RNA–Protein interactions for RNA: ENST00000553116.5

RAB5B-210, Transcript of RAB5B, member RAS oncogene family, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene RAB5B, Length 3,322 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RAB5B-210ENST00000553116 TRIM52Q96A61 297 aa12.06□□□□□ -0.48
RAB5B-210ENST00000553116 GCC2Q8IWJ2 1684 aa12.05□□□□□ -0.48
RAB5B-210ENST00000553116 ABCC10Q5T3U5 1492 aa12.04□□□□□ -0.48
RAB5B-210ENST00000553116 MAPKBP1O60336 1514 aa12.04□□□□□ -0.48
RAB5B-210ENST00000553116 NEUROD1Q13562 356 aa12.04□□□□□ -0.48
RAB5B-210ENST00000553116 ABCC5O15440 1437 aa12.04□□□□□ -0.48
RAB5B-210ENST00000553116 ZCCHC11Q5TAX3 1644 aaKnown RBP12.04□□□□□ -0.48
RAB5B-210ENST00000553116 AKNAQ7Z591 1439 aa12.02□□□□□ -0.48
RAB5B-210ENST00000553116 UHRF1BP1LA0JNW5 1464 aa12.01□□□□□ -0.49
RAB5B-210ENST00000553116 SIN3AQ96ST3 1273 aa12□□□□□ -0.49
RAB5B-210ENST00000553116 ARHGAP5Q13017 1502 aa12□□□□□ -0.49
RAB5B-210ENST00000553116 TTC37Q6PGP7 1564 aa12□□□□□ -0.49
RAB5B-210ENST00000553116 PREX2Q70Z35 1606 aa12□□□□□ -0.49
RAB5B-210ENST00000553116 ADGBQ8N7X0 1667 aa11.99□□□□□ -0.49
RAB5B-210ENST00000553116 ROCK1Q13464 1354 aa11.99□□□□□ -0.49
RAB5B-210ENST00000553116 ZNF316A6NFI3 1004 aaPredicted RBP11.99□□□□□ -0.49
RAB5B-210ENST00000553116 TSPY4P0CV99 314 aa11.99□□□□□ -0.49
RAB5B-210ENST00000553116 TSPY10P0CW01 314 aa11.99□□□□□ -0.49
RAB5B-210ENST00000553116 KDM5BQ9UGL1 1544 aa11.99□□□□□ -0.49
RAB5B-210ENST00000553116 MYO5CQ9NQX4 1742 aa11.99□□□□□ -0.49
RAB5B-210ENST00000553116 CDC42BPBQ9Y5S2 1711 aa11.98□□□□□ -0.49
RAB5B-210ENST00000553116 CROCC2H7BZ55 1655 aa11.98□□□□□ -0.49
RAB5B-210ENST00000553116 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP11.98□□□□□ -0.49
RAB5B-210ENST00000553116 KDM6BO15054 1643 aa11.98□□□□□ -0.49
RAB5B-210ENST00000553116 HNRNPMP52272 730 aaKnown RBP eCLIP11.98□□□□□ -0.49
RAB5B-210ENST00000553116 ANKRD30AQ9BXX3 1397 aa11.97□□□□□ -0.49
RAB5B-210ENST00000553116 NPM1P06748 294 aaKnown RBP eCLIP11.96□□□□□ -0.49
RAB5B-210ENST00000553116 C9orf84Q5VXU9 1444 aa11.95□□□□□ -0.5
RAB5B-210ENST00000553116 PELP1Q8IZL8 1130 aaKnown RBP11.95□□□□□ -0.5
RAB5B-210ENST00000553116 SAMD9LQ8IVG5 1584 aa11.95□□□□□ -0.5
RAB5B-210ENST00000553116 NCOA1Q15788 1441 aa11.94□□□□□ -0.5
