RNA–Protein interactions for RNA: ENST00000554976.5

TDP1-210, Transcript of tyrosyl-DNA phosphodiesterase 1, humanhuman

TSL 2

Gene TDP1, Length 3,040 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TDP1-210ENST00000554976 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP13.37□□□□□ -0.27
TDP1-210ENST00000554976 MYO5CQ9NQX4 1742 aa13.36□□□□□ -0.27
TDP1-210ENST00000554976 DAPK1P53355 1430 aa13.36□□□□□ -0.27
TDP1-210ENST00000554976 SAMD9LQ8IVG5 1584 aa13.35□□□□□ -0.27
TDP1-210ENST00000554976 FAM50AQ14320 339 aaKnown RBP13.35□□□□□ -0.27
TDP1-210ENST00000554976 ARHGEF5Q12774 1597 aa13.35□□□□□ -0.27
TDP1-210ENST00000554976 ABCC5O15440 1437 aa13.35□□□□□ -0.27
TDP1-210ENST00000554976 ARID3CA6NKF2 412 aa13.34□□□□□ -0.27
TDP1-210ENST00000554976 ADGRL2O95490 1459 aa13.33□□□□□ -0.28
TDP1-210ENST00000554976 CDK11AQ9UQ88 783 aaPredicted RBP13.33□□□□□ -0.28
TDP1-210ENST00000554976 ROCK1Q13464 1354 aa13.32□□□□□ -0.28
TDP1-210ENST00000554976 DENND4BO75064 1496 aaPredicted RBP13.31□□□□□ -0.28
TDP1-210ENST00000554976 SHANK2Q9UPX8 1470 aa13.31□□□□□ -0.28
TDP1-210ENST00000554976 ITGAEP38570 1179 aa13.29□□□□□ -0.28
TDP1-210ENST00000554976 MAST1Q9Y2H9 1570 aa13.29□□□□□ -0.28
TDP1-210ENST00000554976 MBD5Q9P267 1494 aa13.28□□□□□ -0.28
TDP1-210ENST00000554976 ARAP3Q8WWN8 1544 aa13.27□□□□□ -0.28
TDP1-210ENST00000554976 ABCA9Q8IUA7 1624 aa13.27□□□□□ -0.28
TDP1-210ENST00000554976 ZNF644Q9H582 1327 aaPredicted RBP13.27□□□□□ -0.29
TDP1-210ENST00000554976 PLEKHD1A6NEE1 506 aa13.26□□□□□ -0.29
TDP1-210ENST00000554976 MYT1Q01538 1121 aa13.25□□□□□ -0.29
TDP1-210ENST00000554976 PLXNC1O60486 1568 aa13.23□□□□□ -0.29
TDP1-210ENST00000554976 WDR7Q9Y4E6 1490 aa13.22□□□□□ -0.29
TDP1-210ENST00000554976 ABCC1P33527 1531 aa13.22□□□□□ -0.29
TDP1-210ENST00000554976 NCOA1Q15788 1441 aa13.22□□□□□ -0.29
TDP1-210ENST00000554976 OSCARQ8IYS5 282 aa13.21□□□□□ -0.29
TDP1-210ENST00000554976 SYCP2Q9BX26 1530 aa13.21□□□□□ -0.29
TDP1-210ENST00000554976 KDM5DQ9BY66 1539 aa13.2□□□□□ -0.3
TDP1-210ENST00000554976 ARHGEF12Q9NZN5 1544 aa13.2□□□□□ -0.3
TDP1-210ENST00000554976 PLCH2O75038 1416 aa13.2□□□□□ -0.3
TDP1-210ENST00000554976 CFDP1Q9UEE9 299 aaPredicted RBP13.19□□□□□ -0.3
