 0.55
SHMT2-222ENST00000555774 SAMD9LQ8IVG5 1584 aa18.49■□□□□ 0.55
SHMT2-222ENST00000555774 MAST1Q9Y2H9 1570 aa18.48■□□□□ 0.55
SHMT2-222ENST00000555774 FAM9BQ8IZU0 186 aa18.46■□□□□ 0.55
SHMT2-222ENST00000555774 CDC42BPBQ9Y5S2 1711 aa18.45■□□□□ 0.54
SHMT2-222ENST00000555774 SHROOM2Q13796 1616 aa18.45■□□□□ 0.54
SHMT2-222ENST00000555774 FAM135AQ9P2D6 1515 aa18.44■□□□□ 0.54
SHMT2-222ENST00000555774 HNRNPMP52272 730 aaKnown RBP eCLIP18.43■□□□□ 0.54
SHMT2-222ENST00000555774 ZNF326Q5BKZ1 582 aaKnown RBP18.43■□□□□ 0.54
SHMT2-222ENST00000555774 UNC13BO14795 1591 aa18.42■□□□□ 0.54
SHMT2-222ENST00000555774 RBM19Q9Y4C8 960 aaKnown RBP18.42■□□□□ 0.54
SHMT2-222ENST00000555774 PLEKHH2Q8IVE3 1493 aa18.42■□□□□ 0.54
SHMT2-222ENST00000555774 KTN1Q86UP2 1357 aaKnown RBP18.41■□□□□ 0.54
SHMT2-222ENST00000555774 CARD11Q9BXL7 1154 aa18.41■□□□□ 0.54
SHMT2-222ENST00000555774 PPP4R2Q9NY27 417 aa18.41■□□□□ 0.54
SHMT2-222ENST00000555774 PLXNC1O60486 1568 aa18.39■□□□□ 0.53
SHMT2-222ENST00000555774 SMG6Q86US8 1419 aaKnown RBP18.39■□□□□ 0.53
SHMT2-222ENST00000555774 ANP32EQ9BTT0 268 aa18.38■□□□□ 0.53
SHMT2-222ENST00000555774 CHD1O14646 1710 aa18.38■□□□□ 0.53
SHMT2-222ENST00000555774 SYCP2Q9BX26 1530 aa18.38■□□□□ 0.53
SHMT2-222ENST00000555774 ABCC2Q92887 1545 aa18.37■□□□□ 0.53
Retrieved 100 of 20,778 RNA–protein pairs in 14.1 ms