RNA–Protein interactions for RNA: ENST00000555259.5

SCFD1-215, Transcript of sec1 family domain containing 1, humanhuman

TSL 1 (best)

Gene SCFD1, Length 1,553 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-215ENST00000555259 HECW1Q76N89 1606 aa16.48■□□□□ 0.23
SCFD1-215ENST00000555259 PREX1Q8TCU6 1659 aa16.47■□□□□ 0.23
SCFD1-215ENST00000555259 ARHGEF12Q9NZN5 1544 aa16.47■□□□□ 0.23
SCFD1-215ENST00000555259 DMRT2Q9Y5R5 561 aa16.45■□□□□ 0.22
SCFD1-215ENST00000555259 SCAPERQ9BY12 1400 aa16.43■□□□□ 0.22
SCFD1-215ENST00000555259 RANGAP1P46060 587 aaPredicted RBP16.43■□□□□ 0.22
SCFD1-215ENST00000555259 CEBPAP49715 358 aaPredicted RBP16.43■□□□□ 0.22
SCFD1-215ENST00000555259 STRCQ7RTU9 1775 aa16.43■□□□□ 0.22
SCFD1-215ENST00000555259 ATP10AO60312 1499 aa16.42■□□□□ 0.22
SCFD1-215ENST00000555259 SPATA31D1Q6ZQQ2 1576 aa16.42■□□□□ 0.22
SCFD1-215ENST00000555259 C9orf84Q5VXU9 1444 aa16.42■□□□□ 0.22
SCFD1-215ENST00000555259 CSRNP3Q8WYN3 585 aa16.42■□□□□ 0.22
SCFD1-215ENST00000555259 PLCH2O75038 1416 aa16.4■□□□□ 0.22
SCFD1-215ENST00000555259 UHRF1BP1Q6BDS2 1440 aa16.4■□□□□ 0.22
SCFD1-215ENST00000555259 CDK13Q14004 1512 aaKnown RBP16.37■□□□□ 0.21
SCFD1-215ENST00000555259 PTPRTO14522 1441 aa16.35■□□□□ 0.21
SCFD1-215ENST00000555259 SETD1BQ9UPS6 1966 aaKnown RBP16.35■□□□□ 0.21
SCFD1-215ENST00000555259 EFCAB2Q5VUJ9 269 aa16.34■□□□□ 0.21
SCFD1-215ENST00000555259 ZNF518AQ6AHZ1 1483 aa16.32■□□□□ 0.2
SCFD1-215ENST00000555259 LTBP4Q8N2S1 1624 aa16.32■□□□□ 0.2
SCFD1-215ENST00000555259 MYO5CQ9NQX4 1742 aa16.3■□□□□ 0.2
SCFD1-215ENST00000555259 IQSEC2Q5JU85 1478 aa16.3■□□□□ 0.2
SCFD1-215ENST00000555259 KDM5CP41229 1560 aa16.29■□□□□ 0.2
SCFD1-215ENST00000555259 AFAP1Q8N556 730 aa16.29■□□□□ 0.2
SCFD1-215ENST00000555259 C3P01024 1663 aa16.27■□□□□ 0.2
SCFD1-215ENST00000555259 REREQ9P2R6 1566 aa16.27■□□□□ 0.2
SCFD1-215ENST00000555259 DIP2CQ9Y2E4 1556 aa16.27■□□□□ 0.2
SCFD1-215ENST00000555259 MYT1LQ9UL68 1186 aa16.26■□□□□ 0.19
SCFD1-215ENST00000555259 EEA1Q15075 1411 aa16.25■□□□□ 0.19
SCFD1-215ENST00000555259 NCOA1Q15788 1441 aa16.25■□□□□ 0.19
SCFD1-215ENST00000555259 TRAPPC8Q9Y2L5 1435 aa16.25■□□□□ 0.19
SCFD1-215ENST00000555259 KIF14Q15058 1648 aa16.25■□□□□ 0.19