TDP1-210ENST00000554976 ARHGAP5Q13017 1502 aa13.19□□□□□ -0.3
TDP1-210ENST00000554976 CCDC141Q6ZP82 1450 aa13.18□□□□□ -0.3
TDP1-210ENST00000554976 KIAA1107Q9UPP5 1409 aa13.18□□□□□ -0.3
TDP1-210ENST00000554976 RIMBP3CA6NJZ7 1639 aa13.18□□□□□ -0.3
TDP1-210ENST00000554976 RIMBP3BA6NNM3 1639 aa13.18□□□□□ -0.3
TDP1-210ENST00000554976 RIMBP3Q9UFD9 1639 aa13.18□□□□□ -0.3
TDP1-210ENST00000554976 C9orf84Q5VXU9 1444 aa13.17□□□□□ -0.3
TDP1-210ENST00000554976 UNC13BO14795 1591 aa13.16□□□□□ -0.3
TDP1-210ENST00000554976 PZPP20742 1482 aa13.16□□□□□ -0.3
TDP1-210ENST00000554976 PLEKHH2Q8IVE3 1493 aa13.16□□□□□ -0.3
TDP1-210ENST00000554976 ASXL2Q76L83 1435 aa13.14□□□□□ -0.31
TDP1-210ENST00000554976 RRP7BPQ9NSQ0 103 aa13.14□□□□□ -0.31
TDP1-210ENST00000554976 INO80Q9ULG1 1556 aaPredicted RBP13.14□□□□□ -0.31
TDP1-210ENST00000554976 CHIC2Q9UKJ5 165 aa13.13□□□□□ -0.31
TDP1-210ENST00000554976 ZFYVE16Q7Z3T8 1539 aa13.11□□□□□ -0.31
TDP1-210ENST00000554976 MAGI2Q86UL8 1455 aa13.11□□□□□ -0.31
TDP1-210ENST00000554976 MAP3K4Q9Y6R4 1608 aa13.11□□□□□ -0.31
TDP1-210ENST00000554976 ANKRD30AQ9BXX3 1397 aa13.1□□□□□ -0.31
TDP1-210ENST00000554976 CFAP74Q9C0B2 1584 aa13.1□□□□□ -0.31
TDP1-210ENST00000554976 ACIN1Q9UKV3 1341 aaKnown RBP13.1□□□□□ -0.31
TDP1-210ENST00000554976 DEPDC5O75140 1603 aa13.09□□□□□ -0.31
TDP1-210ENST00000554976 IQGAP3Q86VI3 1631 aa13.09□□□□□ -0.31
TDP1-210ENST00000554976 AEBP2Q6ZN18 517 aaPredicted RBP13.08□□□□□ -0.32
TDP1-210ENST00000554976 ANKRD50Q9ULJ7 1429 aa13.07□□□□□ -0.32
TDP1-210ENST00000554976 GLI2P10070 1586 aa13.07□□□□□ -0.32
TDP1-210ENST00000554976 ZNF777Q9ULD5 760 aaPredicted RBP13.07□□□□□ -0.32
TDP1-210ENST00000554976 DUOX2Q9NRD8 1548 aa13.06□□□□□ -0.32
TDP1-210ENST00000554976 HNRNPMP52272 730 aaKnown RBP eCLIP13.06□□□□□ -0.32
TDP1-210ENST00000554976 TIMELESSQ9UNS1 1208 aa13.06□□□□□ -0.32
TDP1-210ENST00000554976 TRAPPC8Q9Y2L5 1435 aa13.06□□□□□ -0.32
TDP1-210ENST00000554976 RSPH4AQ5TD94 716 aa13.06□□□□□ -0.32
TDP1-210ENST00000554976 SIN3AQ96ST3 1273 aa13.06□□□□□ -0.32
TDP1-210ENST00000554976 FANCAO15360 1455 aa13.05□□□□□ -0.32
TDP1-210ENST00000554976 ANKRD30BQ9BXX2 1392 aa13.05□□□□□ -0.32
TDP1-210ENST00000554976 KDM5CP41229 1560 aa13.05□□□□□ -0.32
