RNA–Protein interactions for RNA: ENST00000555402.1

VRK1-205, Transcript of vaccinia related kinase 1, humanhuman

TSL 3

Gene VRK1, Length 415 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK1-205ENST00000555402 VARS2Q5ST30 1063 aaKnown RBP15.97■□□□□ 0.15
VRK1-205ENST00000555402 GPR153Q6NV75 609 aa15.93■□□□□ 0.14
VRK1-205ENST00000555402 NLRP6P59044 892 aa15.88■□□□□ 0.13
VRK1-205ENST00000555402 ZNF687Q8N1G0 1237 aa15.87■□□□□ 0.13
VRK1-205ENST00000555402 FBXO22Q8NEZ5 403 aa15.85■□□□□ 0.13
VRK1-205ENST00000555402 BCL11BQ9C0K0 894 aaPredicted RBP15.85■□□□□ 0.13
VRK1-205ENST00000555402 TAOK2Q9UL54 1235 aa15.85■□□□□ 0.13
VRK1-205ENST00000555402 ARSIQ5FYB1 569 aa15.83■□□□□ 0.12
VRK1-205ENST00000555402 RNF166Q96A37 237 aaPredicted RBP15.81■□□□□ 0.12
VRK1-205ENST00000555402 STK24Q9Y6E0 443 aa15.81■□□□□ 0.12
VRK1-205ENST00000555402 MYT1LQ9UL68 1186 aa15.77■□□□□ 0.12
VRK1-205ENST00000555402 MFRPQ9BY79 579 aa15.76■□□□□ 0.11
VRK1-205ENST00000555402 KHSRPQ92945 711 aaKnown RBP eCLIP15.75■□□□□ 0.11
VRK1-205ENST00000555402 ZNF316A6NFI3 1004 aaPredicted RBP15.72■□□□□ 0.11
VRK1-205ENST00000555402 STK25O00506 426 aa15.72■□□□□ 0.11
VRK1-205ENST00000555402 KIF3CO14782 793 aa15.7■□□□□ 0.1
VRK1-205ENST00000555402 ECM2O94769 699 aaPredicted RBP15.68■□□□□ 0.1
VRK1-205ENST00000555402 C2orf72A6NCS6 295 aa15.67■□□□□ 0.1
VRK1-205ENST00000555402 PTGER2P43116 358 aa15.66■□□□□ 0.1
VRK1-205ENST00000555402 ANKRD13DQ6ZTN6 518 aa15.66■□□□□ 0.1
VRK1-205ENST00000555402 NUDT7P0C024 238 aa15.6■□□□□ 0.09
VRK1-205ENST00000555402 LSM11P83369 360 aaKnown RBP eCLIP15.59■□□□□ 0.09
VRK1-205ENST00000555402 RGL2O15211 777 aa15.57■□□□□ 0.08
VRK1-205ENST00000555402 SLC34A2O95436 690 aa15.56■□□□□ 0.08
VRK1-205ENST00000555402 PKD2Q13563 968 aa15.56■□□□□ 0.08
VRK1-205ENST00000555402 PCDHGA4Q9Y5G9 962 aa15.55■□□□□ 0.08
VRK1-205ENST00000555402 TMC2Q8TDI7 906 aa15.54■□□□□ 0.08
VRK1-205ENST00000555402 LHX6Q9UPM6 363 aa15.54■□□□□ 0.08
VRK1-205ENST00000555402 PBX2P40425 430 aa15.51■□□□□ 0.07
VRK1-205ENST00000555402 POTEEQ6S8J3 1075 aa15.49■□□□□ 0.07
VRK1-205ENST00000555402 PPP1R37O75864 691 aa15.48■□□□□ 0.07
VRK1-205ENST00000555402 AXIN2Q9Y2T1 843 aa15.47■□□□□ 0.07
VRK1-205ENST00000555402 KDM4FA0A1W2PPD8 638 aa15.35■□□□□ 0.05
VRK1-205ENST00000555402 PSDA5PKW4 1024 aaPredicted RBP15.35■□□□□ 0.05
VRK1-205ENST00000555402 ARHGAP33O14559 1287 aa15.35■□□□□ 0.05
VRK1-205ENST00000555402 PTCD2Q8WV60 388 aaKnown RBP15.35■□□□□ 0.05
VRK1-205ENST00000555402 ADGRD1Q6QNK2 874 aa15.32■□□□□ 0.04
VRK1-205ENST00000555402 FOXK1P85037 733 aa15.31■□□□□ 0.04
VRK1-205ENST00000555402 PLPP6Q8IY26 295 aa15.3■□□□□ 0.04
VRK1-205ENST00000555402 GPHNQ9NQX3 736 aaPredicted RBP15.28■□□□□ 0.04
VRK1-205ENST00000555402 HCSTQ9UBK5 93 aa15.28■□□□□ 0.04
VRK1-205ENST00000555402 HS6ST3Q8IZP7 471 aa15.24■□□□□ 0.03
VRK1-205ENST00000555402 PLA2G2EQ9NZK7 142 aa15.24■□□□□ 0.03
VRK1-205ENST00000555402 TK2O00142 265 aa15.23■□□□□ 0.03
VRK1-205ENST00000555402 PSEN2P49810 448 aa15.23■□□□□ 0.03
VRK1-205ENST00000555402 DSG2Q14126 1118 aa15.23■□□□□ 0.03
VRK1-205ENST00000555402 DMRTA1Q5VZB9 504 aa15.23■□□□□ 0.03
VRK1-205ENST00000555402 TBC1D12O60347 775 aa15.22■□□□□ 0.03
VRK1-205ENST00000555402 HRO43593 1189 aa15.2■□□□□ 0.02
