RNA–Protein interactions for RNA: ENST00000553128.5

VPS29-211, Transcript of VPS29, retromer complex component, humanhuman

TSL 3

Gene VPS29, Length 449 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-211ENST00000553128 MAGI2Q86UL8 1455 aa22.01■■□□□ 1.11
VPS29-211ENST00000553128 CEBPAP49715 358 aaPredicted RBP22■■□□□ 1.11
VPS29-211ENST00000553128 SCAPERQ9BY12 1400 aa21.98■■□□□ 1.11
VPS29-211ENST00000553128 ARHGEF12Q9NZN5 1544 aa21.98■■□□□ 1.11
VPS29-211ENST00000553128 CDK13Q14004 1512 aaKnown RBP21.96■■□□□ 1.11
VPS29-211ENST00000553128 SOCS7O14512 581 aa21.95■■□□□ 1.1
VPS29-211ENST00000553128 PREX1Q8TCU6 1659 aa21.94■■□□□ 1.1
VPS29-211ENST00000553128 ATP10AO60312 1499 aa21.93■■□□□ 1.1
VPS29-211ENST00000553128 PLCH2O75038 1416 aa21.93■■□□□ 1.1
VPS29-211ENST00000553128 STRCQ7RTU9 1775 aa21.93■■□□□ 1.1
VPS29-211ENST00000553128 C9orf84Q5VXU9 1444 aa21.91■■□□□ 1.1
VPS29-211ENST00000553128 DMRT2Q9Y5R5 561 aa21.84■■□□□ 1.09
VPS29-211ENST00000553128 UHRF1BP1Q6BDS2 1440 aa21.83■■□□□ 1.09
VPS29-211ENST00000553128 EFCAB2Q5VUJ9 269 aa21.82■■□□□ 1.08
VPS29-211ENST00000553128 AFAP1Q8N556 730 aa21.82■■□□□ 1.08
VPS29-211ENST00000553128 SPATA31D1Q6ZQQ2 1576 aa21.81■■□□□ 1.08
VPS29-211ENST00000553128 MYO5CQ9NQX4 1742 aa21.78■■□□□ 1.08
VPS29-211ENST00000553128 KIF14Q15058 1648 aa21.78■■□□□ 1.08
VPS29-211ENST00000553128 ZNF518AQ6AHZ1 1483 aa21.77■■□□□ 1.08
VPS29-211ENST00000553128 ATP1B4Q9UN42 357 aaPredicted RBP21.77■■□□□ 1.08
VPS29-211ENST00000553128 PTPRTO14522 1441 aa21.77■■□□□ 1.08
VPS29-211ENST00000553128 KDM5CP41229 1560 aa21.77■■□□□ 1.08
VPS29-211ENST00000553128 DIP2CQ9Y2E4 1556 aa21.77■■□□□ 1.08
VPS29-211ENST00000553128 EEA1Q15075 1411 aa21.76■■□□□ 1.07
VPS29-211ENST00000553128 LTBP4Q8N2S1 1624 aa21.76■■□□□ 1.07
VPS29-211ENST00000553128 C3P01024 1663 aa21.74■■□□□ 1.07
VPS29-211ENST00000553128 ARHGAP5Q13017 1502 aa21.72■■□□□ 1.07
VPS29-211ENST00000553128 MYT1LQ9UL68 1186 aa21.72■■□□□ 1.07
VPS29-211ENST00000553128 ABCA6Q8N139 1617 aa21.72■■□□□ 1.07
VPS29-211ENST00000553128 SETD1BQ9UPS6 1966 aaKnown RBP21.72■■□□□ 1.07
VPS29-211ENST00000553128 EHMT2Q96KQ7 1210 aa21.7■■□□□ 1.06
VPS29-211ENST00000553128 REREQ9P2R6 1566 aa21.7■■□□□ 1.06