TDP1-210ENST00000554976 KIDINS220Q9ULH0 1771 aa13.05□□□□□ -0.32
TDP1-210ENST00000554976 RTEL1-TNFRSF6BF6WH68 1400 aa13.04□□□□□ -0.32
TDP1-210ENST00000554976 KIF15Q9NS87 1388 aa13.04□□□□□ -0.32
TDP1-210ENST00000554976 EIF2AK4Q9P2K8 1649 aaKnown RBP13.04□□□□□ -0.32
TDP1-210ENST00000554976 TEX14Q8IWB6 1497 aa13.04□□□□□ -0.32
TDP1-210ENST00000554976 BCORL1Q5H9F3 1711 aa13.03□□□□□ -0.32
TDP1-210ENST00000554976 ERBINQ96RT1 1412 aa13.03□□□□□ -0.32
TDP1-210ENST00000554976 MPHOSPH9Q99550 1183 aa13.03□□□□□ -0.32
TDP1-210ENST00000554976 RPRD2Q5VT52 1461 aaKnown RBP13.03□□□□□ -0.32
TDP1-210ENST00000554976 PPRC1Q5VV67 1664 aaKnown RBP13.03□□□□□ -0.32
TDP1-210ENST00000554976 ATP7AQ04656 1500 aa13.02□□□□□ -0.33
TDP1-210ENST00000554976 FAM135AQ9P2D6 1515 aa13.02□□□□□ -0.33
TDP1-210ENST00000554976 ZNF316A6NFI3 1004 aaPredicted RBP13.02□□□□□ -0.33
TDP1-210ENST00000554976 KCNH8Q96L42 1107 aa13.01□□□□□ -0.33
TDP1-210ENST00000554976 VWDEQ8N2E2 1590 aa13.01□□□□□ -0.33
TDP1-210ENST00000554976 MROH1Q8NDA8 1641 aa13.01□□□□□ -0.33
TDP1-210ENST00000554976 RICTORQ6R327 1708 aa13□□□□□ -0.33
TDP1-210ENST00000554976 DIP2BQ9P265 1576 aa13□□□□□ -0.33
TDP1-210ENST00000554976 EFCAB2Q5VUJ9 269 aa12.99□□□□□ -0.33
TDP1-210ENST00000554976 ADGRL1O94910 1474 aa12.99□□□□□ -0.33
TDP1-210ENST00000554976 RNF17Q9BXT8 1623 aaKnown RBP12.97□□□□□ -0.33
TDP1-210ENST00000554976 FRMPD1Q5SYB0 1578 aa12.97□□□□□ -0.33
TDP1-210ENST00000554976 KIF13AQ9H1H9 1805 aa12.97□□□□□ -0.33
TDP1-210ENST00000554976 PPP1R15AO75807 674 aaPredicted RBP12.97□□□□□ -0.33
TDP1-210ENST00000554976 E9PCH4 1651 aa12.96□□□□□ -0.33
TDP1-210ENST00000554976 PRDM15P57071 1507 aaPredicted RBP12.96□□□□□ -0.33
TDP1-210ENST00000554976 TSPY4P0CV99 314 aa12.96□□□□□ -0.33
TDP1-210ENST00000554976 TSPY10P0CW01 314 aa12.96□□□□□ -0.33
TDP1-210ENST00000554976 HECW2Q9P2P5 1572 aa12.96□□□□□ -0.33
TDP1-210ENST00000554976 NEO1Q92859 1461 aa12.96□□□□□ -0.34
TDP1-210ENST00000554976 ABCA6Q8N139 1617 aa12.95□□□□□ -0.34
TDP1-210ENST00000554976 POGZQ7Z3K3 1410 aa12.95□□□□□ -0.34
TDP1-210ENST00000554976 TRIM52Q96A61 297 aa12.94□□□□□ -0.34
TDP1-210ENST00000554976 TET3O43151 1660 aa12.94□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 149.9 ms