RAB5B-210ENST00000553116 DIEXFQ68CQ4 756 aaKnown RBP11.94□□□□□ -0.5
RAB5B-210ENST00000553116 TONSLQ96HA7 1378 aa11.94□□□□□ -0.5
RAB5B-210ENST00000553116 SYCP2Q9BX26 1530 aa11.93□□□□□ -0.5
RAB5B-210ENST00000553116 CCDC141Q6ZP82 1450 aa11.93□□□□□ -0.5
RAB5B-210ENST00000553116 ACIN1Q9UKV3 1341 aaKnown RBP11.93□□□□□ -0.5
RAB5B-210ENST00000553116 ADGRL2O95490 1459 aa11.92□□□□□ -0.5
RAB5B-210ENST00000553116 SHANK2Q9UPX8 1470 aa11.92□□□□□ -0.5
RAB5B-210ENST00000553116 WDR7Q9Y4E6 1490 aa11.92□□□□□ -0.5
RAB5B-210ENST00000553116 MPHOSPH9Q99550 1183 aa11.92□□□□□ -0.5
RAB5B-210ENST00000553116 ARHGEF5Q12774 1597 aa11.92□□□□□ -0.5
RAB5B-210ENST00000553116 EFCAB2Q5VUJ9 269 aa11.91□□□□□ -0.5
RAB5B-210ENST00000553116 SLC4A1APQ9BWU0 796 aaKnown RBP11.91□□□□□ -0.5
RAB5B-210ENST00000553116 ANKRD50Q9ULJ7 1429 aa11.91□□□□□ -0.5
RAB5B-210ENST00000553116 RSPH4AQ5TD94 716 aa11.9□□□□□ -0.5
RAB5B-210ENST00000553116 PLEKHH2Q8IVE3 1493 aa11.9□□□□□ -0.5
RAB5B-210ENST00000553116 FOXD1Q16676 465 aa11.9□□□□□ -0.5
RAB5B-210ENST00000553116 KIF15Q9NS87 1388 aa11.9□□□□□ -0.5
RAB5B-210ENST00000553116 PLCH2O75038 1416 aa11.9□□□□□ -0.51
RAB5B-210ENST00000553116 MBD5Q9P267 1494 aa11.89□□□□□ -0.51
RAB5B-210ENST00000553116 ASXL2Q76L83 1435 aa11.89□□□□□ -0.51
RAB5B-210ENST00000553116 TIMELESSQ9UNS1 1208 aa11.88□□□□□ -0.51
RAB5B-210ENST00000553116 KIAA1107Q9UPP5 1409 aa11.86□□□□□ -0.51
RAB5B-210ENST00000553116 MYT1LQ9UL68 1186 aa11.86□□□□□ -0.51
RAB5B-210ENST00000553116 SCAF1Q9H7N4 1312 aaKnown RBP11.86□□□□□ -0.51
RAB5B-210ENST00000553116 NUP155O75694 1391 aa11.84□□□□□ -0.51
RAB5B-210ENST00000553116 DENND4BO75064 1496 aaPredicted RBP11.84□□□□□ -0.51
RAB5B-210ENST00000553116 ABCC1P33527 1531 aa11.84□□□□□ -0.51
RAB5B-210ENST00000553116 CYB5RLQ6IPT4 315 aa11.84□□□□□ -0.51
RAB5B-210ENST00000553116 ABCA9Q8IUA7 1624 aa11.83□□□□□ -0.52
RAB5B-210ENST00000553116 FANCAO15360 1455 aa11.83□□□□□ -0.52
RAB5B-210ENST00000553116 PPP1R15AO75807 674 aaPredicted RBP11.83□□□□□ -0.52
RAB5B-210ENST00000553116 ARHGEF12Q9NZN5 1544 aa11.83□□□□□ -0.52
RAB5B-210ENST00000553116 PZPP20742 1482 aa11.82□□□□□ -0.52
RAB5B-210ENST00000553116 PKD2Q13563 968 aa11.82□□□□□ -0.52
RAB5B-210ENST00000553116 MAST1Q9Y2H9 1570 aa11.82□□□□□ -0.52