VPS29-211ENST00000553128 TROQ12816 1431 aaPredicted RBP21.68■■□□□ 1.06
VPS29-211ENST00000553128 NCOA1Q15788 1441 aa21.67■■□□□ 1.06
VPS29-211ENST00000553128 TRAPPC8Q9Y2L5 1435 aa21.67■■□□□ 1.06
VPS29-211ENST00000553128 MLH3Q9UHC1 1453 aa21.66■■□□□ 1.06
VPS29-211ENST00000553128 FMN1Q68DA7 1419 aa21.66■■□□□ 1.06
VPS29-211ENST00000553128 CDK11AQ9UQ88 783 aaPredicted RBP21.66■■□□□ 1.06
VPS29-211ENST00000553128 ARHGAP35Q9NRY4 1499 aa21.65■■□□□ 1.06
VPS29-211ENST00000553128 AGLP35573 1532 aa21.64■■□□□ 1.05
VPS29-211ENST00000553128 IQSEC2Q5JU85 1478 aa21.63■■□□□ 1.05
VPS29-211ENST00000553128 CDC42BPBQ9Y5S2 1711 aa21.63■■□□□ 1.05
VPS29-211ENST00000553128 ESF1Q9H501 851 aaKnown RBP21.62■■□□□ 1.05
VPS29-211ENST00000553128 LRRIQ1Q96JM4 1722 aa21.61■■□□□ 1.05
VPS29-211ENST00000553128 ABCC1P33527 1531 aa21.6■■□□□ 1.05
VPS29-211ENST00000553128 CAMSAP1Q5T5Y3 1602 aa21.59■■□□□ 1.05
VPS29-211ENST00000553128 CLIP1P30622 1438 aa21.59■■□□□ 1.05
VPS29-211ENST00000553128 ZNF335Q9H4Z2 1342 aaPredicted RBP21.58■■□□□ 1.05
VPS29-211ENST00000553128 NCKAP5LQ9HCH0 1330 aa21.58■■□□□ 1.05
VPS29-211ENST00000553128 UBTFP17480 764 aaKnown RBP21.58■■□□□ 1.05
VPS29-211ENST00000553128 KIDINS220Q9ULH0 1771 aa21.57■■□□□ 1.04
VPS29-211ENST00000553128 ITSN2Q9NZM3 1697 aa21.56■■□□□ 1.04
VPS29-211ENST00000553128 CNTLNQ9NXG0 1405 aa21.55■■□□□ 1.04
VPS29-211ENST00000553128 PREX2Q70Z35 1606 aa21.55■■□□□ 1.04
VPS29-211ENST00000553128 UBAP1LF5GYI3 381 aa21.54■■□□□ 1.04
VPS29-211ENST00000553128 NPATQ14207 1427 aa21.52■■□□□ 1.04
VPS29-211ENST00000553128 ZMYM3Q14202 1370 aa21.51■■□□□ 1.03
VPS29-211ENST00000553128 SAMD9LQ8IVG5 1584 aa21.48■■□□□ 1.03
VPS29-211ENST00000553128 MROH2AA6NES4 1674 aa21.48■■□□□ 1.03
VPS29-211ENST00000553128 CDC42BPAQ5VT25 1732 aa21.46■■□□□ 1.03
VPS29-211ENST00000553128 MYO3AQ8NEV4 1616 aa21.44■■□□□ 1.02
VPS29-211ENST00000553128 ZNF777Q9ULD5 760 aaPredicted RBP21.44■■□□□ 1.02
VPS29-211ENST00000553128 TCOF1Q13428 1488 aaKnown RBP21.44■■□□□ 1.02
VPS29-211ENST00000553128 SUPT6HQ7KZ85 1726 aaKnown RBP21.43■■□□□ 1.02
VPS29-211ENST00000553128 SYCP2Q9BX26 1530 aa21.43■■□□□ 1.02
VPS29-211ENST00000553128 CLTCQ00610 1675 aaKnown RBP21.43■■□□□ 1.02
VPS29-211ENST00000553128 HNRNPMP52272 730 aaKnown RBP eCLIP21.42■■□□□ 1.02
