RNA–Protein interactions for RNA: ENST00000553779.5

ACTN1-210, Transcript of actinin alpha 1, humanhuman

TSL 4

Gene ACTN1, Length 530 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ACTN1-210ENST00000553779 CLIP1P30622 1438 aa16.27■□□□□ 0.19
ACTN1-210ENST00000553779 ARHGAP35Q9NRY4 1499 aa16.26■□□□□ 0.19
ACTN1-210ENST00000553779 PCF11O94913 1555 aaKnown RBP16.26■□□□□ 0.19
ACTN1-210ENST00000553779 ARHGAP5Q13017 1502 aa16.24■□□□□ 0.19
ACTN1-210ENST00000553779 MAGI2Q86UL8 1455 aa16.23■□□□□ 0.19
ACTN1-210ENST00000553779 SCAPERQ9BY12 1400 aa16.23■□□□□ 0.19
ACTN1-210ENST00000553779 CHIC1Q5VXU3 224 aa16.23■□□□□ 0.19
ACTN1-210ENST00000553779 MYT1LQ9UL68 1186 aa16.23■□□□□ 0.19
ACTN1-210ENST00000553779 PLCH2O75038 1416 aa16.22■□□□□ 0.19
ACTN1-210ENST00000553779 SIGLEC1Q9BZZ2 1709 aa16.22■□□□□ 0.19
ACTN1-210ENST00000553779 YEATS2Q9ULM3 1422 aa16.21■□□□□ 0.19
ACTN1-210ENST00000553779 MLECQ14165 292 aa16.21■□□□□ 0.19
ACTN1-210ENST00000553779 EFCAB2Q5VUJ9 269 aa16.2■□□□□ 0.18
ACTN1-210ENST00000553779 TROQ12816 1431 aaPredicted RBP16.19■□□□□ 0.18
ACTN1-210ENST00000553779 CDC42BPBQ9Y5S2 1711 aa16.19■□□□□ 0.18
ACTN1-210ENST00000553779 CCDC18Q5T9S5 1454 aa16.18■□□□□ 0.18
ACTN1-210ENST00000553779 ZNF518AQ6AHZ1 1483 aa16.17■□□□□ 0.18
ACTN1-210ENST00000553779 LMTK3Q96Q04 1460 aa16.17■□□□□ 0.18
ACTN1-210ENST00000553779 PREX2Q70Z35 1606 aa16.17■□□□□ 0.18
ACTN1-210ENST00000553779 C9orf84Q5VXU9 1444 aa16.17■□□□□ 0.18
ACTN1-210ENST00000553779 ATP10AO60312 1499 aa16.16■□□□□ 0.18
ACTN1-210ENST00000553779 PREX1Q8TCU6 1659 aa16.15■□□□□ 0.18
ACTN1-210ENST00000553779 ITSN2Q9NZM3 1697 aa16.14■□□□□ 0.18
ACTN1-210ENST00000553779 CDC42BPAQ5VT25 1732 aa16.14■□□□□ 0.17
ACTN1-210ENST00000553779 KDM5CP41229 1560 aa16.12■□□□□ 0.17
ACTN1-210ENST00000553779 CASKIN1Q8WXD9 1431 aa16.11■□□□□ 0.17
ACTN1-210ENST00000553779 FYCO1Q9BQS8 1478 aa16.1■□□□□ 0.17
ACTN1-210ENST00000553779 ARHGEF12Q9NZN5 1544 aa16.1■□□□□ 0.17
ACTN1-210ENST00000553779 DIP2CQ9Y2E4 1556 aa16.1■□□□□ 0.17
ACTN1-210ENST00000553779 SETD1BQ9UPS6 1966 aaKnown RBP16.1■□□□□ 0.17
ACTN1-210ENST00000553779 ABCA6Q8N139 1617 aa16.1■□□□□ 0.17
ACTN1-210ENST00000553779 HSPA2P54652 639 aa16.09■□□□□ 0.17
