RNA–Protein interactions for RNA: ENST00000552620.1

CHMP4A-210, Transcript of charged multivesicular body protein 4A, humanhuman

TSL 2

Gene CHMP4A, Length 716 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP4A-210ENST00000552620 ARHGEF1Q92888 912 aaKnown RBP9.46□□□□□ -0.9
CHMP4A-210ENST00000552620 LHX8Q68G74 356 aa9.45□□□□□ -0.9
CHMP4A-210ENST00000552620 SLC39A7Q92504 469 aa9.45□□□□□ -0.9
CHMP4A-210ENST00000552620 PDE4AP27815 886 aa9.44□□□□□ -0.9
CHMP4A-210ENST00000552620 C7P10643 843 aa9.43□□□□□ -0.9
CHMP4A-210ENST00000552620 ZEB1P37275 1124 aaPredicted RBP9.42□□□□□ -0.9
CHMP4A-210ENST00000552620 MS4A4AQ96JQ5 239 aa9.42□□□□□ -0.9
CHMP4A-210ENST00000552620 METRNQ9UJH8 293 aa9.42□□□□□ -0.9
CHMP4A-210ENST00000552620 LMOD2Q6P5Q4 547 aa9.41□□□□□ -0.9
CHMP4A-210ENST00000552620 CECR2Q9BXF3 1484 aa9.4□□□□□ -0.9
CHMP4A-210ENST00000552620 LARP6Q9BRS8 491 aaKnown RBP9.4□□□□□ -0.9
CHMP4A-210ENST00000552620 TRIM35Q9UPQ4 493 aa9.4□□□□□ -0.9
CHMP4A-210ENST00000552620 MROH2BQ7Z745 1585 aa9.4□□□□□ -0.9
CHMP4A-210ENST00000552620 DHX30Q7L2E3 1194 aaKnown RBP eCLIP9.39□□□□□ -0.91
CHMP4A-210ENST00000552620 NCKAP5LQ9HCH0 1330 aa9.38□□□□□ -0.91
CHMP4A-210ENST00000552620 MFSD10Q14728 455 aa9.37□□□□□ -0.91
CHMP4A-210ENST00000552620 DDX27Q96GQ7 796 aaKnown RBP9.37□□□□□ -0.91
CHMP4A-210ENST00000552620 CRISPLD2Q9H0B8 497 aa9.36□□□□□ -0.91
CHMP4A-210ENST00000552620 IER5LQ5T953 404 aa9.35□□□□□ -0.91
CHMP4A-210ENST00000552620 BAZ1AQ9NRL2 1556 aaPredicted RBP9.35□□□□□ -0.91
CHMP4A-210ENST00000552620 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP9.35□□□□□ -0.913e-7■■■■■ 26.8
CHMP4A-210ENST00000552620 POTEB2H3BUK9 544 aa9.33□□□□□ -0.92
CHMP4A-210ENST00000552620 PPARGC1BQ86YN6 1023 aaKnown RBP9.33□□□□□ -0.92
CHMP4A-210ENST00000552620 POTEFA5A3E0 1075 aa9.32□□□□□ -0.92
CHMP4A-210ENST00000552620 SEC24BO95487 1268 aa9.32□□□□□ -0.92
CHMP4A-210ENST00000552620 SMYD5Q6GMV2 418 aa9.32□□□□□ -0.92
CHMP4A-210ENST00000552620 WIZO95785 1651 aa9.32□□□□□ -0.92
CHMP4A-210ENST00000552620 TESPA1A2RU30 521 aaPredicted RBP9.31□□□□□ -0.92
CHMP4A-210ENST00000552620 SEMA3EO15041 775 aa9.31□□□□□ -0.92
CHMP4A-210ENST00000552620 ARIH1Q9Y4X5 557 aaPredicted RBP9.31□□□□□ -0.92
CHMP4A-210ENST00000552620 ILDR1Q86SU0 546 aaPredicted RBP9.3□□□□□ -0.92