VPS29-211ENST00000553128 ZNF142P52746 1687 aaPredicted RBP21.42■■□□□ 1.02
VPS29-211ENST00000553128 PLA2R1Q13018 1463 aa21.42■■□□□ 1.02
VPS29-211ENST00000553128 PKD2Q13563 968 aa21.42■■□□□ 1.02
VPS29-211ENST00000553128 PTPRKQ15262 1439 aa21.42■■□□□ 1.02
VPS29-211ENST00000553128 CEP170BQ9Y4F5 1589 aaPredicted RBP21.41■■□□□ 1.02
VPS29-211ENST00000553128 SPAG9O60271 1321 aaKnown RBP21.41■■□□□ 1.02
VPS29-211ENST00000553128 CASKIN1Q8WXD9 1431 aa21.4■■□□□ 1.02
VPS29-211ENST00000553128 CCDC18Q5T9S5 1454 aa21.39■■□□□ 1.02
VPS29-211ENST00000553128 HSPA1LP34931 641 aa21.38■■□□□ 1.01
VPS29-211ENST00000553128 PLXNC1O60486 1568 aa21.38■■□□□ 1.01
VPS29-211ENST00000553128 PPP6R1Q9UPN7 881 aa21.37■■□□□ 1.01
VPS29-211ENST00000553128 ATP7AQ04656 1500 aa21.36■■□□□ 1.01
VPS29-211ENST00000553128 GPATCH8Q9UKJ3 1502 aaKnown RBP21.36■■□□□ 1.01
VPS29-211ENST00000553128 GGT6Q6P531 493 aa21.36■■□□□ 1.01
VPS29-211ENST00000553128 MED1Q15648 1581 aaPredicted RBP21.36■■□□□ 1.01
VPS29-211ENST00000553128 A2MP01023 1474 aa21.35■■□□□ 1.01
VPS29-211ENST00000553128 SCAF1Q9H7N4 1312 aaKnown RBP21.34■■□□□ 1.01
VPS29-211ENST00000553128 PIP4K2BP78356 416 aa21.34■■□□□ 1.01
VPS29-211ENST00000553128 INO80Q9ULG1 1556 aaPredicted RBP21.34■■□□□ 1.01
VPS29-211ENST00000553128 DNMT1P26358 1616 aaKnown RBP21.3■■□□□ 1
VPS29-211ENST00000553128 A2ML1A8K2U0 1454 aa21.29■■□□□ 1
VPS29-211ENST00000553128 KIAA1107Q9UPP5 1409 aa21.29■■□□□ 1
VPS29-211ENST00000553128 NEURL4Q96JN8 1562 aa21.27■□□□□ 0.99
VPS29-211ENST00000553128 CFDP1Q9UEE9 299 aaPredicted RBP21.26■□□□□ 0.99
VPS29-211ENST00000553128 FYCO1Q9BQS8 1478 aa21.26■□□□□ 0.99
VPS29-211ENST00000553128 TOM1O60784 492 aa21.24■□□□□ 0.99
VPS29-211ENST00000553128 FBXO31Q5XUX0 539 aaPredicted RBP21.24■□□□□ 0.99
VPS29-211ENST00000553128 SHANK2Q9UPX8 1470 aa21.24■□□□□ 0.99
VPS29-211ENST00000553128 CPS1P31327 1500 aa21.23■□□□□ 0.99
VPS29-211ENST00000553128 ZNF644Q9H582 1327 aaPredicted RBP21.23■□□□□ 0.99
VPS29-211ENST00000553128 PLEKHH2Q8IVE3 1493 aa21.22■□□□□ 0.99
VPS29-211ENST00000553128 CCNB3Q8WWL7 1395 aa21.22■□□□□ 0.99
VPS29-211ENST00000553128 ALKQ9UM73 1620 aa21.22■□□□□ 0.99
Retrieved 100 of 20,778 RNA–protein pairs in 170.4 ms