ACTN1-210ENST00000553779 FBXO41Q8TF61 875 aa16.09■□□□□ 0.17
ACTN1-210ENST00000553779 ABCC1P33527 1531 aa16.09■□□□□ 0.17
ACTN1-210ENST00000553779 ESF1Q9H501 851 aaKnown RBP16.07■□□□□ 0.16
ACTN1-210ENST00000553779 AFAP1Q8N556 730 aa16.06■□□□□ 0.16
ACTN1-210ENST00000553779 C3P01024 1663 aa16.04■□□□□ 0.16
ACTN1-210ENST00000553779 REREQ9P2R6 1566 aa16.04■□□□□ 0.16
ACTN1-210ENST00000553779 KIDINS220Q9ULH0 1771 aa16.03■□□□□ 0.16
ACTN1-210ENST00000553779 ZNF777Q9ULD5 760 aaPredicted RBP16.03■□□□□ 0.16
ACTN1-210ENST00000553779 SUPT6HQ7KZ85 1726 aaKnown RBP16.02■□□□□ 0.16
ACTN1-210ENST00000553779 SYCP2Q9BX26 1530 aa16.01■□□□□ 0.15
ACTN1-210ENST00000553779 MLH3Q9UHC1 1453 aa16.01■□□□□ 0.15
ACTN1-210ENST00000553779 UHRF1BP1Q6BDS2 1440 aa16.01■□□□□ 0.15
ACTN1-210ENST00000553779 TRAPPC8Q9Y2L5 1435 aa16■□□□□ 0.15
ACTN1-210ENST00000553779 SAMD9LQ8IVG5 1584 aa16■□□□□ 0.15
ACTN1-210ENST00000553779 CEBPAP49715 358 aaPredicted RBP15.99■□□□□ 0.15
ACTN1-210ENST00000553779 AGLP35573 1532 aa15.97■□□□□ 0.15
ACTN1-210ENST00000553779 MTUS2Q5JR59 1369 aa15.97■□□□□ 0.15
ACTN1-210ENST00000553779 CCNB3Q8WWL7 1395 aa15.96■□□□□ 0.15
ACTN1-210ENST00000553779 MROH2AA6NES4 1674 aa15.95■□□□□ 0.14
ACTN1-210ENST00000553779 STRCQ7RTU9 1775 aa15.95■□□□□ 0.14
ACTN1-210ENST00000553779 PLEKHH2Q8IVE3 1493 aa15.95■□□□□ 0.14
ACTN1-210ENST00000553779 SPAG9O60271 1321 aaKnown RBP15.94■□□□□ 0.14
ACTN1-210ENST00000553779 ATP7AQ04656 1500 aa15.94■□□□□ 0.14
ACTN1-210ENST00000553779 CNTLNQ9NXG0 1405 aa15.94■□□□□ 0.14
ACTN1-210ENST00000553779 CLTCQ00610 1675 aaKnown RBP15.93■□□□□ 0.14
ACTN1-210ENST00000553779 ADGBQ8N7X0 1667 aa15.93■□□□□ 0.14
ACTN1-210ENST00000553779 EHBP1L1Q8N3D4 1523 aa15.93■□□□□ 0.14
ACTN1-210ENST00000553779 CFDP1Q9UEE9 299 aaPredicted RBP15.92■□□□□ 0.14
ACTN1-210ENST00000553779 DMRT2Q9Y5R5 561 aa15.92■□□□□ 0.14
ACTN1-210ENST00000553779 GPATCH8Q9UKJ3 1502 aaKnown RBP15.92■□□□□ 0.14
ACTN1-210ENST00000553779 INO80Q9ULG1 1556 aaPredicted RBP15.92■□□□□ 0.14
ACTN1-210ENST00000553779 CERKQ8TCT0 537 aa15.91■□□□□ 0.14
ACTN1-210ENST00000553779 TIAM1Q13009 1591 aa15.89■□□□□ 0.13
ACTN1-210ENST00000553779 HNRNPMP52272 730 aaKnown RBP eCLIP15.89■□□□□ 0.13