SCFD1-215ENST00000555259 ARHGAP5Q13017 1502 aa16.24■□□□□ 0.19
SCFD1-215ENST00000555259 ABCA6Q8N139 1617 aa16.23■□□□□ 0.19
SCFD1-215ENST00000555259 ESF1Q9H501 851 aaKnown RBP16.22■□□□□ 0.19
SCFD1-215ENST00000555259 ATP1B4Q9UN42 357 aaPredicted RBP16.22■□□□□ 0.19
SCFD1-215ENST00000555259 CDK11AQ9UQ88 783 aaPredicted RBP16.22■□□□□ 0.19
SCFD1-215ENST00000555259 MLH3Q9UHC1 1453 aa16.22■□□□□ 0.19
SCFD1-215ENST00000555259 AGLP35573 1532 aa16.22■□□□□ 0.19
SCFD1-215ENST00000555259 TROQ12816 1431 aaPredicted RBP16.2■□□□□ 0.18
SCFD1-215ENST00000555259 FMN1Q68DA7 1419 aa16.2■□□□□ 0.18
SCFD1-215ENST00000555259 CNTLNQ9NXG0 1405 aa16.18■□□□□ 0.18
SCFD1-215ENST00000555259 CAMSAP1Q5T5Y3 1602 aa16.18■□□□□ 0.18
SCFD1-215ENST00000555259 UBAP1LF5GYI3 381 aa16.17■□□□□ 0.18
SCFD1-215ENST00000555259 CLIP1P30622 1438 aa16.16■□□□□ 0.18
SCFD1-215ENST00000555259 SENP3Q9H4L4 574 aaPredicted RBP16.16■□□□□ 0.18
SCFD1-215ENST00000555259 ZNF335Q9H4Z2 1342 aaPredicted RBP16.16■□□□□ 0.18
SCFD1-215ENST00000555259 NPATQ14207 1427 aa16.15■□□□□ 0.18
SCFD1-215ENST00000555259 CDC42BPBQ9Y5S2 1711 aa16.14■□□□□ 0.17
SCFD1-215ENST00000555259 ABCC1P33527 1531 aa16.14■□□□□ 0.17
SCFD1-215ENST00000555259 NCKAP5LQ9HCH0 1330 aa16.13■□□□□ 0.17
SCFD1-215ENST00000555259 ARHGAP35Q9NRY4 1499 aa16.12■□□□□ 0.17
SCFD1-215ENST00000555259 KIDINS220Q9ULH0 1771 aa16.12■□□□□ 0.17
SCFD1-215ENST00000555259 ZMYM3Q14202 1370 aa16.11■□□□□ 0.17
SCFD1-215ENST00000555259 PREX2Q70Z35 1606 aa16.11■□□□□ 0.17
SCFD1-215ENST00000555259 MROH2AA6NES4 1674 aa16.11■□□□□ 0.17
SCFD1-215ENST00000555259 ITSN2Q9NZM3 1697 aa16.11■□□□□ 0.17
SCFD1-215ENST00000555259 PLA2R1Q13018 1463 aa16.09■□□□□ 0.17
SCFD1-215ENST00000555259 PKD2Q13563 968 aa16.09■□□□□ 0.17
SCFD1-215ENST00000555259 LRRIQ1Q96JM4 1722 aa16.08■□□□□ 0.17
SCFD1-215ENST00000555259 TCOF1Q13428 1488 aaKnown RBP16.07■□□□□ 0.16
SCFD1-215ENST00000555259 UBTFP17480 764 aaKnown RBP16.07■□□□□ 0.16
SCFD1-215ENST00000555259 ZNF142P52746 1687 aaPredicted RBP16.06■□□□□ 0.16
SCFD1-215ENST00000555259 MYO3AQ8NEV4 1616 aa16.06■□□□□ 0.16
SCFD1-215ENST00000555259 EHMT2Q96KQ7 1210 aa16.05■□□□□ 0.16
SCFD1-215ENST00000555259 SAMD9LQ8IVG5 1584 aa16.05■□□□□ 0.16
SCFD1-215ENST00000555259 MED1Q15648 1581 aaPredicted RBP16.04■□□□□ 0.16