RAB5B-210ENST00000553116 ARAP3Q8WWN8 1544 aa11.82□□□□□ -0.52
RAB5B-210ENST00000553116 GRWD1Q9BQ67 446 aaKnown RBP eCLIP11.81□□□□□ -0.52
RAB5B-210ENST00000553116 SPAG9O60271 1321 aaKnown RBP11.81□□□□□ -0.52
RAB5B-210ENST00000553116 TRAPPC8Q9Y2L5 1435 aa11.81□□□□□ -0.52
RAB5B-210ENST00000553116 AFAP1Q8N556 730 aa11.8□□□□□ -0.52
RAB5B-210ENST00000553116 ANKRD30BQ9BXX2 1392 aa11.79□□□□□ -0.52
RAB5B-210ENST00000553116 ADGRL1O94910 1474 aa11.79□□□□□ -0.52
RAB5B-210ENST00000553116 PLXNC1O60486 1568 aa11.79□□□□□ -0.52
RAB5B-210ENST00000553116 RIMBP3CA6NJZ7 1639 aa11.78□□□□□ -0.52
RAB5B-210ENST00000553116 RIMBP3BA6NNM3 1639 aa11.78□□□□□ -0.52
RAB5B-210ENST00000553116 RIMBP3Q9UFD9 1639 aa11.78□□□□□ -0.52
RAB5B-210ENST00000553116 DUOX2Q9NRD8 1548 aa11.77□□□□□ -0.52
RAB5B-210ENST00000553116 CD109Q6YHK3 1445 aa11.77□□□□□ -0.53
RAB5B-210ENST00000553116 SCAPERQ9BY12 1400 aa11.77□□□□□ -0.53
RAB5B-210ENST00000553116 RPRD2Q5VT52 1461 aaKnown RBP11.76□□□□□ -0.53
RAB5B-210ENST00000553116 L3MBTL2Q969R5 705 aa11.76□□□□□ -0.53
RAB5B-210ENST00000553116 HIRIP3Q9BW71 556 aaPredicted RBP11.76□□□□□ -0.53
RAB5B-210ENST00000553116 KDM5DQ9BY66 1539 aa11.75□□□□□ -0.53
RAB5B-210ENST00000553116 FAM135AQ9P2D6 1515 aa11.75□□□□□ -0.53
RAB5B-210ENST00000553116 ZFYVE16Q7Z3T8 1539 aa11.74□□□□□ -0.53
RAB5B-210ENST00000553116 ERBINQ96RT1 1412 aa11.74□□□□□ -0.53
RAB5B-210ENST00000553116 CFAP74Q9C0B2 1584 aa11.74□□□□□ -0.53
RAB5B-210ENST00000553116 ATP7AQ04656 1500 aa11.73□□□□□ -0.53
RAB5B-210ENST00000553116 ZNF326Q5BKZ1 582 aaKnown RBP11.73□□□□□ -0.53
RAB5B-210ENST00000553116 UNC13BO14795 1591 aa11.72□□□□□ -0.53
RAB5B-210ENST00000553116 RTEL1-TNFRSF6BF6WH68 1400 aa11.72□□□□□ -0.53
RAB5B-210ENST00000553116 MIER1Q8N108 512 aa11.71□□□□□ -0.54
RAB5B-210ENST00000553116 ZNF518AQ6AHZ1 1483 aa11.7□□□□□ -0.54
RAB5B-210ENST00000553116 TEX14Q8IWB6 1497 aa11.7□□□□□ -0.54
RAB5B-210ENST00000553116 INO80Q9ULG1 1556 aaPredicted RBP11.7□□□□□ -0.54
RAB5B-210ENST00000553116 IQGAP3Q86VI3 1631 aa11.69□□□□□ -0.54
RAB5B-210ENST00000553116 KIF3BO15066 747 aa11.68□□□□□ -0.54
RAB5B-210ENST00000553116 CCDC144AA2RUR9 1427 aa11.68□□□□□ -0.54
RAB5B-210ENST00000553116 KANK1Q14678 1352 aa11.67□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 31.2 ms