ACTN1-210ENST00000553779 A2MP01023 1474 aa15.86■□□□□ 0.13
ACTN1-210ENST00000553779 CEP162Q5TB80 1403 aa15.85■□□□□ 0.13
ACTN1-210ENST00000553779 KIAA1107Q9UPP5 1409 aa15.85■□□□□ 0.13
ACTN1-210ENST00000553779 PLXNC1O60486 1568 aa15.85■□□□□ 0.13
ACTN1-210ENST00000553779 MYO3AQ8NEV4 1616 aa15.85■□□□□ 0.13
ACTN1-210ENST00000553779 ZNF142P52746 1687 aaPredicted RBP15.83■□□□□ 0.13
ACTN1-210ENST00000553779 CAMSAP1Q5T5Y3 1602 aa15.83■□□□□ 0.12
ACTN1-210ENST00000553779 NPATQ14207 1427 aa15.82■□□□□ 0.12
ACTN1-210ENST00000553779 GGT6Q6P531 493 aa15.81■□□□□ 0.12
ACTN1-210ENST00000553779 PTPRTO14522 1441 aa15.8■□□□□ 0.12
ACTN1-210ENST00000553779 NCOA1Q15788 1441 aa15.79■□□□□ 0.12
ACTN1-210ENST00000553779 ZMYM3Q14202 1370 aa15.79■□□□□ 0.12
ACTN1-210ENST00000553779 CEP170BQ9Y4F5 1589 aaPredicted RBP15.79■□□□□ 0.12
ACTN1-210ENST00000553779 CAMSAP2Q08AD1 1489 aa15.78■□□□□ 0.12
ACTN1-210ENST00000553779 NCOA2Q15596 1464 aa15.77■□□□□ 0.11
ACTN1-210ENST00000553779 CCDC141Q6ZP82 1450 aa15.77■□□□□ 0.11
ACTN1-210ENST00000553779 ZNF644Q9H582 1327 aaPredicted RBP15.76■□□□□ 0.11
ACTN1-210ENST00000553779 POLR1AO95602 1720 aaPredicted RBP15.76■□□□□ 0.11
ACTN1-210ENST00000553779 RTEL1-TNFRSF6BF6WH68 1400 aa15.72■□□□□ 0.11
ACTN1-210ENST00000553779 KDM5DQ9BY66 1539 aa15.72■□□□□ 0.11
ACTN1-210ENST00000553779 CFAP65Q6ZU64 1925 aaKnown RBP15.72■□□□□ 0.11
ACTN1-210ENST00000553779 MBD5Q9P267 1494 aa15.71■□□□□ 0.11
ACTN1-210ENST00000553779 PTPRKQ15262 1439 aa15.71■□□□□ 0.11
ACTN1-210ENST00000553779 NCKAP5LQ9HCH0 1330 aa15.7■□□□□ 0.1
ACTN1-210ENST00000553779 LTBP4Q8N2S1 1624 aa15.7■□□□□ 0.1
ACTN1-210ENST00000553779 PPP6R1Q9UPN7 881 aa15.7■□□□□ 0.1
ACTN1-210ENST00000553779 PLA2R1Q13018 1463 aa15.7■□□□□ 0.1
ACTN1-210ENST00000553779 ARHGEF5Q12774 1597 aa15.7■□□□□ 0.1
ACTN1-210ENST00000553779 FAM135AQ9P2D6 1515 aa15.69■□□□□ 0.1
ACTN1-210ENST00000553779 KIF3BO15066 747 aa15.69■□□□□ 0.1
ACTN1-210ENST00000553779 DHX29Q7Z478 1369 aaKnown RBP15.69■□□□□ 0.1
ACTN1-210ENST00000553779 IQSEC2Q5JU85 1478 aa15.69■□□□□ 0.1
ACTN1-210ENST00000553779 SPATA31D1Q6ZQQ2 1576 aa15.68■□□□□ 0.1
ACTN1-210ENST00000553779 A2ML1A8K2U0 1454 aa15.68■□□□□ 0.1
Retrieved 100 of 20,778 RNA–protein pairs in 828.3 ms