SCFD1-215ENST00000555259 CEP170BQ9Y4F5 1589 aaPredicted RBP16.04■□□□□ 0.16
SCFD1-215ENST00000555259 HSPA1LP34931 641 aa16.03■□□□□ 0.16
SCFD1-215ENST00000555259 PPP6R1Q9UPN7 881 aa16.03■□□□□ 0.16
SCFD1-215ENST00000555259 PTPRKQ15262 1439 aa16.02■□□□□ 0.16
SCFD1-215ENST00000555259 CLTCQ00610 1675 aaKnown RBP16.02■□□□□ 0.16
SCFD1-215ENST00000555259 CDC42BPAQ5VT25 1732 aa16.02■□□□□ 0.15
SCFD1-215ENST00000555259 SUPT6HQ7KZ85 1726 aaKnown RBP16.02■□□□□ 0.15
SCFD1-215ENST00000555259 SPAG9O60271 1321 aaKnown RBP16.01■□□□□ 0.15
SCFD1-215ENST00000555259 SCAF1Q9H7N4 1312 aaKnown RBP16■□□□□ 0.15
SCFD1-215ENST00000555259 CCDC18Q5T9S5 1454 aa16■□□□□ 0.15
SCFD1-215ENST00000555259 SYCP2Q9BX26 1530 aa15.99■□□□□ 0.15
SCFD1-215ENST00000555259 PLXNC1O60486 1568 aa15.99■□□□□ 0.15
SCFD1-215ENST00000555259 PIP4K2BP78356 416 aa15.99■□□□□ 0.15
SCFD1-215ENST00000555259 ZNF777Q9ULD5 760 aaPredicted RBP15.99■□□□□ 0.15
SCFD1-215ENST00000555259 ATP7AQ04656 1500 aa15.97■□□□□ 0.15
SCFD1-215ENST00000555259 TOM1O60784 492 aa15.97■□□□□ 0.15
SCFD1-215ENST00000555259 A2MP01023 1474 aa15.97■□□□□ 0.15
SCFD1-215ENST00000555259 HNRNPMP52272 730 aaKnown RBP eCLIP15.96■□□□□ 0.151e-6■■■□□ 16.6
SCFD1-215ENST00000555259 GGT6Q6P531 493 aa15.96■□□□□ 0.15
SCFD1-215ENST00000555259 CASKIN1Q8WXD9 1431 aa15.96■□□□□ 0.15
SCFD1-215ENST00000555259 CPS1P31327 1500 aa15.95■□□□□ 0.14
SCFD1-215ENST00000555259 A2ML1A8K2U0 1454 aa15.95■□□□□ 0.14
SCFD1-215ENST00000555259 INO80Q9ULG1 1556 aaPredicted RBP15.94■□□□□ 0.14
SCFD1-215ENST00000555259 DNMT1P26358 1616 aaKnown RBP15.94■□□□□ 0.14
SCFD1-215ENST00000555259 GPATCH8Q9UKJ3 1502 aaKnown RBP15.94■□□□□ 0.14
SCFD1-215ENST00000555259 KIAA1107Q9UPP5 1409 aa15.93■□□□□ 0.14
SCFD1-215ENST00000555259 SHANK2Q9UPX8 1470 aa15.93■□□□□ 0.14
SCFD1-215ENST00000555259 PHF23Q9BUL5 403 aaPredicted RBP15.92■□□□□ 0.14
SCFD1-215ENST00000555259 NEURL4Q96JN8 1562 aa15.92■□□□□ 0.14
SCFD1-215ENST00000555259 PLEKHH2Q8IVE3 1493 aa15.91■□□□□ 0.14
SCFD1-215ENST00000555259 POLR1AO95602 1720 aaPredicted RBP15.9■□□□□ 0.14
SCFD1-215ENST00000555259 CFDP1Q9UEE9 299 aaPredicted RBP15.88■□□□□ 0.13
SCFD1-215ENST00000555259 ALKQ9UM73 1620 aa15.87■□□□□ 0.13
Retrieved 100 of 20,778 RNA–protein pairs in 27.8 ms