VRK1-205ENST00000555402 PPP4R3BQ5MIZ7 849 aa15.2■□□□□ 0.02
VRK1-205ENST00000555402 CHGAP10645 457 aaKnown RBP15.12■□□□□ 0.01
VRK1-205ENST00000555402 STAC3Q96MF2 364 aa15.1■□□□□ 0.01
VRK1-205ENST00000555402 OXER1Q8TDS5 423 aa15.08■□□□□ 0
VRK1-205ENST00000555402 KCTD12Q96CX2 325 aaKnown RBP15.08■□□□□ 0
VRK1-205ENST00000555402 KCNK17Q96T54 332 aa15.08■□□□□ 0
VRK1-205ENST00000555402 KCNH8Q96L42 1107 aa15.06■□□□□ 0
VRK1-205ENST00000555402 NKX1-1Q15270 411 aaPredicted RBP15.05■□□□□ -0
VRK1-205ENST00000555402 UPF1Q92900 1129 aaKnown RBP eCLIP15.04■□□□□ -0
VRK1-205ENST00000555402 DNAJC5Q9H3Z4 198 aa15.04■□□□□ -0
VRK1-205ENST00000555402 CRISPLD2Q9H0B8 497 aa15.02■□□□□ -0
VRK1-205ENST00000555402 VPS9D1Q9Y2B5 631 aa15.02■□□□□ -0
VRK1-205ENST00000555402 ZNF454Q8N9F8 522 aa15□□□□□ -0.01
VRK1-205ENST00000555402 RYDENQ9NUL5 291 aaKnown RBP15□□□□□ -0.01
VRK1-205ENST00000555402 PPP1R15BQ5SWA1 713 aa14.98□□□□□ -0.01
VRK1-205ENST00000555402 BCL2L12Q9HB09 334 aa14.96□□□□□ -0.01
VRK1-205ENST00000555402 SLC4A5Q9BY07 1137 aa14.95□□□□□ -0.02
VRK1-205ENST00000555402 FOSBP53539 338 aa14.93□□□□□ -0.02
VRK1-205ENST00000555402 PTPN5P54829 565 aa14.93□□□□□ -0.02
VRK1-205ENST00000555402 PDE4AP27815 886 aa14.92□□□□□ -0.02
VRK1-205ENST00000555402 NCKAP5LQ9HCH0 1330 aa14.92□□□□□ -0.02
VRK1-205ENST00000555402 ANO8Q9HCE9 1232 aaPredicted RBP14.91□□□□□ -0.02
VRK1-205ENST00000555402 BHMG1C9JSJ3 638 aaPredicted RBP14.9□□□□□ -0.02
VRK1-205ENST00000555402 PTPREP23469 700 aa14.9□□□□□ -0.02
VRK1-205ENST00000555402 EVI5O60447 810 aa14.86□□□□□ -0.03
VRK1-205ENST00000555402 ZBED2Q9BTP6 218 aa14.86□□□□□ -0.03
VRK1-205ENST00000555402 JPH4Q96JJ6 628 aa14.85□□□□□ -0.03
VRK1-205ENST00000555402 THSD4Q6ZMP0 1018 aa14.84□□□□□ -0.03
VRK1-205ENST00000555402 ZDHHC16Q969W1 377 aa14.83□□□□□ -0.04
VRK1-205ENST00000555402 GOLGA8CPA6NN73 597 aa14.82□□□□□ -0.04
VRK1-205ENST00000555402 MRPL50Q8N5N7 158 aaKnown RBP14.81□□□□□ -0.04
VRK1-205ENST00000555402 LARP6Q9BRS8 491 aaKnown RBP14.81□□□□□ -0.04
VRK1-205ENST00000555402 ADAM33Q9BZ11 813 aa14.81□□□□□ -0.04
VRK1-205ENST00000555402 GTPBP6O43824 516 aaPredicted RBP14.8□□□□□ -0.04
VRK1-205ENST00000555402 WNT2BQ93097 391 aa14.8□□□□□ -0.04
VRK1-205ENST00000555402 IFFO2Q5TF58 517 aa14.79□□□□□ -0.04
VRK1-205ENST00000555402 DDX27Q96GQ7 796 aaKnown RBP14.79□□□□□ -0.04
VRK1-205ENST00000555402 MAP3K9P80192 1104 aa14.78□□□□□ -0.04
VRK1-205ENST00000555402 NBPF3Q9H094 633 aa14.74□□□□□ -0.05
VRK1-205ENST00000555402 RGS20O76081 388 aa14.73□□□□□ -0.05
VRK1-205ENST00000555402 MFSD10Q14728 455 aa14.73□□□□□ -0.05
VRK1-205ENST00000555402 EMILIN3Q9NT22 766 aa14.7□□□□□ -0.06
VRK1-205ENST00000555402 PCDHGA10Q9Y5H3 936 aa14.69□□□□□ -0.06
VRK1-205ENST00000555402 A0A0G2JS52 829 aa14.67□□□□□ -0.06
VRK1-205ENST00000555402 PPP1R3GB7ZBB8 358 aa14.67□□□□□ -0.06
VRK1-205ENST00000555402 RABGEF1Q9UJ41 708 aa14.65□□□□□ -0.06
VRK1-205ENST00000555402 COL9A1P20849 921 aa14.64□□□□□ -0.07
VRK1-205ENST00000555402 PROX2Q3B8N5 592 aa14.64□□□□□ -0.07
VRK1-205ENST00000555402 PHF14O94880 888 aa14.6□□□□□ -0.07
VRK1-205ENST00000555402 TYW1BQ6NUM6 668 aa14.6□□□□□ -0.07
VRK1-205ENST00000555402 ANKK1Q8NFD2 765 aa14.6□□□□□ -0.07
Retrieved 100 of 20,778 RNA–protein pairs in 73.4 ms