CHMP4A-210ENST00000552620 FAM9AQ8IZU1 332 aaPredicted RBP9.3□□□□□ -0.92
CHMP4A-210ENST00000552620 COLQQ9Y215 455 aaPredicted RBP9.3□□□□□ -0.92
CHMP4A-210ENST00000552620 CAMK2BQ13554 666 aa9.29□□□□□ -0.92
CHMP4A-210ENST00000552620 IRX5P78411 483 aaPredicted RBP9.27□□□□□ -0.93
CHMP4A-210ENST00000552620 GPHNQ9NQX3 736 aaPredicted RBP9.27□□□□□ -0.93
CHMP4A-210ENST00000552620 TOP2AP11388 1531 aaKnown RBP9.26□□□□□ -0.93
CHMP4A-210ENST00000552620 PLCG2P16885 1265 aa9.26□□□□□ -0.93
CHMP4A-210ENST00000552620 PPP1R15BQ5SWA1 713 aa9.26□□□□□ -0.93
CHMP4A-210ENST00000552620 POTEJP0CG39 1038 aa9.25□□□□□ -0.93
CHMP4A-210ENST00000552620 ZC3H15Q8WU90 426 aaKnown RBP9.25□□□□□ -0.93
CHMP4A-210ENST00000552620 OTUD5Q96G74 571 aa9.24□□□□□ -0.93
CHMP4A-210ENST00000552620 OCEL1Q9H607 264 aa9.24□□□□□ -0.93
CHMP4A-210ENST00000552620 EIF4G1Q04637 1599 aaKnown RBP9.24□□□□□ -0.93
CHMP4A-210ENST00000552620 G3V3G9 751 aa9.23□□□□□ -0.93
CHMP4A-210ENST00000552620 MAMSTRQ6ZN01 415 aa9.23□□□□□ -0.93
CHMP4A-210ENST00000552620 SMARCA4P51532 1647 aa9.23□□□□□ -0.93
CHMP4A-210ENST00000552620 TMEM132AQ24JP5 1023 aa9.22□□□□□ -0.93
CHMP4A-210ENST00000552620 MICALL2Q8IY33 904 aa9.22□□□□□ -0.93
CHMP4A-210ENST00000552620 TMC2Q8TDI7 906 aa9.22□□□□□ -0.93
CHMP4A-210ENST00000552620 CCDC88BA6NC98 1476 aa9.21□□□□□ -0.94
CHMP4A-210ENST00000552620 DPY19L2Q6NUT2 758 aa9.19□□□□□ -0.94
CHMP4A-210ENST00000552620 PDCD7Q8N8D1 485 aaKnown RBP9.19□□□□□ -0.94
CHMP4A-210ENST00000552620 EEA1Q15075 1411 aa9.19□□□□□ -0.94
CHMP4A-210ENST00000552620 SCUBE2Q9NQ36 999 aa9.18□□□□□ -0.94
CHMP4A-210ENST00000552620 SMARCA2P51531 1590 aa9.17□□□□□ -0.94
CHMP4A-210ENST00000552620 SPDYE16A6NNV3 312 aaPredicted RBP9.17□□□□□ -0.94
CHMP4A-210ENST00000552620 DSG2Q14126 1118 aa9.17□□□□□ -0.94
CHMP4A-210ENST00000552620 BOLA1Q9Y3E2 137 aa9.17□□□□□ -0.94
CHMP4A-210ENST00000552620 FOXK1P85037 733 aa9.16□□□□□ -0.94
CHMP4A-210ENST00000552620 WRNQ14191 1432 aaPredicted RBP eCLIP9.15□□□□□ -0.94
CHMP4A-210ENST00000552620 DPYSL4O14531 572 aa9.15□□□□□ -0.94
CHMP4A-210ENST00000552620 TNIKQ9UKE5 1360 aa9.14□□□□□ -0.95
CHMP4A-210ENST00000552620 ZMYND10O75800 440 aa9.14□□□□□ -0.95
CHMP4A-210ENST00000552620 PDIA6Q15084 440 aa9.14□□□□□ -0.95
CHMP4A-210ENST00000552620 TMEM121BQ9BXQ6 578 aaPredicted RBP9.14□□□□□ -0.95
CHMP4A-210ENST00000552620 SLC24A3Q9HC58 644 aa9.14□□□□□ -0.95
CHMP4A-210ENST00000552620 GTF3C3Q9Y5Q9 886 aa9.14□□□□□ -0.95
CHMP4A-210ENST00000552620 UNC13AQ9UPW8 1703 aa9.14□□□□□ -0.95
CHMP4A-210ENST00000552620 ERICH6Q7L0X2 663 aa9.13□□□□□ -0.95
CHMP4A-210ENST00000552620 GPIHBP1Q8IV16 184 aa9.13□□□□□ -0.95
CHMP4A-210ENST00000552620 L3MBTL3Q96JM7 780 aaPredicted RBP9.13□□□□□ -0.95
CHMP4A-210ENST00000552620 EMILIN3Q9NT22 766 aa9.13□□□□□ -0.95
CHMP4A-210ENST00000552620 MLLT3P42568 568 aaPredicted RBP9.12□□□□□ -0.95
CHMP4A-210ENST00000552620 BRPF1P55201 1214 aaPredicted RBP9.12□□□□□ -0.95
CHMP4A-210ENST00000552620 PLPP6Q8IY26 295 aa9.12□□□□□ -0.95
CHMP4A-210ENST00000552620 NEUROD2Q15784 382 aa9.11□□□□□ -0.95
CHMP4A-210ENST00000552620 PEG3Q9GZU2 1588 aa9.11□□□□□ -0.95
CHMP4A-210ENST00000552620 C2orf72A6NCS6 295 aa9.1□□□□□ -0.95
CHMP4A-210ENST00000552620 RBM26Q5T8P6 1007 aaKnown RBP9.1□□□□□ -0.95
CHMP4A-210ENST00000552620 BARGINQ6ZT62 677 aa9.1□□□□□ -0.95
CHMP4A-210ENST00000552620 ABCC8Q09428 1581 aa9.09□□□□□ -0.95
CHMP4A-210ENST00000552620 KIF3CO14782 793 aa9.08□□□□□ -0.96
CHMP4A-210ENST00000552620 MAP3K9P80192 1104 aa9.07□□□□□ -0.96
CHMP4A-210ENST00000552620 KRI1Q8N9T8 703 aaKnown RBP9.07□□□□□ -0.96
CHMP4A-210ENST00000552620 EIF2AK3Q9NZJ5 1116 aaKnown RBP9.07□□□□□ -0.96
CHMP4A-210ENST00000552620 BICRAQ9NZM4 1560 aa9.07□□□□□ -0.96
CHMP4A-210ENST00000552620 SOGA1O94964 1423 aa9.06□□□□□ -0.96
CHMP4A-210ENST00000552620 CEP162Q5TB80 1403 aa9.06□□□□□ -0.96
CHMP4A-210ENST00000552620 SLAIN1Q8ND83 568 aa9.06□□□□□ -0.96
CHMP4A-210ENST00000552620 AK7Q96M32 723 aa9.05□□□□□ -0.96
CHMP4A-210ENST00000552620 GOLGA3Q08378 1498 aa9.04□□□□□ -0.96
CHMP4A-210ENST00000552620 C3orf67Q6ZVT6 689 aa9.04□□□□□ -0.96
CHMP4A-210ENST00000552620 CCER1Q8TC90 406 aaPredicted RBP9.04□□□□□ -0.96
CHMP4A-210ENST00000552620 UBTFP17480 764 aaKnown RBP9.02□□□□□ -0.97
CHMP4A-210ENST00000552620 DAXXQ9UER7 740 aaPredicted RBP9.02□□□□□ -0.97
CHMP4A-210ENST00000552620 GRXCR2A6NFK2 248 aa9.01□□□□□ -0.97
CHMP4A-210ENST00000552620 TBC1D12O60347 775 aa9.01□□□□□ -0.97
CHMP4A-210ENST00000552620 UPF1Q92900 1129 aaKnown RBP eCLIP9.01□□□□□ -0.97
CHMP4A-210ENST00000552620 TIMELESSQ9UNS1 1208 aa9.01□□□□□ -0.97
Retrieved 100 of 20,778 RNA–protein pairs in 65.8 ms